All File Changes
v319_preview to v319_preview2 (2015-06-29 to 2015-07-06) v319
- src/hg/hgIntegrator/hgIntegrator.c
- lines changed 6, context: html, text, full: html, text
For AJAX file upload, modern browsers support the FormData API. In order to
support older browsers (esp IE), I was instead using the JQuery plugin Bifrost
which uses a hidden iframe to submit a form and read the result of the query.
That worked on modern browsers too -- except IE11. So, if a browser supports
FormData, use that; otherwise fall back on the Bifrost plugin.
Meanwhile, I clean up UserRegionsMixin.js a bit by moving the file uploading
code into cart.js and moving the JQuery selecting code into UserRegions.jsx.
fixes #15609
- src/hg/hgTracks/hgTracks.c
- lines changed 4, context: html, text, full: html, text
put the database name in trackLog output
- src/hg/htdocs/FAQ/FAQblat.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/FAQ/FAQcite.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/FAQ/FAQcustom.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/FAQ/FAQdisplay.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/FAQ/FAQdownloads.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/FAQ/FAQformat.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/FAQ/FAQlicense.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/FAQ/FAQlink.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/FAQ/FAQmaillist.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/FAQ/FAQreleases.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/FAQ/FAQtables.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/FAQ/FAQtracks.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/FAQ/index.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/Neandertal/index.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/admin/403.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/admin/404.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/admin/500.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/admin/cvs.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/admin/git.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/admin/index.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/admin/jk-install.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/admin/mirror.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/cite.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/conditions.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/contacts.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/certificates/certificate_hg15.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/certificates/certificate_hg16.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/goldenPath/certificates/index.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/goldenPath/credits.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/datorg.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/gbdDescriptions.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/gbdDescriptionsOld.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/axt.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/bam.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/bedgraph.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/bigBed.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/bigGenePred.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/bigWig.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/blatSpec.html
- lines changed 5, context: html, text, full: html, text
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- src/hg/htdocs/goldenPath/help/chain.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/chimera.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/customColumn.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/customTrack.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/fileSearch.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/ftp.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/gbib.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/geneSearchBox.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/genomeEuro.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/haplotypes.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hg18ToHg19LiftOver.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hgBamTrackHelp.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hgBaseLabel.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hgCodonColoring.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hgCodonColoringMrna.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hgGenomeHelp.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hgIndelDisplay.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hgIntegratorHelp.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hgNearHelp.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hgRegMotifHelp.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hgSessionHelp.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hgTablesHelp.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hgTextHelp.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- lines changed 25, context: html, text, full: html, text
Add help doc for new Track Hub version doc and hubCheck. refs #10015
- src/hg/htdocs/goldenPath/help/hgTracksHelp.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hgVcfTrackHelp.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hubQuickStart.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/hubQuickStartGroups.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/image.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/index.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/iupac.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/liftOver.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/multiView.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/mysql.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/net.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/phastCons.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/qValue.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/query.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/sessions.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/trackDb/makefile
- lines changed 3, context: html, text, full: html, text
Create version 1 track hub spec (getting ready for release). refs #10015
- lines changed 9, context: html, text, full: html, text
Moving from soft link process to one more file for release of trackDb version updates
- src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.css
- lines changed 3, context: html, text, full: html, text
Brighten level colors a bit, prompted by WashU input. refs #10015
- src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html
- lines changed 14, context: html, text, full: html, text
A few more hard-coded menus to fix, refs #15389
- src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.html
- lines changed 1, context: html, text, full: html, text
Moving from soft link process to one more file for release of trackDb version updates
- src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v0.html
- lines changed 14, context: html, text, full: html, text
A few more hard-coded menus to fix, refs #15389
- lines changed 1, context: html, text, full: html, text
Fix misspelling. refs #10015
- src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v1.html
- lines changed 789, context: html, text, full: html, text
Create version 1 track hub spec (getting ready for release). refs #10015
- lines changed 1, context: html, text, full: html, text
Fix misspelling. refs #10015
- src/hg/htdocs/goldenPath/help/trackDescriptions.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/trackSearch.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/trix.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/twoBit.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/vcf.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/help/wiggle.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/hgText.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/hgTracks.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/labs.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/mapPlots/RHguide.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/newsarch.html
- lines changed 46, context: html, text, full: html, text
added gencode announcement to archives
- lines changed 56, context: html, text, full: html, text
moved gencode announcement
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/pubs.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/goldenPath/stats.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/index.html
- lines changed 4, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/indexNews.html
- lines changed 103, context: html, text, full: html, text
added gencode genes announcement to homepage
- src/hg/htdocs/jobs.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/kc.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/knownIssues.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/license/index.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/mirror.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/staff.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/template.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/training/index.html
- lines changed 20, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- lines changed 17, context: html, text, full: html, text
adding a workshop. dropping completed workshop
- src/hg/htdocs/training/vids/index.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/htdocs/util.html
- lines changed 5, context: html, text, full: html, text
Adding CGI menubar to many static pages, refs #15389
- src/hg/js/model/lib/ImModel.js
- lines changed 16, context: html, text, full: html, text
For AJAX file upload, modern browsers support the FormData API. In order to
support older browsers (esp IE), I was instead using the JQuery plugin Bifrost
which uses a hidden iframe to submit a form and read the result of the query.
That worked on modern browsers too -- except IE11. So, if a browser supports
FormData, use that; otherwise fall back on the Bifrost plugin.
Meanwhile, I clean up UserRegionsMixin.js a bit by moving the file uploading
code into cart.js and moving the JQuery selecting code into UserRegions.jsx.
fixes #15609
- src/hg/js/model/lib/UserRegionsMixin.js
- lines changed 18, context: html, text, full: html, text
For AJAX file upload, modern browsers support the FormData API. In order to
support older browsers (esp IE), I was instead using the JQuery plugin Bifrost
which uses a hidden iframe to submit a form and read the result of the query.
That worked on modern browsers too -- except IE11. So, if a browser supports
FormData, use that; otherwise fall back on the Bifrost plugin.
Meanwhile, I clean up UserRegionsMixin.js a bit by moving the file uploading
code into cart.js and moving the JQuery selecting code into UserRegions.jsx.
fixes #15609
- src/hg/js/model/lib/cart.js
- lines changed 40, context: html, text, full: html, text
For AJAX file upload, modern browsers support the FormData API. In order to
support older browsers (esp IE), I was instead using the JQuery plugin Bifrost
which uses a hidden iframe to submit a form and read the result of the query.
That worked on modern browsers too -- except IE11. So, if a browser supports
FormData, use that; otherwise fall back on the Bifrost plugin.
Meanwhile, I clean up UserRegionsMixin.js a bit by moving the file uploading
code into cart.js and moving the JQuery selecting code into UserRegions.jsx.
fixes #15609
- src/hg/js/react/lib/UserRegions.jsx
- lines changed 44, context: html, text, full: html, text
For AJAX file upload, modern browsers support the FormData API. In order to
support older browsers (esp IE), I was instead using the JQuery plugin Bifrost
which uses a hidden iframe to submit a form and read the result of the query.
That worked on modern browsers too -- except IE11. So, if a browser supports
FormData, use that; otherwise fall back on the Bifrost plugin.
Meanwhile, I clean up UserRegionsMixin.js a bit by moving the file uploading
code into cart.js and moving the JQuery selecting code into UserRegions.jsx.
fixes #15609
- src/hg/lib/mafGene.c
- lines changed 13, context: html, text, full: html, text
fix some problems in the mafGene library where exons that had
non-contiguous maf blocks within them weren't be dealt with properly
- src/hg/lib/pubsBlat.as
- lines changed 11, context: html, text, full: html, text
Updating pubsBlat.as to reflect current pubsBlat table, and adding
pubsBlat2.as to reflect Max's newer schema with more extra fields.
refs #15610
- src/hg/lib/pubsBlat2.as
- lines changed 30, context: html, text, full: html, text
Updating pubsBlat.as to reflect current pubsBlat table, and adding
pubsBlat2.as to reflect Max's newer schema with more extra fields.
refs #15610
- src/hg/lib/userRegions.c
- lines changed 1, context: html, text, full: html, text
Oops, using sizeof instead of ArraySize was causing a SEGV when pasting
bogus text with more than 5 words per line into the user regions box.
- src/hg/makeDb/doc/ce11/initialBuild.txt
- lines changed 3, context: html, text, full: html, text
correct comments on liftOver refs #15209
- src/hg/makeDb/doc/ce11/lastzRuns.txt
- lines changed 59, context: html, text, full: html, text
running up melHap1 lastz refs #15209
- lines changed 121, context: html, text, full: html, text
running up caeAng2 and melInc2 lastz refs #15209
- lines changed 71, context: html, text, full: html, text
finished with melHap1 caeAng2 melInc2 and running up panRed1 refs #15209
- lines changed 58, context: html, text, full: html, text
running up priPac3 refs #15209
- lines changed 116, context: html, text, full: html, text
running up cb4 and caePb3 refs #15209
- lines changed 28, context: html, text, full: html, text
finished up with panRed1 priPac3 cb4 caePb3 refs #15209
- lines changed 57, context: html, text, full: html, text
done with caeRem4 refs #15209
- src/hg/makeDb/doc/hg17.txt
- lines changed 76, context: html, text, full: html, text
adding haplotypeLocations table for hg17 using BLAT/Self-chain to place them. (only 2 haplotypes in hg17).
- src/hg/makeDb/doc/hg18.txt
- lines changed 54, context: html, text, full: html, text
documenting hg18.haplotypeLocationsEnsembl
- lines changed 1, context: html, text, full: html, text
adding haplotypeLocations table for hg17 using BLAT/Self-chain to place them. (only 2 haplotypes in hg17).
- src/hg/makeDb/doc/hg38/multiz20way.txt
- lines changed 1, context: html, text, full: html, text
update the CDS FASTA alignments for hg38
- src/hg/makeDb/doc/ucscGenes/hg38.ucscGenes16.sh
- lines changed 40, context: html, text, full: html, text
wrap-up of GENCODE Basic gene set
- src/hg/makeDb/doc/worms/caeAng2.txt
- lines changed 430, context: html, text, full: html, text
initial browser instructions refs #15209
- src/hg/makeDb/doc/worms/melInc2.txt
- lines changed 438, context: html, text, full: html, text
initial browser instructions refs #15209
- lines changed 63, context: html, text, full: html, text
done with masking refs #15209
- src/hg/makeDb/doc/worms/panRed1.txt
- lines changed 471, context: html, text, full: html, text
running up windowMasker refs #15209
- src/hg/makeDb/doc/worms/priPac3.txt
- lines changed 463, context: html, text, full: html, text
running up windowMasker refs #15209
- src/hg/makeDb/genbank/etc/genbank.conf
- lines changed 20, context: html, text, full: html, text
Added priPac3 - P. pacificus refs #15209
- src/hg/makeDb/makeGencodeKnownGene/makeGencodeKnownGene.c
- lines changed 206, context: html, text, full: html, text
code used to build the GENCODE Basic track
- src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.html
- lines changed 15, context: html, text, full: html, text
made a few corrections per code review #15628
- src/hg/makeDb/trackDb/human/hg38/primateChainNet.html
- lines changed 183, context: html, text, full: html, text
Adding hg38-specific primate chain/net page, so hg19 values aren't being reported where they're not appropriate
- lines changed 12, context: html, text, full: html, text
A few edits suggested by Donna
- src/hg/makeDb/trackDb/human/hg38/wgEncodeReg.ra
- lines changed 1, context: html, text, full: html, text
Per Kate, reverted her previous change; refs #14353
- src/hg/makeDb/trackDb/makefile
- lines changed 1, context: html, text, full: html, text
adding melInc2 refs #15209
- lines changed 1, context: html, text, full: html, text
adding priPac3 to the build refs #15209
- lines changed 1, context: html, text, full: html, text
adding panRed1 Panagrellus redivivus to the build refs #15209
- lines changed 1, context: html, text, full: html, text
adding haeCon2 to the build refs #15209
- src/hg/makeDb/trackDb/worm/caeAng2/trackDb.ra
- lines changed 5, context: html, text, full: html, text
adding search rule for gold;
- src/hg/makeDb/trackDb/worm/haeCon2/description.html
- lines changed 63, context: html, text, full: html, text
adding haeCon2 to the build refs #15209
- src/hg/makeDb/trackDb/worm/haeCon2/gap.html
- lines changed 31, context: html, text, full: html, text
adding haeCon2 to the build refs #15209
- src/hg/makeDb/trackDb/worm/haeCon2/gold.html
- lines changed 34, context: html, text, full: html, text
adding haeCon2 to the build refs #15209
- src/hg/makeDb/trackDb/worm/haeCon2/trackDb.ra
- lines changed 8, context: html, text, full: html, text
adding haeCon2 to the build refs #15209
- lines changed 5, context: html, text, full: html, text
adding gold table search rule refs #15209
- src/hg/makeDb/trackDb/worm/melInc2/description.html
- lines changed 63, context: html, text, full: html, text
initial files from makeGenomeDb.pl refs #15209
- src/hg/makeDb/trackDb/worm/melInc2/gap.html
- lines changed 30, context: html, text, full: html, text
initial files from makeGenomeDb.pl refs #15209
- src/hg/makeDb/trackDb/worm/melInc2/gold.html
- lines changed 34, context: html, text, full: html, text
initial files from makeGenomeDb.pl refs #15209
- src/hg/makeDb/trackDb/worm/melInc2/trackDb.ra
- lines changed 8, context: html, text, full: html, text
initial files from makeGenomeDb.pl refs #15209
- lines changed 5, context: html, text, full: html, text
adding gold table search rule refs #15209
- src/hg/makeDb/trackDb/worm/panRed1/description.html
- lines changed 63, context: html, text, full: html, text
adding panRed1 Panagrellus redivivus to the build refs #15209
- src/hg/makeDb/trackDb/worm/panRed1/gap.html
- lines changed 30, context: html, text, full: html, text
adding panRed1 Panagrellus redivivus to the build refs #15209
- src/hg/makeDb/trackDb/worm/panRed1/gold.html
- lines changed 34, context: html, text, full: html, text
adding panRed1 Panagrellus redivivus to the build refs #15209
- src/hg/makeDb/trackDb/worm/panRed1/trackDb.ra
- lines changed 8, context: html, text, full: html, text
adding panRed1 Panagrellus redivivus to the build refs #15209
- lines changed 5, context: html, text, full: html, text
adding gold track search rule refs #15209
- src/hg/makeDb/trackDb/worm/priPac3/description.html
- lines changed 63, context: html, text, full: html, text
adding priPac3 to the build refs #15209
- src/hg/makeDb/trackDb/worm/priPac3/gap.html
- lines changed 31, context: html, text, full: html, text
adding priPac3 to the build refs #15209
- src/hg/makeDb/trackDb/worm/priPac3/gold.html
- lines changed 34, context: html, text, full: html, text
adding priPac3 to the build refs #15209
- src/hg/makeDb/trackDb/worm/priPac3/trackDb.ra
- lines changed 8, context: html, text, full: html, text
adding priPac3 to the build refs #15209
- lines changed 5, context: html, text, full: html, text
adding gold table search rule refs #15209
- src/hg/mouseStuff/netStats/netStats.c
- lines changed 1, context: html, text, full: html, text
removed unuseful netStats output to of chroms to stdout, seems to be spurious debug message (no redmine)
- src/hg/utils/automation/doRepeatMasker.pl
- lines changed 3, context: html, text, full: html, text
do not always have all classes to construct bigBed refs #15209
- src/hg/utils/checkStaticHtmlLinks/checkStaticHtmlLinks.c
- lines changed 5, context: html, text, full: html, text
Fixes requested by Angie in codereview
- src/hg/utils/hubCheck/hubCheck.c
- lines changed 23, context: html, text, full: html, text
Retire temporary help message. This makes version check options more visible. refs #10015
- src/hg/utils/paSNP/paSNP.c
- lines changed 4, context: html, text, full: html, text
fix some problems in the mafGene library where exons that had
non-contiguous maf blocks within them weren't be dealt with properly
- src/hg/visiGene/hgVisiGene/fullTextExperiment.c
- lines changed 1, context: html, text, full: html, text
Fixes RM#12038. Accidentally lost the wildcard part of an SQL query in visiSearch.c which affected contributor and other searches.
- src/hg/visiGene/hgVisiGene/printCaption.c
- lines changed 1, context: html, text, full: html, text
Fixes RM#12038. Accidentally lost the wildcard part of an SQL query in visiSearch.c which affected contributor and other searches.
- src/hg/visiGene/hgVisiGene/visiSearch.c
- lines changed 10, context: html, text, full: html, text
Fixes RM#12038. Accidentally lost the wildcard part of an SQL query in visiSearch.c which affected contributor and other searches.
- src/inc/jsonParse.h
- lines changed 7, context: html, text, full: html, text
Added support for null to jsonParse, except for when we expect to find
an int, float or boolean.
- src/lib/jsonParse.c
- lines changed 97, context: html, text, full: html, text
Added support for null to jsonParse, except for when we expect to find
an int, float or boolean.
- src/test/buildTableDescriptions.pl
- lines changed 2, context: html, text, full: html, text
Don't expect to find autoSql for metaDb tables or big* (fileName-only) tables.
- src/utils/qa/weeklybld/buildEnv.csh
- lines changed 2, context: html, text, full: html, text
v319 preview2 refs #15624
- lines changed: 5517
- files changed: 193