All File Changes
v348_preview2 to v348_base (2017-04-17 to 2017-04-24) v348
Show details
- src/hg/checkTableCoords/tests/input/fakeChromInfo.sql
- lines changed 5, context: html, text, full: html, text
10b21f9d8b8d7c84adc2d79e559811f66c7dda0c Wed Apr 19 11:21:56 2017 -0700
Make fakeChromInfo safer by limiting it to the test database. Would be a shame to blow away some other database's chromInfo by accident. :)
- src/hg/checkTableCoords/tests/makefile
- lines changed 5, context: html, text, full: html, text
4236d4750373806b5b774c70da83ce9c59ad50bc Wed Apr 19 11:24:14 2017 -0700
Serialize clean, load, mkdirs and tests in case 'make test' is invoked with -j (multiple threads).
- src/hg/cirm/cdw/cdwRenameDataset/cdwRenameDataset.c
- lines changed 93, context: html, text, full: html, text
5d59a7698f928d9be555bf897974238cfa678f1c Thu Apr 20 13:58:11 2017 -0700
First cut of dataset renaming utility.
- lines changed 34, context: html, text, full: html, text
c7a2bf8be3b9d034ea579c9860ac2a774f05ead8 Thu Apr 20 17:39:14 2017 -0700
Polishign up cdwRenameDataset.
- src/hg/cirm/cdw/cdwRenameDataset/makefile
- lines changed 4, context: html, text, full: html, text
5d59a7698f928d9be555bf897974238cfa678f1c Thu Apr 20 13:58:11 2017 -0700
First cut of dataset renaming utility.
- src/hg/cirm/cdw/cdwRenameFiles/cdwRenameFiles.c
- lines changed 135, context: html, text, full: html, text
7aaf56b7663af02ff5dc2969238150466806e7f1 Thu Apr 20 10:28:30 2017 -0700
First cut at utility to rename submit file names in database.
- lines changed 72, context: html, text, full: html, text
d768bddae49de22bc73eab55b3b41fc6a269923a Thu Apr 20 11:18:18 2017 -0700
Added more tests and making command line simpler by directly doing moves and database updates.
- lines changed 2, context: html, text, full: html, text
a9a4aa7eb80911c7e719f539a97765189713a1c9 Thu Apr 20 11:22:23 2017 -0700
Improving usage message.
- lines changed 47, context: html, text, full: html, text
992a12b087b6cef00ad0f699d613f2abc538018b Thu Apr 20 17:46:28 2017 -0700
Moving some little new useful routines to library.
- lines changed 12, context: html, text, full: html, text
004daadb3f2a15bd1a857fae613a3cf3f4f877d9 Thu Apr 20 23:05:00 2017 -0700
Making directories if need be for new file names.
- src/hg/cirm/cdw/cdwRenameFiles/makefile
- lines changed 4, context: html, text, full: html, text
7aaf56b7663af02ff5dc2969238150466806e7f1 Thu Apr 20 10:28:30 2017 -0700
First cut at utility to rename submit file names in database.
- src/hg/cirm/cdw/cdwSubmit/cdwSubmit.c
- lines changed 4, context: html, text, full: html, text
b58b7c97c25b181a7cbb87e2fcdb1aeb1ddb0c35 Wed Apr 19 14:54:45 2017 -0700
Removing some tag validation since it is now done by tagStormCheck.
- src/hg/cirm/cdw/inc/cdwValid.h
- lines changed 9, context: html, text, full: html, text
b58b7c97c25b181a7cbb87e2fcdb1aeb1ddb0c35 Wed Apr 19 14:54:45 2017 -0700
Removing some tag validation since it is now done by tagStormCheck.
- src/hg/cirm/cdw/makefile
- lines changed 1, context: html, text, full: html, text
28467158fc3d76ac022d5aee3073a74a1bb74249 Thu Apr 20 11:35:01 2017 -0700
Adding cdwRenameFiles to make chain
- lines changed 1, context: html, text, full: html, text
c7a2bf8be3b9d034ea579c9860ac2a774f05ead8 Thu Apr 20 17:39:14 2017 -0700
Polishign up cdwRenameDataset.
- src/hg/hgHubConnect/hgHubConnect.c
- lines changed 1, context: html, text, full: html, text
bf2c869e642b5be1ad6f3542d078f155fc4d81f2 Wed Apr 19 14:08:42 2017 -0700
Removing typo of extraneous . from hubConnect redirect page, no refs
- src/hg/hgTables/schema.c
- lines changed 1, context: html, text, full: html, text
c011a3d3199ad3e0380be4107d469ba5e15fd20c Mon Apr 17 15:02:15 2017 -0700
Make 'describe table schema' button work on table browser. This makes it work for all of the big* types. refs #18736
- src/hg/hgTracks/barChartTrack.c
- lines changed 20, context: html, text, full: html, text
b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
Cleanup FIXME and TODO comments. refs #18736
- lines changed 2, context: html, text, full: html, text
db2634b37c0d5d01df1992f126eceec5ee2fd6af Wed Apr 19 08:24:21 2017 -0700
Fix map box problem causing some clicks to misfire. refs #18736
- lines changed 8, context: html, text, full: html, text
2b41f66277f1191800c203f0dbda57f1c2bbdd30 Wed Apr 19 10:00:28 2017 -0700
Add support for maxLimit trackDb setting. refs #18736
- src/hg/hgTracks/hgTracks.c
- lines changed 3, context: html, text, full: html, text
b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
Cleanup FIXME and TODO comments. refs #18736
- lines changed 2, context: html, text, full: html, text
ff93392157d51c1595a498f1ea72d881a9386468 Wed Apr 19 19:28:50 2017 -0700
Yet another place to add big* track. Fixes problem with hgTracks object missing when full mode set. Thanks Chris L. refs #18736
- src/hg/hgTracks/simpleTracks.c
- lines changed 1, context: html, text, full: html, text
b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
Cleanup FIXME and TODO comments. refs #18736
- src/hg/hgc/barChartClick.c
- lines changed 9, context: html, text, full: html, text
b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
Cleanup FIXME and TODO comments. refs #18736
- src/hg/hgc/hgcData/barChartBoxplot.R
- lines changed 4, context: html, text, full: html, text
cc629ae1ea3d781cb47fc0b78bd382842fd30789 Thu Apr 20 16:01:52 2017 -0700
Make N= visible on boxplot. refs #18736
- src/hg/htdocs/ENCODE/releaseLog.html
- lines changed 1, context: html, text, full: html, text
942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
- src/hg/htdocs/FAQ/FAQblat.html
- lines changed 1, context: html, text, full: html, text
942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
- src/hg/htdocs/FAQ/FAQlicense.html
- lines changed 2, context: html, text, full: html, text
942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
- src/hg/htdocs/FAQ/FAQreleases.html
- lines changed 1, context: html, text, full: html, text
6e441884660482307233743dfa8bc230180beaf9 Mon Apr 17 14:33:30 2017 -0700
Adding Tibetan frog to the FAQreleases.html page, refs #15056
- lines changed 1, context: html, text, full: html, text
38789b8c6a08696ea0401acae15e48ce3c3229bc Fri Apr 21 17:18:55 2017 -0700
Editing static docs for manPen1 release refs #15515
- src/hg/htdocs/admin/mirror.html
- lines changed 274, context: html, text, full: html, text
942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
- src/hg/htdocs/admin/mirrorManual.html
- lines changed 1881, context: html, text, full: html, text
942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
- src/hg/htdocs/contacts.html
- lines changed 1, context: html, text, full: html, text
942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
- src/hg/htdocs/goldenPath/credits.html
- lines changed 55, context: html, text, full: html, text
23d7cc63ddd1a6da1e9ac7575b2babd6e705964b Mon Apr 17 13:06:34 2017 -0700
Adding credits for nanPar1, refs #15056
- lines changed 37, context: html, text, full: html, text
4c6c4cd2c29ecb34a7b70560314a6792bd02baa5 Mon Apr 17 13:51:28 2017 -0700
added bison to credits page per refs #15388
- lines changed 0, context: html, text, full: html, text
e0caf7a12be656b3711bf36c769001c8090faa70 Mon Apr 17 14:03:37 2017 -0700
added bison to credtis.html per refs #15388
- lines changed 40, context: html, text, full: html, text
38789b8c6a08696ea0401acae15e48ce3c3229bc Fri Apr 21 17:18:55 2017 -0700
Editing static docs for manPen1 release refs #15515
- src/hg/htdocs/goldenPath/help/gbic.html
- lines changed 1, context: html, text, full: html, text
942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
- src/hg/htdocs/goldenPath/help/hgTablesHelp.html
- lines changed 1, context: html, text, full: html, text
942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
- lines changed 1, context: html, text, full: html, text
910d5b98de9ab3ade4a2752203511101af2cde8d Wed Apr 19 07:44:06 2017 -0700
Fixing typo as per mlq refs #19269
- src/hg/htdocs/goldenPath/help/mirror.html
- lines changed 275, context: html, text, full: html, text
f4c39d45286a52ea8cd5818ce0c04e0c02abc883 Mon Apr 17 14:14:18 2017 -0700
Moving htdocs/admin/mirror.html and htdocs/admin/mirrorManual.html to new locations in goldenPath/help. Leaving original docs in place for now, will update with an http redirect to the new files once all static docs referencing the mirror docs have been updated to point to the new location, refs #19130
- lines changed 1, context: html, text, full: html, text
942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
- src/hg/htdocs/goldenPath/help/mirrorManual.html
- lines changed 1882, context: html, text, full: html, text
f4c39d45286a52ea8cd5818ce0c04e0c02abc883 Mon Apr 17 14:14:18 2017 -0700
Moving htdocs/admin/mirror.html and htdocs/admin/mirrorManual.html to new locations in goldenPath/help. Leaving original docs in place for now, will update with an http redirect to the new files once all static docs referencing the mirror docs have been updated to point to the new location, refs #19130
- lines changed 1, context: html, text, full: html, text
942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
- src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html
- lines changed 9, context: html, text, full: html, text
367330f0cfa964222ed079084d2e65f7d8f3d709 Fri Apr 21 15:58:01 2017 -0700
Adding links to track hub mailing list ong the trackDbHub.html page.
- src/hg/htdocs/goldenPath/newsarch.html
- lines changed 19, context: html, text, full: html, text
4a86abdeb363b7035c30d03bf12fbf08d3b6401c Mon Apr 17 14:09:34 2017 -0700
Adding nanPar1 to the news archives, refs #15056
- lines changed 17, context: html, text, full: html, text
7888dcaea19c84e0f44bc49ecc569ab8dc1d5d05 Thu Apr 20 08:22:40 2017 -0700
added bison to news arch per refs #15388
- lines changed 3, context: html, text, full: html, text
bbfc011bfe8bd7e2455e78719ceb1cb390c78a91 Thu Apr 20 09:17:18 2017 -0700
corrected link for bison per refs #15388
- lines changed 3, context: html, text, full: html, text
a243b4b63295f39fc24d9025db3d50a7a23930e8 Thu Apr 20 10:27:43 2017 -0700
Adding announcement for nanPar1 and bisBis1, refs #15056
- lines changed 1, context: html, text, full: html, text
7c627565d4e541ee7968ea385611379f1f2b0a30 Fri Apr 21 09:47:12 2017 -0700
fixing broken link on HGVS Oct.17, 2016 entry no redmine
- lines changed 20, context: html, text, full: html, text
38789b8c6a08696ea0401acae15e48ce3c3229bc Fri Apr 21 17:18:55 2017 -0700
Editing static docs for manPen1 release refs #15515
- lines changed 1, context: html, text, full: html, text
d2fd73a56a12873b1f7f52a83169de9fa57791bf Mon Apr 24 10:09:15 2017 -0700
Fixing url to correct anchor for manPen1 use conditions, refs #15515
- src/hg/htdocs/goldenPath/releaseLogOld.html
- lines changed 1, context: html, text, full: html, text
942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
- src/hg/htdocs/images/phylo/galVar1.4way.png
- lines changed 0, context: html, text, full: html, text
84b4480b58ebaa582a06f4111e18dc5251cdcbd3 Thu Apr 20 11:31:34 2017 -0700
4-way alignment on galVar1 for Juergen Schmotz no redmine
- lines changed 0, context: html, text, full: html, text
b056b2cca67fa4e8a5943a90fea6061c3b2ed380 Thu Apr 20 14:11:48 2017 -0700
4-way alignment for Juergen Schmitz no redmine
- src/hg/htdocs/images/phylo/galVar1_4way.png
- lines changed 0, context: html, text, full: html, text
b056b2cca67fa4e8a5943a90fea6061c3b2ed380 Thu Apr 20 14:11:48 2017 -0700
4-way alignment for Juergen Schmitz no redmine
- src/hg/htdocs/images/phylo/hg38_4way.png
- lines changed 0, context: html, text, full: html, text
b056b2cca67fa4e8a5943a90fea6061c3b2ed380 Thu Apr 20 14:11:48 2017 -0700
4-way alignment for Juergen Schmitz no redmine
- src/hg/htdocs/images/phylo/mm10_4way.png
- lines changed 0, context: html, text, full: html, text
1b6ada65366179f9b4feeaa10963f51f8476c429 Thu Apr 20 14:48:13 2017 -0700
4-way alignment for Juergen Schmitz no redmin
- src/hg/htdocs/inc/globalNavBar.inc
- lines changed 1, context: html, text, full: html, text
942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
- src/hg/htdocs/indexNews.html
- lines changed 6, context: html, text, full: html, text
a243b4b63295f39fc24d9025db3d50a7a23930e8 Thu Apr 20 10:27:43 2017 -0700
Adding announcement for nanPar1 and bisBis1, refs #15056
- lines changed 13, context: html, text, full: html, text
38789b8c6a08696ea0401acae15e48ce3c3229bc Fri Apr 21 17:18:55 2017 -0700
Editing static docs for manPen1 release refs #15515
- src/hg/htdocs/mirror.html
- lines changed 1, context: html, text, full: html, text
942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
- src/hg/inc/barChartUi.h
- lines changed 2, context: html, text, full: html, text
cc79031e1090e9e121f7d94f0c6f909f5e77ac3c Wed Apr 19 08:39:04 2017 -0700
Tweak default view limit max for better display on current test tracks (gene expression). refs #18736
- lines changed 6, context: html, text, full: html, text
2b41f66277f1191800c203f0dbda57f1c2bbdd30 Wed Apr 19 10:00:28 2017 -0700
Add support for maxLimit trackDb setting. refs #18736
- src/hg/inc/versionInfo.h
- lines changed 1, context: html, text, full: html, text
4558738b4fb6ac1522a042b40509772845825f99 Mon Apr 24 10:35:34 2017 -0700
New version number v348
- src/hg/js/barChart.js
- lines changed 20, context: html, text, full: html, text
2fcabe1a7881fefe2f84adb2aa140ce916d883da Mon Apr 17 16:04:16 2017 -0700
Fix event handling on checkbox. refs #18736
- src/hg/js/hgTracks.js
- lines changed 9, context: html, text, full: html, text
7f3920b6ce8c28674b85c53c6541e497d68a9b18 Mon Apr 17 18:40:44 2017 -0700
Fix right-click menu. refs #18736
- src/hg/js/makefile
- lines changed 1, context: html, text, full: html, text
088062c48a74ef814d3a737bcd967e8ebec502a4 Mon Apr 17 18:39:18 2017 -0700
Fix checkbox on UI. refs *18736
- src/hg/js/utils.js
- lines changed 5, context: html, text, full: html, text
2fcabe1a7881fefe2f84adb2aa140ce916d883da Mon Apr 17 16:04:16 2017 -0700
Fix event handling on checkbox. refs #18736
- lines changed 1, context: html, text, full: html, text
2b41f66277f1191800c203f0dbda57f1c2bbdd30 Wed Apr 19 10:00:28 2017 -0700
Add support for maxLimit trackDb setting. refs #18736
- src/hg/lib/barChartCategory.c
- lines changed 1, context: html, text, full: html, text
b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
Cleanup FIXME and TODO comments. refs #18736
- src/hg/lib/barChartUi.c
- lines changed 14, context: html, text, full: html, text
2fcabe1a7881fefe2f84adb2aa140ce916d883da Mon Apr 17 16:04:16 2017 -0700
Fix event handling on checkbox. refs #18736
- lines changed 9, context: html, text, full: html, text
b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
Cleanup FIXME and TODO comments. refs #18736
- lines changed 13, context: html, text, full: html, text
2b41f66277f1191800c203f0dbda57f1c2bbdd30 Wed Apr 19 10:00:28 2017 -0700
Add support for maxLimit trackDb setting. refs #18736
- src/hg/lib/customFactory.c
- lines changed 3, context: html, text, full: html, text
b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
Cleanup FIXME and TODO comments. refs #18736
- src/hg/lib/trackDbCustom.c
- lines changed 1, context: html, text, full: html, text
b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
Cleanup FIXME and TODO comments. refs #18736
- src/hg/lib/trackHub.c
- lines changed 1, context: html, text, full: html, text
b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
Cleanup FIXME and TODO comments. refs #18736
- src/hg/makeDb/doc/criGri1.txt
- lines changed 16, context: html, text, full: html, text
23728dc5266886aa0cb32bf22b1738cb1d2ea220 Wed Apr 19 11:42:27 2017 -0700
add liftOvers between criGri1 and criGriChoV1 refs #19228
- src/hg/makeDb/doc/criGriChoV1/initialBuild.txt
- lines changed 66, context: html, text, full: html, text
f6927d332aef2c506c4ee88c47f3884754813bd8 Wed Apr 19 10:46:51 2017 -0700
loading genbank run and liftOver to criGri1 refs #19228
- lines changed 43, context: html, text, full: html, text
23728dc5266886aa0cb32bf22b1738cb1d2ea220 Wed Apr 19 11:42:27 2017 -0700
add liftOvers between criGri1 and criGriChoV1 refs #19228
- src/hg/makeDb/doc/galVar1/multiz4way.txt
- lines changed 1427, context: html, text, full: html, text
5fa39cc02a7c82ba345708b439913698647bcd46 Fri Apr 21 22:53:23 2017 -0700
adding 4-way alignment with tupChi1 for Juergen Schmitz no redmine
- src/hg/makeDb/doc/hg19.txt
- lines changed 28, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/doc/hg38/hg38.txt
- lines changed 28, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/doc/hg38/lastzRuns.txt
- lines changed 63, context: html, text, full: html, text
e3d377d9bad0ac103c113d7be88f994938852334 Wed Apr 19 10:26:03 2017 -0700
lastz chainNet to criGriChoV1 refs #19228
- src/hg/makeDb/doc/hg38/multiz4way.txt
- lines changed 1436, context: html, text, full: html, text
9fdca34a204e7c3151bf55ccf05b8f2b06095a0c Fri Apr 21 16:46:49 2017 -0700
4-way with tupChi1 for Juergen Schmitz no redmine
- src/hg/makeDb/doc/mm10.txt
- lines changed 28, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- lines changed 58, context: html, text, full: html, text
314097b00bbc24f15f594c0154215bf0d10c0972 Tue Apr 18 12:08:11 2017 -0700
lastz chainNet refs #19228
- lines changed 1422, context: html, text, full: html, text
fa50cd18cfd29029efd24065994ea588cb529612 Fri Apr 21 21:34:36 2017 -0700
adding 4-way alignment with tupChi1 for Juergen Schmitz no redmine
- src/hg/makeDb/doc/mouseStrains/GCA_001624185.1_129S1_SvImJ_v1/GCA_001624185.1_129S1_SvImJ_v1.trackDb.txt
- lines changed 9, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624185.1_129S1_SvImJ_v1/html/GCA_001624185.1_129S1_SvImJ_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624215.1_A_J_v1/GCA_001624215.1_A_J_v1.trackDb.txt
- lines changed 9, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624215.1_A_J_v1/html/GCA_001624215.1_A_J_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624295.1_AKR_J_v1/GCA_001624295.1_AKR_J_v1.trackDb.txt
- lines changed 9, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624295.1_AKR_J_v1/html/GCA_001624295.1_AKR_J_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624445.1_CAST_EiJ_v1/GCA_001624445.1_CAST_EiJ_v1.trackDb.txt
- lines changed 9, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624445.1_CAST_EiJ_v1/html/GCA_001624445.1_CAST_EiJ_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624475.1_CBA_J_v1/GCA_001624475.1_CBA_J_v1.trackDb.txt
- lines changed 9, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624475.1_CBA_J_v1/html/GCA_001624475.1_CBA_J_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624505.1_DBA_2J_v1/GCA_001624505.1_DBA_2J_v1.trackDb.txt
- lines changed 9, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624505.1_DBA_2J_v1/html/GCA_001624505.1_DBA_2J_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624535.1_FVB_NJ_v1/GCA_001624535.1_FVB_NJ_v1.trackDb.txt
- lines changed 9, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624535.1_FVB_NJ_v1/html/GCA_001624535.1_FVB_NJ_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624675.1_NOD_ShiLtJ_v1/GCA_001624675.1_NOD_ShiLtJ_v1.trackDb.txt
- lines changed 9, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624675.1_NOD_ShiLtJ_v1/html/GCA_001624675.1_NOD_ShiLtJ_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624745.1_NZO_HlLtJ_v1/GCA_001624745.1_NZO_HlLtJ_v1.trackDb.txt
- lines changed 9, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624745.1_NZO_HlLtJ_v1/html/GCA_001624745.1_NZO_HlLtJ_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624775.1_PWK_PhJ_v1/GCA_001624775.1_PWK_PhJ_v1.trackDb.txt
- lines changed 9, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624775.1_PWK_PhJ_v1/html/GCA_001624775.1_PWK_PhJ_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624835.1_WSB_EiJ_v1/GCA_001624835.1_WSB_EiJ_v1.trackDb.txt
- lines changed 9, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624835.1_WSB_EiJ_v1/html/GCA_001624835.1_WSB_EiJ_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624865.1_SPRET_EiJ_v1/GCA_001624865.1_SPRET_EiJ_v1.trackDb.txt
- lines changed 9, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624865.1_SPRET_EiJ_v1/html/GCA_001624865.1_SPRET_EiJ_v1.gapOverlap.html
- lines changed 0, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001632525.1_BALB_cJ_v1/GCA_001632525.1_BALB_cJ_v1.trackDb.txt
- lines changed 9, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001632525.1_BALB_cJ_v1/html/GCA_001632525.1_BALB_cJ_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001632555.1_C57BL_6NJ_v1/GCA_001632555.1_C57BL_6NJ_v1.trackDb.txt
- lines changed 9, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001632555.1_C57BL_6NJ_v1/html/GCA_001632555.1_C57BL_6NJ_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001632575.1_C3H_HeJ_v1/GCA_001632575.1_C3H_HeJ_v1.trackDb.txt
- lines changed 9, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001632575.1_C3H_HeJ_v1/html/GCA_001632575.1_C3H_HeJ_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001632615.1_LP_J_v1/GCA_001632615.1_LP_J_v1.trackDb.txt
- lines changed 18, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001632615.1_LP_J_v1/html/GCA_001632615.1_LP_J_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/GCA_900094665.1_CAROLI_EIJ_v1.trackDb.txt
- lines changed 224, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.allGaps.html
- lines changed 28, context: html, text, full: html, text
38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
catching up Mus caroli assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.assembly.html
- lines changed 33, context: html, text, full: html, text
38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
catching up Mus caroli assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.augustus.html
- lines changed 106, context: html, text, full: html, text
38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
catching up Mus caroli assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.build.stats.txt
- lines changed 1, context: html, text, full: html, text
38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
catching up Mus caroli assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.cpgIslands.html
- lines changed 84, context: html, text, full: html, text
38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
catching up Mus caroli assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.description.html
- lines changed 89, context: html, text, full: html, text
38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
catching up Mus caroli assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.gap.html
- lines changed 31, context: html, text, full: html, text
38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
catching up Mus caroli assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.gc5Base.html
- lines changed 21, context: html, text, full: html, text
38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
catching up Mus caroli assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.names.tab
- lines changed 6, context: html, text, full: html, text
38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
catching up Mus caroli assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.repeatMasker.html
- lines changed 150, context: html, text, full: html, text
38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
catching up Mus caroli assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.simpleRepeat.html
- lines changed 48, context: html, text, full: html, text
38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
catching up Mus caroli assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.windowMasker.html
- lines changed 38, context: html, text, full: html, text
38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
catching up Mus caroli assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/GCA_001624865.1_SPRET_EiJ_v1.trackDb.txt
- lines changed 229, context: html, text, full: html, text
ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
catching up trackDb to add gapOverlap track refs #13553
- lines changed 229, context: html, text, full: html, text
50827e9e55e77dec673bf470d9be76be34137c00 Wed Apr 19 15:10:26 2017 -0700
correct trackDb for pahari refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/GCA_900095145.1_PAHARI_EIJ_v1.trackDb.txt
- lines changed 224, context: html, text, full: html, text
50827e9e55e77dec673bf470d9be76be34137c00 Wed Apr 19 15:10:26 2017 -0700
correct trackDb for pahari refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.allGaps.html
- lines changed 28, context: html, text, full: html, text
c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
catching up Mus pahari assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.assembly.html
- lines changed 33, context: html, text, full: html, text
c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
catching up Mus pahari assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.augustus.html
- lines changed 106, context: html, text, full: html, text
c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
catching up Mus pahari assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.cpgIslands.html
- lines changed 84, context: html, text, full: html, text
c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
catching up Mus pahari assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.description.html
- lines changed 89, context: html, text, full: html, text
c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
catching up Mus pahari assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.gap.html
- lines changed 31, context: html, text, full: html, text
c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
catching up Mus pahari assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.gapOverlap.html
- lines changed 44, context: html, text, full: html, text
e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
adding gapOverlap.html refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.gc5Base.html
- lines changed 21, context: html, text, full: html, text
c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
catching up Mus pahari assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.names.tab
- lines changed 6, context: html, text, full: html, text
c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
catching up Mus pahari assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.repeatMasker.html
- lines changed 150, context: html, text, full: html, text
c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
catching up Mus pahari assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.simpleRepeat.html
- lines changed 48, context: html, text, full: html, text
c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
catching up Mus pahari assembly refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.windowMasker.html
- lines changed 38, context: html, text, full: html, text
c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
catching up Mus pahari assembly refs #13553
- src/hg/makeDb/genbank/etc/align.dbs
- lines changed 1, context: html, text, full: html, text
ad5c9b269dfadd165133d9cc6f702d77b9dd0aa5 Wed Apr 19 10:52:44 2017 -0700
adding criGriChoV1 to the update alignments refs #19228
- src/hg/makeDb/genbank/etc/hgwbeta.dbs
- lines changed 1, context: html, text, full: html, text
ffbaa24f43f2e53c9da23f80dd99ecd5f8b3a025 Wed Apr 19 16:47:56 2017 -0700
Adding manPen1, refs #15515
- src/hg/makeDb/genbank/etc/hgwdev.dbs
- lines changed 1, context: html, text, full: html, text
ad5c9b269dfadd165133d9cc6f702d77b9dd0aa5 Wed Apr 19 10:52:44 2017 -0700
adding criGriChoV1 to the update alignments refs #19228
- src/hg/makeDb/genbank/etc/rr.dbs
- lines changed 1, context: html, text, full: html, text
c14a200a3654d5a862c7f679b6af7ce141bc0a1d Fri Apr 14 11:17:06 2017 -0700
Turning on Genbank updates for nanPar1, refs #15056
- lines changed 1, context: html, text, full: html, text
3e0cebe88f96612c739b4a4ed842418363314620 Thu Apr 20 17:28:27 2017 -0700
Enabling rr Genbank updates for manPen1, refs #15515
- src/hg/makeDb/outside/gencode/gencodeGenerateTrackDbs
- lines changed 631, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/outside/gencode/gencodeLoad.mk
- lines changed 81, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/schema/all.joiner
- lines changed 273, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- lines changed 10, context: html, text, full: html, text
261cc77bd958e5910320428eabb7e1cc265053e2 Wed Apr 19 10:44:26 2017 -0700
adding criGriChoV1 rules refs #19228
- lines changed 15, context: html, text, full: html, text
f1d187773d2ca5413ef0fef31f8c7fa1edd1ff07 Thu Apr 20 16:37:50 2017 -0700
Fixing some ancient all.joiner problems for rn4 rules, refs #7095
- src/hg/makeDb/trackDb/contigOverlaps.html
- lines changed 36, context: html, text, full: html, text
c1a6825d1818e050b30ffa0bf91a9abed26b613d Thu Apr 20 12:17:31 2017 -0700
remove out of date file refs #19247
- src/hg/makeDb/trackDb/galVar/galVar1/cons4way.html
- lines changed 417, context: html, text, full: html, text
3af0d99192a1e3c83c102f023c4e0c9a9e9c66f5 Fri Apr 21 17:33:00 2017 -0700
adding 4-way with tupChi1 in place of tupBel1 for Juergen Schmitz no redmine
- src/hg/makeDb/trackDb/galVar/galVar1/trackDb.4way.ra
- lines changed 102, context: html, text, full: html, text
3af0d99192a1e3c83c102f023c4e0c9a9e9c66f5 Fri Apr 21 17:33:00 2017 -0700
adding 4-way with tupChi1 in place of tupBel1 for Juergen Schmitz no redmine
- src/hg/makeDb/trackDb/galVar/galVar1/trackDb.5way.ra
- lines changed 1, context: html, text, full: html, text
3af0d99192a1e3c83c102f023c4e0c9a9e9c66f5 Fri Apr 21 17:33:00 2017 -0700
adding 4-way with tupChi1 in place of tupBel1 for Juergen Schmitz no redmine
- src/hg/makeDb/trackDb/galVar/galVar1/trackDb.ra
- lines changed 2, context: html, text, full: html, text
3af0d99192a1e3c83c102f023c4e0c9a9e9c66f5 Fri Apr 21 17:33:00 2017 -0700
adding 4-way with tupChi1 in place of tupBel1 for Juergen Schmitz no redmine
- src/hg/makeDb/trackDb/gapOverlap.html
- lines changed 37, context: html, text, full: html, text
7a5b72bdf0df6ce3c51506b9f591ae694393754e Wed Apr 19 14:41:05 2017 -0700
updated contigOverlap.html and renamed refs #19228
- src/hg/makeDb/trackDb/human/chainNetPlacental.ra
- lines changed 1, context: html, text, full: html, text
9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
- src/hg/makeDb/trackDb/human/chainNetPrimate.ra
- lines changed 1, context: html, text, full: html, text
9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
- src/hg/makeDb/trackDb/human/chainNetVertebrate.ra
- lines changed 1, context: html, text, full: html, text
9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
- src/hg/makeDb/trackDb/human/hg16/trackDb.chainNet.ra
- lines changed 6, context: html, text, full: html, text
cdb03338822955b3ad42895e520ca65ca25c7c61 Tue Apr 18 09:49:27 2017 -0700
Sorting the Comparative Genomics group by alphabetical order for hg16, refs #19187
- src/hg/makeDb/trackDb/human/hg16/trackDb.ra
- lines changed 6, context: html, text, full: html, text
cdb03338822955b3ad42895e520ca65ca25c7c61 Tue Apr 18 09:49:27 2017 -0700
Sorting the Comparative Genomics group by alphabetical order for hg16, refs #19187
- src/hg/makeDb/trackDb/human/hg17/trackDb.chainNet.ra
- lines changed 15, context: html, text, full: html, text
7e312d64ba560416d70c46187ed9961250fed8ad Wed Apr 19 08:00:10 2017 -0700
Re-ordering the Comparative Genomics Group for hg17, refs #19187
- src/hg/makeDb/trackDb/human/hg17/trackDb.ra
- lines changed 10, context: html, text, full: html, text
7e312d64ba560416d70c46187ed9961250fed8ad Wed Apr 19 08:00:10 2017 -0700
Re-ordering the Comparative Genomics Group for hg17, refs #19187
- lines changed 48, context: html, text, full: html, text
80a95b1ac8ae7e4bd30c032c7cfb379f762ba580 Wed Apr 19 09:36:06 2017 -0700
Sorting the Variation and Repeats group by alphabetical order for hg17, refs #19187
- src/hg/makeDb/trackDb/human/hg18/trackDb.chainNet.ra
- lines changed 64, context: html, text, full: html, text
e708e8912e9a8b059c154c438eab97a44c9ef141 Wed Apr 19 11:45:11 2017 -0700
Sorting the Comparative Genomics group by alphabetical order for hg18, refs #19187
- src/hg/makeDb/trackDb/human/hg18/trackDb.encode.ra
- lines changed 8, context: html, text, full: html, text
059a3cfb4a435c6c40e4283d65f3bd30026e186c Thu Apr 20 13:57:53 2017 -0700
Sorting the Pilot ENCODE Chromatin Immunoprecipitation by alphabetical order for hg18, refs #19187
- src/hg/makeDb/trackDb/human/hg18/trackDb.encodeChip.ra
- lines changed 5, context: html, text, full: html, text
059a3cfb4a435c6c40e4283d65f3bd30026e186c Thu Apr 20 13:57:53 2017 -0700
Sorting the Pilot ENCODE Chromatin Immunoprecipitation by alphabetical order for hg18, refs #19187
- src/hg/makeDb/trackDb/human/hg18/trackDb.encodeChrom.ra
- lines changed 8, context: html, text, full: html, text
c33c61634df7c9a622e29af3913d260fa41abe65 Wed Apr 19 13:45:58 2017 -0700
Sorting the Pilot ENCODE Chromatin Structure group for hg18, refs #19187
- src/hg/makeDb/trackDb/human/hg18/trackDb.ra
- lines changed 15, context: html, text, full: html, text
e708e8912e9a8b059c154c438eab97a44c9ef141 Wed Apr 19 11:45:11 2017 -0700
Sorting the Comparative Genomics group by alphabetical order for hg18, refs #19187
- src/hg/makeDb/trackDb/human/hg19/defaultPriority.ra
- lines changed 1, context: html, text, full: html, text
9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
- src/hg/makeDb/trackDb/human/hg19/trackDb.chainNet.ra
- lines changed 3, context: html, text, full: html, text
9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra
- lines changed 142, context: html, text, full: html, text
9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
- lines changed 1, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra
- lines changed 1, context: html, text, full: html, text
9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.ra
- lines changed 1, context: html, text, full: html, text
9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html
- lines changed 5, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV26lift37.html
- lines changed 49, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV26lift37.ra
- lines changed 223, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisDnaPet.ra
- lines changed 1, context: html, text, full: html, text
9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.release2.ra
- lines changed 1, context: html, text, full: html, text
9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.release2.ra
- lines changed 1, context: html, text, full: html, text
9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release4.ra
- lines changed 1, context: html, text, full: html, text
9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSuper.release2.ra
- lines changed 3, context: html, text, full: html, text
9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
- src/hg/makeDb/trackDb/human/hg38/cons4way.html
- lines changed 417, context: html, text, full: html, text
0fe12971325f08fdf4960957f37ec035b4b577bc Fri Apr 21 17:52:51 2017 -0700
adding 4-way alignment with tupChi1 for Juergen Schmitz no redmine
- src/hg/makeDb/trackDb/human/hg38/defaultPriority.ra
- lines changed 1, context: html, text, full: html, text
952a1b3e985892d30a207eb98ae66ae62d7c1896 Fri Apr 21 15:13:21 2017 -0700
Sorting the Mapping and Sequencing group for hg38, refs 19187
- src/hg/makeDb/trackDb/human/hg38/trackDb.20way.ra
- lines changed 1, context: html, text, full: html, text
5f0c14d2c4f2f601d0f177e0158d09ca1b1ddeca Fri Apr 21 15:47:13 2017 -0700
Sorting the track by alphabetical order in the Comparative Genomics group for hg38, refs 19187
- src/hg/makeDb/trackDb/human/hg38/trackDb.4way.ra
- lines changed 102, context: html, text, full: html, text
0fe12971325f08fdf4960957f37ec035b4b577bc Fri Apr 21 17:52:51 2017 -0700
adding 4-way alignment with tupChi1 for Juergen Schmitz no redmine
- src/hg/makeDb/trackDb/human/hg38/trackDb.ra
- lines changed 20, context: html, text, full: html, text
04df245028c6186c7807ddf4bc3253af2b449608 Fri Apr 21 09:30:06 2017 -0700
Cleanup of barchart test track stanzas. More to come. refs #18736
- lines changed 1, context: html, text, full: html, text
952a1b3e985892d30a207eb98ae66ae62d7c1896 Fri Apr 21 15:13:21 2017 -0700
Sorting the Mapping and Sequencing group for hg38, refs 19187
- lines changed 1, context: html, text, full: html, text
5f0c14d2c4f2f601d0f177e0158d09ca1b1ddeca Fri Apr 21 15:47:13 2017 -0700
Sorting the track by alphabetical order in the Comparative Genomics group for hg38, refs 19187
- lines changed 59, context: html, text, full: html, text
0b5cd8c691ed013941e6ad36168500e21154a42d Fri Apr 21 16:16:29 2017 -0700
Sorting the Variation group by alphabetical order and the newest version first for the SNP tracks, refs #19187
- lines changed 8, context: html, text, full: html, text
af650f2c17579e5ccb6e48470b466eb52298ecf7 Fri Apr 21 16:46:45 2017 -0700
Sorting the Repeats group by alphabetical order for hg38, refs #19187
- lines changed 1, context: html, text, full: html, text
0fe12971325f08fdf4960957f37ec035b4b577bc Fri Apr 21 17:52:51 2017 -0700
adding 4-way alignment with tupChi1 for Juergen Schmitz no redmine
- src/hg/makeDb/trackDb/human/hg38/trackDb.wgEncode.ra
- lines changed 1, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeSuper.html
- lines changed 5, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV19.html
- lines changed 286, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV20.html
- lines changed 289, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV21.html
- lines changed 285, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV22.html
- lines changed 327, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV23.html
- lines changed 324, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV24.html
- lines changed 322, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV25.html
- lines changed 322, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV26.html
- lines changed 47, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV26.ra
- lines changed 266, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/mouse/mm10/cons4way.html
- lines changed 417, context: html, text, full: html, text
51fa7206d8387f05056d52344637438aff75e357 Fri Apr 21 21:37:20 2017 -0700
adding mm10 4-way alignment with tupChi1 for Juergen Schmitz no redmine
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.4way.ra
- lines changed 102, context: html, text, full: html, text
51fa7206d8387f05056d52344637438aff75e357 Fri Apr 21 21:37:20 2017 -0700
adding mm10 4-way alignment with tupChi1 for Juergen Schmitz no redmine
- lines changed 1, context: html, text, full: html, text
1df4bd81ec254ef18855c4f0854072cb04d22c9f Fri Apr 21 23:26:02 2017 -0700
correct name on phyloP track no redmine
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
- lines changed 3, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- lines changed 1, context: html, text, full: html, text
51fa7206d8387f05056d52344637438aff75e357 Fri Apr 21 21:37:20 2017 -0700
adding mm10 4-way alignment with tupChi1 for Juergen Schmitz no redmine
- src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeCredits1.shared.html
- lines changed 110, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeDisplay1.shared.html
- lines changed 238, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeSuper.html
- lines changed 1, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM10.html
- lines changed 319, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM11.html
- lines changed 319, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM12.html
- lines changed 319, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM13.html
- lines changed 30, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM13.ra
- lines changed 266, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM2.html
- lines changed 283, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM3.html
- lines changed 283, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM4.html
- lines changed 283, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM7.html
- lines changed 319, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM8.html
- lines changed 319, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM9.html
- lines changed 319, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/pangolin/manPen1/trackDb.ra
- lines changed 4, context: html, text, full: html, text
c6c461d939bd6a85d0f5bd6dc152eadd5be70248 Fri Apr 21 14:49:13 2017 -0700
Turning on augustusGene by default for manPen1, refs #15515
- src/hg/makeDb/trackDb/tagTypes.tab
- lines changed 5, context: html, text, full: html, text
cdddc58560530eb5a7a2e3deb0cad4fd567a2853 Thu Apr 20 17:00:30 2017 -0700
Add remainder of barChart settings. refs #18736
- src/hg/makeDb/trackDb/trackDb.transMap.ra
- lines changed 10, context: html, text, full: html, text
ab84b155b2310d1141ddac774115cd6af47b74ae Tue Apr 18 13:04:22 2017 -0700
Changing long/shortLabels to be in line wiht our guidelines, #18818
- lines changed 5, context: html, text, full: html, text
fc21e24fb39d1611f5d365b316a6e65a56820d64 Wed Apr 19 08:11:42 2017 -0700
Adding beta release tag to transMap V4 tracks, refs #18818
- src/hg/makeDb/trackDb/wgEncodeGencodeCredits1.shared.html
- lines changed 110, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/makeDb/trackDb/wgEncodeGencodeDisplay1.shared.html
- lines changed 238, context: html, text, full: html, text
2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
- src/hg/oneShot/freen/freen.c
- lines changed 73, context: html, text, full: html, text
0c9a3906522dcea7de19a168ab66a485a0e92259 Wed Mar 22 14:17:28 2017 -0700
Testing out some new code for identifying SQL reserved words.
- src/hg/utils/automation/HgAutomate.pm
- lines changed 10, context: html, text, full: html, text
69dfe94a49d2985183f5a63148b03fb626e940c1 Tue Apr 18 12:09:36 2017 -0700
add databaseExists and constructing bigBed gapOverlap result refs #19338
- src/hg/utils/automation/doDbSnp.pl
- lines changed 1, context: html, text, full: html, text
ecf978829e5139141d15767aaafcccdd76b0ec1d Mon Apr 17 14:39:31 2017 -0700
Oops, in 42fd1b9f I removed *.tab from the final workDir gzip command after moving out snpNNNSeq.tab into a separate step, but there is still snpNNNExceptionDesc.tab that the load step expects to find gzipped. refs #18330
- src/hg/utils/automation/doGapOverlap.pl
- lines changed 16, context: html, text, full: html, text
32522a28f00d0358694a9faad29efb63bf8374d7 Fri Apr 14 15:06:19 2017 -0700
correctly avoid running on empty results refs #19338
- lines changed 39, context: html, text, full: html, text
69dfe94a49d2985183f5a63148b03fb626e940c1 Tue Apr 18 12:09:36 2017 -0700
add databaseExists and constructing bigBed gapOverlap result refs #19338
- lines changed 3, context: html, text, full: html, text
ea9e468626d6e477199416b03cf880e3fd57ddaf Wed Apr 19 22:52:28 2017 -0700
do not load empty files refs #19228
- lines changed 7, context: html, text, full: html, text
08071178d0f2a2be1ef71bdfe627c1afad60444b Thu Apr 20 12:16:43 2017 -0700
remove template comment block refs #19247
- src/hg/utils/makefile
- lines changed 10, context: html, text, full: html, text
eed6b3f36a8c1f8095592f35abe979f82656b2ed Thu Apr 20 10:32:35 2017 -0700
Adding vai.pl to SCRIPTS and to a new var, USER_APP_SCRIPTS, and new target %.userAppScript that installs the script in ${DESTDIR}${BINDIR} so userApps does not require the scripts directory to be added to user's PATH, per discussion with Hiram. refs #12216
- src/inc/fieldedTable.h
- lines changed 1, context: html, text, full: html, text
7aaf56b7663af02ff5dc2969238150466806e7f1 Thu Apr 20 10:28:30 2017 -0700
First cut at utility to rename submit file names in database.
- lines changed 6, context: html, text, full: html, text
992a12b087b6cef00ad0f699d613f2abc538018b Thu Apr 20 17:46:28 2017 -0700
Moving some little new useful routines to library.
- src/inc/gitSha1.h
- lines changed 73, context: html, text, full: html, text
58f94bd4988cf7a97cf2dd4222e6cd62513a88ed Wed Apr 19 17:44:24 2017 -0700
Adding free opensource fast SHA1 from git. This is primarily inteded for hashing to quickly checking if files are identical. It can run quickly on a block of RAM or on a file. You can get raw binary values or hex string.
- lines changed 73, context: html, text, full: html, text
fa5419167433c0bf67c95aea3bf10d248ca43657 Thu Apr 20 14:13:05 2017 -0700
Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.
- src/inc/obscure.h
- lines changed 3, context: html, text, full: html, text
992a12b087b6cef00ad0f699d613f2abc538018b Thu Apr 20 17:46:28 2017 -0700
Moving some little new useful routines to library.
- src/inc/sha1.h
- lines changed 40, context: html, text, full: html, text
fa5419167433c0bf67c95aea3bf10d248ca43657 Thu Apr 20 14:13:05 2017 -0700
Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.
- src/inc/sqlReserved.h
- lines changed 19, context: html, text, full: html, text
6fb0e2245aeebcc8bf19d60bd2c68849d2c4110a Wed Mar 22 14:24:49 2017 -0700
Making library for identifying sql reserved words.
- src/lib/fieldedTable.c
- lines changed 6, context: html, text, full: html, text
7aaf56b7663af02ff5dc2969238150466806e7f1 Thu Apr 20 10:28:30 2017 -0700
First cut at utility to rename submit file names in database.
- lines changed 33, context: html, text, full: html, text
992a12b087b6cef00ad0f699d613f2abc538018b Thu Apr 20 17:46:28 2017 -0700
Moving some little new useful routines to library.
- src/lib/gitSha1.c
- lines changed 393, context: html, text, full: html, text
58f94bd4988cf7a97cf2dd4222e6cd62513a88ed Wed Apr 19 17:44:24 2017 -0700
Adding free opensource fast SHA1 from git. This is primarily inteded for hashing to quickly checking if files are identical. It can run quickly on a block of RAM or on a file. You can get raw binary values or hex string.
- lines changed 393, context: html, text, full: html, text
fa5419167433c0bf67c95aea3bf10d248ca43657 Thu Apr 20 14:13:05 2017 -0700
Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.
- src/lib/makefile
- lines changed 1, context: html, text, full: html, text
6fb0e2245aeebcc8bf19d60bd2c68849d2c4110a Wed Mar 22 14:24:49 2017 -0700
Making library for identifying sql reserved words.
- lines changed 1, context: html, text, full: html, text
58f94bd4988cf7a97cf2dd4222e6cd62513a88ed Wed Apr 19 17:44:24 2017 -0700
Adding free opensource fast SHA1 from git. This is primarily inteded for hashing to quickly checking if files are identical. It can run quickly on a block of RAM or on a file. You can get raw binary values or hex string.
- lines changed 2, context: html, text, full: html, text
fa5419167433c0bf67c95aea3bf10d248ca43657 Thu Apr 20 14:13:05 2017 -0700
Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.
- src/lib/mgPolygon.c
- lines changed 182, context: html, text, full: html, text
bf45b61deb8e09918d17d44459a087536ab95588 Wed Apr 19 14:56:50 2017 -0700
Removing some unused flaky code.
- src/lib/net.c
- lines changed 2, context: html, text, full: html, text
5789a89fb3a1e8b8adabcb6447bcb190d010b0ad Fri Apr 21 11:40:20 2017 -0700
Adding more specific range start and end to error message.
- src/lib/obscure.c
- lines changed 13, context: html, text, full: html, text
992a12b087b6cef00ad0f699d613f2abc538018b Thu Apr 20 17:46:28 2017 -0700
Moving some little new useful routines to library.
- src/lib/sha1.c
- lines changed 242, context: html, text, full: html, text
fa5419167433c0bf67c95aea3bf10d248ca43657 Thu Apr 20 14:13:05 2017 -0700
Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.
- lines changed 1, context: html, text, full: html, text
5148ded61163c9564fdffdf5d72e43208cc166b2 Sat Apr 22 03:00:54 2017 -0700
Changed unnecessary and unavailable fread_unlocked to simply use fread instead.
- src/lib/sqlReserved.c
- lines changed 62, context: html, text, full: html, text
6fb0e2245aeebcc8bf19d60bd2c68849d2c4110a Wed Mar 22 14:24:49 2017 -0700
Making library for identifying sql reserved words.
- lines changed 3, context: html, text, full: html, text
e6d742b5b92002178ee39008f33c9e28fb5fbabf Wed Mar 22 14:47:30 2017 -0700
Adding copyright.
- src/lib/tagStorm.c
- lines changed 3, context: html, text, full: html, text
e6d742b5b92002178ee39008f33c9e28fb5fbabf Wed Mar 22 14:47:30 2017 -0700
Adding copyright.
- src/lib/tagToSql.c
- lines changed 13, context: html, text, full: html, text
439a7a0ec19fcfc5140f58f7e630341ae13de5e9 Wed Mar 22 14:48:22 2017 -0700
Checking for SQL reserved words and adding copyright.
- src/lib/tests/gitSha1Test.c
- lines changed 139, context: html, text, full: html, text
58f94bd4988cf7a97cf2dd4222e6cd62513a88ed Wed Apr 19 17:44:24 2017 -0700
Adding free opensource fast SHA1 from git. This is primarily inteded for hashing to quickly checking if files are identical. It can run quickly on a block of RAM or on a file. You can get raw binary values or hex string.
- lines changed 13, context: html, text, full: html, text
cd666467bcf8b60156c95e0a333b1a84ace94e15 Thu Apr 20 14:02:32 2017 -0700
little fixes
- lines changed 142, context: html, text, full: html, text
fa5419167433c0bf67c95aea3bf10d248ca43657 Thu Apr 20 14:13:05 2017 -0700
Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.
- src/lib/tests/makefile
- lines changed 5, context: html, text, full: html, text
58f94bd4988cf7a97cf2dd4222e6cd62513a88ed Wed Apr 19 17:44:24 2017 -0700
Adding free opensource fast SHA1 from git. This is primarily inteded for hashing to quickly checking if files are identical. It can run quickly on a block of RAM or on a file. You can get raw binary values or hex string.
- lines changed 3, context: html, text, full: html, text
fa5419167433c0bf67c95aea3bf10d248ca43657 Thu Apr 20 14:13:05 2017 -0700
Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.
- lines changed 1, context: html, text, full: html, text
d803f7833e42fa7578a56a8352a478ff695a1e38 Fri Apr 21 09:41:26 2017 -0700
oops missed one in makefile
- src/lib/tests/sha1Test.c
- lines changed 221, context: html, text, full: html, text
fa5419167433c0bf67c95aea3bf10d248ca43657 Thu Apr 20 14:13:05 2017 -0700
Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.
- lines changed 2, context: html, text, full: html, text
5148ded61163c9564fdffdf5d72e43208cc166b2 Sat Apr 22 03:00:54 2017 -0700
Changed unnecessary and unavailable fread_unlocked to simply use fread instead.
- src/lib/udc.c
- lines changed 6, context: html, text, full: html, text
d1abfc7a22070300f05d476ae0fa66315094a311 Fri Apr 21 12:00:16 2017 -0700
Adding double-check to udc. The url passed in should not have any byterange on it.
- src/product/installer/README.md
- lines changed 1, context: html, text, full: html, text
942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
- src/product/mirrorDocs/makefile
- lines changed 4, context: html, text, full: html, text
942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
- src/tagStorm/python/tagStorm.py
- lines changed 328, context: html, text, full: html, text
9fefa84ea2dc572c235b15f3fba1454c5a83f7d0 Wed Apr 19 12:18:15 2017 -0700
Adding python implementation of tagStorm libraries for the tagStorm manuscript, no redmine
- src/tagStorm/tagStormCheck/tagStormCheck.c
- lines changed 20, context: html, text, full: html, text
cfcae73921942ac31e61da15ef6f1dd9e1bdb479 Wed Mar 22 14:35:07 2017 -0700
Making program by default also check that tags are not SQL reserved words.
- lines changed 8, context: html, text, full: html, text
79b2e04b9a9ce10987f89db0e12e0e79c75d87f1 Wed Apr 19 10:19:22 2017 -0700
Adding a null value check.
- src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed
- lines changed 236, context: html, text, full: html, text
3e05ac599db2f7a03948d96f5e24de16095fa70c Fri Apr 21 14:34:25 2017 -0700
Python script for converting an expression matrix into a barchart bed, refs #19155
- lines changed 3, context: html, text, full: html, text
cb480f172185464534e839cffc8cc04fb2888e77 Fri Apr 21 14:38:19 2017 -0700
Updating the usage statement, refs #19155
- src/utils/expMatrixToBarchartBed/makefile
- lines changed 6, context: html, text, full: html, text
3e05ac599db2f7a03948d96f5e24de16095fa70c Fri Apr 21 14:34:25 2017 -0700
Python script for converting an expression matrix into a barchart bed, refs #19155
- src/utils/expMatrixToBarchartBed/tests/makefile
- lines changed 4, context: html, text, full: html, text
3e05ac599db2f7a03948d96f5e24de16095fa70c Fri Apr 21 14:34:25 2017 -0700
Python script for converting an expression matrix into a barchart bed, refs #19155
- src/utils/expMatrixToBarchartBed/tests/test.coords
- lines changed 10, context: html, text, full: html, text
3e05ac599db2f7a03948d96f5e24de16095fa70c Fri Apr 21 14:34:25 2017 -0700
Python script for converting an expression matrix into a barchart bed, refs #19155
- src/utils/expMatrixToBarchartBed/tests/test.matrix
- lines changed 11, context: html, text, full: html, text
3e05ac599db2f7a03948d96f5e24de16095fa70c Fri Apr 21 14:34:25 2017 -0700
Python script for converting an expression matrix into a barchart bed, refs #19155
- src/utils/expMatrixToBarchartBed/tests/test.meta
- lines changed 8, context: html, text, full: html, text
3e05ac599db2f7a03948d96f5e24de16095fa70c Fri Apr 21 14:34:25 2017 -0700
Python script for converting an expression matrix into a barchart bed, refs #19155
- src/utils/expMatrixToBarchartBed/tests/test.output
- lines changed 11, context: html, text, full: html, text
3e05ac599db2f7a03948d96f5e24de16095fa70c Fri Apr 21 14:34:25 2017 -0700
Python script for converting an expression matrix into a barchart bed, refs #19155
- src/utils/makefile
- lines changed 2, context: html, text, full: html, text
3f3872bdc25b12cda856dacf66679dcf9c8f283d Wed Apr 19 15:49:21 2017 -0700
no need to deliver gitTools scripts in userApps, good enough to deliver only in-house no redmine
- lines changed 2, context: html, text, full: html, text
3e05ac599db2f7a03948d96f5e24de16095fa70c Fri Apr 21 14:34:25 2017 -0700
Python script for converting an expression matrix into a barchart bed, refs #19155
- src/utils/qa/joinerBatchKeys.csh
- lines changed 1, context: html, text, full: html, text
3837053174a8f39a555150e38d8763ef25309c90 Wed Apr 19 16:24:35 2017 -0700
Modifying joiner batch scripts so non soe emails still receive notifications that the scripts are done, no refs
- src/utils/qa/joinerBatchTimes.csh
- lines changed 1, context: html, text, full: html, text
3837053174a8f39a555150e38d8763ef25309c90 Wed Apr 19 16:24:35 2017 -0700
Modifying joiner batch scripts so non soe emails still receive notifications that the scripts are done, no refs
- src/utils/qa/weeklybld/buildEnv.csh
- lines changed 3, context: html, text, full: html, text
c094b650e99784b7311d20975a26bfbdd3af45c8 Mon Apr 24 10:29:38 2017 -0700
v348 final build refs #19231
- lines changed: 25343
- files changed: 296