All File Changes

v348_preview2 to v348_base (2017-04-17 to 2017-04-24) v348

• src/hg/checkTableCoords/tests/input/fakeChromInfo.sql
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    10b21f9d8b8d7c84adc2d79e559811f66c7dda0c Wed Apr 19 11:21:56 2017 -0700
    Make fakeChromInfo safer by limiting it to the test database. Would be a shame to blow away some other database's chromInfo by accident. :)
• src/hg/checkTableCoords/tests/makefile
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    4236d4750373806b5b774c70da83ce9c59ad50bc Wed Apr 19 11:24:14 2017 -0700
    Serialize clean, load, mkdirs and tests in case 'make test' is invoked with -j (multiple threads).
• src/hg/cirm/cdw/cdwRenameDataset/cdwRenameDataset.c
  • lines changed 93, context: html, text, full: html, text
    5d59a7698f928d9be555bf897974238cfa678f1c Thu Apr 20 13:58:11 2017 -0700
    First cut of dataset renaming utility.
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    c7a2bf8be3b9d034ea579c9860ac2a774f05ead8 Thu Apr 20 17:39:14 2017 -0700
    Polishign up cdwRenameDataset.
• src/hg/cirm/cdw/cdwRenameDataset/makefile
  • lines changed 4, context: html, text, full: html, text
    5d59a7698f928d9be555bf897974238cfa678f1c Thu Apr 20 13:58:11 2017 -0700
    First cut of dataset renaming utility.
• src/hg/cirm/cdw/cdwRenameFiles/cdwRenameFiles.c
  • lines changed 135, context: html, text, full: html, text
    7aaf56b7663af02ff5dc2969238150466806e7f1 Thu Apr 20 10:28:30 2017 -0700
    First cut at utility to rename submit file names in database.
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    d768bddae49de22bc73eab55b3b41fc6a269923a Thu Apr 20 11:18:18 2017 -0700
    Added more tests and making command line simpler by directly doing moves and database updates.
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    a9a4aa7eb80911c7e719f539a97765189713a1c9 Thu Apr 20 11:22:23 2017 -0700
    Improving usage message.
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    992a12b087b6cef00ad0f699d613f2abc538018b Thu Apr 20 17:46:28 2017 -0700
    Moving some little new useful routines to library.
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    004daadb3f2a15bd1a857fae613a3cf3f4f877d9 Thu Apr 20 23:05:00 2017 -0700
    Making directories if need be for new file names.
• src/hg/cirm/cdw/cdwRenameFiles/makefile
  • lines changed 4, context: html, text, full: html, text
    7aaf56b7663af02ff5dc2969238150466806e7f1 Thu Apr 20 10:28:30 2017 -0700
    First cut at utility to rename submit file names in database.
• src/hg/cirm/cdw/cdwSubmit/cdwSubmit.c
  • lines changed 4, context: html, text, full: html, text
    b58b7c97c25b181a7cbb87e2fcdb1aeb1ddb0c35 Wed Apr 19 14:54:45 2017 -0700
    Removing some tag validation since it is now done by tagStormCheck.
• src/hg/cirm/cdw/inc/cdwValid.h
  • lines changed 9, context: html, text, full: html, text
    b58b7c97c25b181a7cbb87e2fcdb1aeb1ddb0c35 Wed Apr 19 14:54:45 2017 -0700
    Removing some tag validation since it is now done by tagStormCheck.
• src/hg/cirm/cdw/makefile
  • lines changed 1, context: html, text, full: html, text
    28467158fc3d76ac022d5aee3073a74a1bb74249 Thu Apr 20 11:35:01 2017 -0700
    Adding cdwRenameFiles to make chain
  • lines changed 1, context: html, text, full: html, text
    c7a2bf8be3b9d034ea579c9860ac2a774f05ead8 Thu Apr 20 17:39:14 2017 -0700
    Polishign up cdwRenameDataset.
• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 1, context: html, text, full: html, text
    bf2c869e642b5be1ad6f3542d078f155fc4d81f2 Wed Apr 19 14:08:42 2017 -0700
    Removing typo of extraneous . from hubConnect redirect page, no refs
• src/hg/hgTables/schema.c
  • lines changed 1, context: html, text, full: html, text
    c011a3d3199ad3e0380be4107d469ba5e15fd20c Mon Apr 17 15:02:15 2017 -0700
    Make 'describe table schema' button work on table browser. This makes it work for all of the big* types. refs #18736
• src/hg/hgTracks/barChartTrack.c
  • lines changed 20, context: html, text, full: html, text
    b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
    Cleanup FIXME and TODO comments. refs #18736
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    db2634b37c0d5d01df1992f126eceec5ee2fd6af Wed Apr 19 08:24:21 2017 -0700
    Fix map box problem causing some clicks to misfire. refs #18736
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    2b41f66277f1191800c203f0dbda57f1c2bbdd30 Wed Apr 19 10:00:28 2017 -0700
    Add support for maxLimit trackDb setting. refs #18736
• src/hg/hgTracks/hgTracks.c
  • lines changed 3, context: html, text, full: html, text
    b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
    Cleanup FIXME and TODO comments. refs #18736
  • lines changed 2, context: html, text, full: html, text
    ff93392157d51c1595a498f1ea72d881a9386468 Wed Apr 19 19:28:50 2017 -0700
    Yet another place to add big* track. Fixes problem with hgTracks object missing when full mode set. Thanks Chris L. refs #18736
• src/hg/hgTracks/simpleTracks.c
  • lines changed 1, context: html, text, full: html, text
    b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
    Cleanup FIXME and TODO comments. refs #18736
• src/hg/hgc/barChartClick.c
  • lines changed 9, context: html, text, full: html, text
    b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
    Cleanup FIXME and TODO comments. refs #18736
• src/hg/hgc/hgcData/barChartBoxplot.R
  • lines changed 4, context: html, text, full: html, text
    cc629ae1ea3d781cb47fc0b78bd382842fd30789 Thu Apr 20 16:01:52 2017 -0700
    Make N= visible on boxplot. refs #18736
• src/hg/htdocs/ENCODE/releaseLog.html
  • lines changed 1, context: html, text, full: html, text
    942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
    Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
• src/hg/htdocs/FAQ/FAQblat.html
  • lines changed 1, context: html, text, full: html, text
    942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
    Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
• src/hg/htdocs/FAQ/FAQlicense.html
  • lines changed 2, context: html, text, full: html, text
    942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
    Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
• src/hg/htdocs/FAQ/FAQreleases.html
  • lines changed 1, context: html, text, full: html, text
    6e441884660482307233743dfa8bc230180beaf9 Mon Apr 17 14:33:30 2017 -0700
    Adding Tibetan frog to the FAQreleases.html page, refs #15056
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    38789b8c6a08696ea0401acae15e48ce3c3229bc Fri Apr 21 17:18:55 2017 -0700
    Editing static docs for manPen1 release refs #15515
• src/hg/htdocs/admin/mirror.html
  • lines changed 274, context: html, text, full: html, text
    942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
    Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
• src/hg/htdocs/admin/mirrorManual.html
  • lines changed 1881, context: html, text, full: html, text
    942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
    Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
• src/hg/htdocs/contacts.html
  • lines changed 1, context: html, text, full: html, text
    942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
    Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
• src/hg/htdocs/goldenPath/credits.html
  • lines changed 55, context: html, text, full: html, text
    23d7cc63ddd1a6da1e9ac7575b2babd6e705964b Mon Apr 17 13:06:34 2017 -0700
    Adding credits for nanPar1, refs #15056
  • lines changed 37, context: html, text, full: html, text
    4c6c4cd2c29ecb34a7b70560314a6792bd02baa5 Mon Apr 17 13:51:28 2017 -0700
    added bison to credits page per refs #15388
  • lines changed 0, context: html, text, full: html, text
    e0caf7a12be656b3711bf36c769001c8090faa70 Mon Apr 17 14:03:37 2017 -0700
    added bison to credtis.html per refs #15388
  • lines changed 40, context: html, text, full: html, text
    38789b8c6a08696ea0401acae15e48ce3c3229bc Fri Apr 21 17:18:55 2017 -0700
    Editing static docs for manPen1 release refs #15515
• src/hg/htdocs/goldenPath/help/gbic.html
  • lines changed 1, context: html, text, full: html, text
    942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
    Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
• src/hg/htdocs/goldenPath/help/hgTablesHelp.html
  • lines changed 1, context: html, text, full: html, text
    942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
    Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
  • lines changed 1, context: html, text, full: html, text
    910d5b98de9ab3ade4a2752203511101af2cde8d Wed Apr 19 07:44:06 2017 -0700
    Fixing typo as per mlq refs #19269
• src/hg/htdocs/goldenPath/help/mirror.html
  • lines changed 275, context: html, text, full: html, text
    f4c39d45286a52ea8cd5818ce0c04e0c02abc883 Mon Apr 17 14:14:18 2017 -0700
    Moving htdocs/admin/mirror.html and htdocs/admin/mirrorManual.html to new locations in goldenPath/help. Leaving original docs in place for now, will update with an http redirect to the new files once all static docs referencing the mirror docs have been updated to point to the new location, refs #19130
  • lines changed 1, context: html, text, full: html, text
    942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
    Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
• src/hg/htdocs/goldenPath/help/mirrorManual.html
  • lines changed 1882, context: html, text, full: html, text
    f4c39d45286a52ea8cd5818ce0c04e0c02abc883 Mon Apr 17 14:14:18 2017 -0700
    Moving htdocs/admin/mirror.html and htdocs/admin/mirrorManual.html to new locations in goldenPath/help. Leaving original docs in place for now, will update with an http redirect to the new files once all static docs referencing the mirror docs have been updated to point to the new location, refs #19130
  • lines changed 1, context: html, text, full: html, text
    942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
    Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html
  • lines changed 9, context: html, text, full: html, text
    367330f0cfa964222ed079084d2e65f7d8f3d709 Fri Apr 21 15:58:01 2017 -0700
    Adding links to track hub mailing list ong the trackDbHub.html page.
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 19, context: html, text, full: html, text
    4a86abdeb363b7035c30d03bf12fbf08d3b6401c Mon Apr 17 14:09:34 2017 -0700
    Adding nanPar1 to the news archives, refs #15056
  • lines changed 17, context: html, text, full: html, text
    7888dcaea19c84e0f44bc49ecc569ab8dc1d5d05 Thu Apr 20 08:22:40 2017 -0700
    added bison to news arch per refs #15388
  • lines changed 3, context: html, text, full: html, text
    bbfc011bfe8bd7e2455e78719ceb1cb390c78a91 Thu Apr 20 09:17:18 2017 -0700
    corrected link for bison per refs #15388
  • lines changed 3, context: html, text, full: html, text
    a243b4b63295f39fc24d9025db3d50a7a23930e8 Thu Apr 20 10:27:43 2017 -0700
    Adding announcement for nanPar1 and bisBis1, refs #15056
  • lines changed 1, context: html, text, full: html, text
    7c627565d4e541ee7968ea385611379f1f2b0a30 Fri Apr 21 09:47:12 2017 -0700
    fixing broken link on HGVS Oct.17, 2016 entry no redmine
  • lines changed 20, context: html, text, full: html, text
    38789b8c6a08696ea0401acae15e48ce3c3229bc Fri Apr 21 17:18:55 2017 -0700
    Editing static docs for manPen1 release refs #15515
  • lines changed 1, context: html, text, full: html, text
    d2fd73a56a12873b1f7f52a83169de9fa57791bf Mon Apr 24 10:09:15 2017 -0700
    Fixing url to correct anchor for manPen1 use conditions, refs #15515
• src/hg/htdocs/goldenPath/releaseLogOld.html
  • lines changed 1, context: html, text, full: html, text
    942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
    Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
• src/hg/htdocs/images/phylo/galVar1.4way.png
  • lines changed 0, context: html, text, full: html, text
    84b4480b58ebaa582a06f4111e18dc5251cdcbd3 Thu Apr 20 11:31:34 2017 -0700
    4-way alignment on galVar1 for Juergen Schmotz no redmine
  • lines changed 0, context: html, text, full: html, text
    b056b2cca67fa4e8a5943a90fea6061c3b2ed380 Thu Apr 20 14:11:48 2017 -0700
    4-way alignment for Juergen Schmitz no redmine
• src/hg/htdocs/images/phylo/galVar1_4way.png
  • lines changed 0, context: html, text, full: html, text
    b056b2cca67fa4e8a5943a90fea6061c3b2ed380 Thu Apr 20 14:11:48 2017 -0700
    4-way alignment for Juergen Schmitz no redmine
• src/hg/htdocs/images/phylo/hg38_4way.png
  • lines changed 0, context: html, text, full: html, text
    b056b2cca67fa4e8a5943a90fea6061c3b2ed380 Thu Apr 20 14:11:48 2017 -0700
    4-way alignment for Juergen Schmitz no redmine
• src/hg/htdocs/images/phylo/mm10_4way.png
  • lines changed 0, context: html, text, full: html, text
    1b6ada65366179f9b4feeaa10963f51f8476c429 Thu Apr 20 14:48:13 2017 -0700
    4-way alignment for Juergen Schmitz no redmin
• src/hg/htdocs/inc/globalNavBar.inc
  • lines changed 1, context: html, text, full: html, text
    942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
    Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
• src/hg/htdocs/indexNews.html
  • lines changed 6, context: html, text, full: html, text
    a243b4b63295f39fc24d9025db3d50a7a23930e8 Thu Apr 20 10:27:43 2017 -0700
    Adding announcement for nanPar1 and bisBis1, refs #15056
  • lines changed 13, context: html, text, full: html, text
    38789b8c6a08696ea0401acae15e48ce3c3229bc Fri Apr 21 17:18:55 2017 -0700
    Editing static docs for manPen1 release refs #15515
• src/hg/htdocs/mirror.html
  • lines changed 1, context: html, text, full: html, text
    942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
    Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
• src/hg/inc/barChartUi.h
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    cc79031e1090e9e121f7d94f0c6f909f5e77ac3c Wed Apr 19 08:39:04 2017 -0700
    Tweak default view limit max for better display on current test tracks (gene expression). refs #18736
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    2b41f66277f1191800c203f0dbda57f1c2bbdd30 Wed Apr 19 10:00:28 2017 -0700
    Add support for maxLimit trackDb setting. refs #18736
• src/hg/inc/versionInfo.h
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    4558738b4fb6ac1522a042b40509772845825f99 Mon Apr 24 10:35:34 2017 -0700
    New version number v348
• src/hg/js/barChart.js
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    2fcabe1a7881fefe2f84adb2aa140ce916d883da Mon Apr 17 16:04:16 2017 -0700
    Fix event handling on checkbox. refs #18736
• src/hg/js/hgTracks.js
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    7f3920b6ce8c28674b85c53c6541e497d68a9b18 Mon Apr 17 18:40:44 2017 -0700
    Fix right-click menu. refs #18736
• src/hg/js/makefile
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    088062c48a74ef814d3a737bcd967e8ebec502a4 Mon Apr 17 18:39:18 2017 -0700
    Fix checkbox on UI. refs *18736
• src/hg/js/utils.js
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    2fcabe1a7881fefe2f84adb2aa140ce916d883da Mon Apr 17 16:04:16 2017 -0700
    Fix event handling on checkbox. refs #18736
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    2b41f66277f1191800c203f0dbda57f1c2bbdd30 Wed Apr 19 10:00:28 2017 -0700
    Add support for maxLimit trackDb setting. refs #18736
• src/hg/lib/barChartCategory.c
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    b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
    Cleanup FIXME and TODO comments. refs #18736
• src/hg/lib/barChartUi.c
  • lines changed 14, context: html, text, full: html, text
    2fcabe1a7881fefe2f84adb2aa140ce916d883da Mon Apr 17 16:04:16 2017 -0700
    Fix event handling on checkbox. refs #18736
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    b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
    Cleanup FIXME and TODO comments. refs #18736
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    2b41f66277f1191800c203f0dbda57f1c2bbdd30 Wed Apr 19 10:00:28 2017 -0700
    Add support for maxLimit trackDb setting. refs #18736
• src/hg/lib/customFactory.c
  • lines changed 3, context: html, text, full: html, text
    b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
    Cleanup FIXME and TODO comments. refs #18736
• src/hg/lib/trackDbCustom.c
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    b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
    Cleanup FIXME and TODO comments. refs #18736
• src/hg/lib/trackHub.c
  • lines changed 1, context: html, text, full: html, text
    b5a43eda6548e6d32d9fa32abd96848decd53472 Wed Apr 19 07:43:10 2017 -0700
    Cleanup FIXME and TODO comments. refs #18736
• src/hg/makeDb/doc/criGri1.txt
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    23728dc5266886aa0cb32bf22b1738cb1d2ea220 Wed Apr 19 11:42:27 2017 -0700
    add liftOvers between criGri1 and criGriChoV1 refs #19228
• src/hg/makeDb/doc/criGriChoV1/initialBuild.txt
  • lines changed 66, context: html, text, full: html, text
    f6927d332aef2c506c4ee88c47f3884754813bd8 Wed Apr 19 10:46:51 2017 -0700
    loading genbank run and liftOver to criGri1 refs #19228
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    23728dc5266886aa0cb32bf22b1738cb1d2ea220 Wed Apr 19 11:42:27 2017 -0700
    add liftOvers between criGri1 and criGriChoV1 refs #19228
• src/hg/makeDb/doc/galVar1/multiz4way.txt
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    5fa39cc02a7c82ba345708b439913698647bcd46 Fri Apr 21 22:53:23 2017 -0700
    adding 4-way alignment with tupChi1 for Juergen Schmitz no redmine
• src/hg/makeDb/doc/hg19.txt
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
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• src/hg/makeDb/doc/hg38/hg38.txt
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
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    e3d377d9bad0ac103c113d7be88f994938852334 Wed Apr 19 10:26:03 2017 -0700
    lastz chainNet to criGriChoV1 refs #19228
• src/hg/makeDb/doc/hg38/multiz4way.txt
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    9fdca34a204e7c3151bf55ccf05b8f2b06095a0c Fri Apr 21 16:46:49 2017 -0700
    4-way with tupChi1 for Juergen Schmitz no redmine
• src/hg/makeDb/doc/mm10.txt
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
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    314097b00bbc24f15f594c0154215bf0d10c0972 Tue Apr 18 12:08:11 2017 -0700
    lastz chainNet refs #19228
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    fa50cd18cfd29029efd24065994ea588cb529612 Fri Apr 21 21:34:36 2017 -0700
    adding 4-way alignment with tupChi1 for Juergen Schmitz no redmine
• src/hg/makeDb/doc/mouseStrains/GCA_001624185.1_129S1_SvImJ_v1/GCA_001624185.1_129S1_SvImJ_v1.trackDb.txt
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
    catching up trackDb to add gapOverlap track refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001624185.1_129S1_SvImJ_v1/html/GCA_001624185.1_129S1_SvImJ_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001624215.1_A_J_v1/GCA_001624215.1_A_J_v1.trackDb.txt
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
    catching up trackDb to add gapOverlap track refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001624215.1_A_J_v1/html/GCA_001624215.1_A_J_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001624295.1_AKR_J_v1/GCA_001624295.1_AKR_J_v1.trackDb.txt
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
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• src/hg/makeDb/doc/mouseStrains/GCA_001624295.1_AKR_J_v1/html/GCA_001624295.1_AKR_J_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001624445.1_CAST_EiJ_v1/GCA_001624445.1_CAST_EiJ_v1.trackDb.txt
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
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• src/hg/makeDb/doc/mouseStrains/GCA_001624445.1_CAST_EiJ_v1/html/GCA_001624445.1_CAST_EiJ_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001624475.1_CBA_J_v1/GCA_001624475.1_CBA_J_v1.trackDb.txt
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
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• src/hg/makeDb/doc/mouseStrains/GCA_001624475.1_CBA_J_v1/html/GCA_001624475.1_CBA_J_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001624505.1_DBA_2J_v1/GCA_001624505.1_DBA_2J_v1.trackDb.txt
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
    catching up trackDb to add gapOverlap track refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001624505.1_DBA_2J_v1/html/GCA_001624505.1_DBA_2J_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
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• src/hg/makeDb/doc/mouseStrains/GCA_001624535.1_FVB_NJ_v1/html/GCA_001624535.1_FVB_NJ_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001624675.1_NOD_ShiLtJ_v1/GCA_001624675.1_NOD_ShiLtJ_v1.trackDb.txt
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
    catching up trackDb to add gapOverlap track refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001624675.1_NOD_ShiLtJ_v1/html/GCA_001624675.1_NOD_ShiLtJ_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001624745.1_NZO_HlLtJ_v1/GCA_001624745.1_NZO_HlLtJ_v1.trackDb.txt
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
    catching up trackDb to add gapOverlap track refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001624745.1_NZO_HlLtJ_v1/html/GCA_001624745.1_NZO_HlLtJ_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001624775.1_PWK_PhJ_v1/GCA_001624775.1_PWK_PhJ_v1.trackDb.txt
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
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• src/hg/makeDb/doc/mouseStrains/GCA_001624775.1_PWK_PhJ_v1/html/GCA_001624775.1_PWK_PhJ_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001624835.1_WSB_EiJ_v1/GCA_001624835.1_WSB_EiJ_v1.trackDb.txt
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
    catching up trackDb to add gapOverlap track refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001624835.1_WSB_EiJ_v1/html/GCA_001624835.1_WSB_EiJ_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001624865.1_SPRET_EiJ_v1/GCA_001624865.1_SPRET_EiJ_v1.trackDb.txt
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
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• src/hg/makeDb/doc/mouseStrains/GCA_001624865.1_SPRET_EiJ_v1/html/GCA_001624865.1_SPRET_EiJ_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
    catching up trackDb to add gapOverlap track refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001632525.1_BALB_cJ_v1/html/GCA_001632525.1_BALB_cJ_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001632555.1_C57BL_6NJ_v1/GCA_001632555.1_C57BL_6NJ_v1.trackDb.txt
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
    catching up trackDb to add gapOverlap track refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001632555.1_C57BL_6NJ_v1/html/GCA_001632555.1_C57BL_6NJ_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001632575.1_C3H_HeJ_v1/GCA_001632575.1_C3H_HeJ_v1.trackDb.txt
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
    catching up trackDb to add gapOverlap track refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001632575.1_C3H_HeJ_v1/html/GCA_001632575.1_C3H_HeJ_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001632615.1_LP_J_v1/GCA_001632615.1_LP_J_v1.trackDb.txt
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
    catching up trackDb to add gapOverlap track refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_001632615.1_LP_J_v1/html/GCA_001632615.1_LP_J_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/GCA_900094665.1_CAROLI_EIJ_v1.trackDb.txt
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
    catching up trackDb to add gapOverlap track refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.allGaps.html
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    38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
    catching up Mus caroli assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.assembly.html
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    38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
    catching up Mus caroli assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.augustus.html
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    38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
    catching up Mus caroli assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.build.stats.txt
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    38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
    catching up Mus caroli assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.cpgIslands.html
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    38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
    catching up Mus caroli assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.description.html
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    38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
    catching up Mus caroli assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.gap.html
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    38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
    catching up Mus caroli assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.gc5Base.html
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    38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
    catching up Mus caroli assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.names.tab
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    38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
    catching up Mus caroli assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.repeatMasker.html
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    38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
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• src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.simpleRepeat.html
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    38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
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• src/hg/makeDb/doc/mouseStrains/GCA_900094665.1_CAROLI_EIJ_v1/html/GCA_900094665.1_CAROLI_EIJ_v1.windowMasker.html
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    38860c459386ca6ce8c7f28185c173d9416578d9 Wed Apr 19 15:03:07 2017 -0700
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• src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/GCA_001624865.1_SPRET_EiJ_v1.trackDb.txt
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    ccd6e5c59b8e649a2a599ffb20c42b505816d424 Wed Apr 19 15:04:45 2017 -0700
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    50827e9e55e77dec673bf470d9be76be34137c00 Wed Apr 19 15:10:26 2017 -0700
    correct trackDb for pahari refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/GCA_900095145.1_PAHARI_EIJ_v1.trackDb.txt
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    50827e9e55e77dec673bf470d9be76be34137c00 Wed Apr 19 15:10:26 2017 -0700
    correct trackDb for pahari refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.allGaps.html
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    c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
    catching up Mus pahari assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.assembly.html
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    c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
    catching up Mus pahari assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.augustus.html
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    c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
    catching up Mus pahari assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.cpgIslands.html
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    c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
    catching up Mus pahari assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.description.html
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    c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
    catching up Mus pahari assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.gap.html
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    c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
    catching up Mus pahari assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.gapOverlap.html
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    e0ab9fcd4c7cca38b22e3a43a918b27d2b3c7585 Wed Apr 19 16:13:25 2017 -0700
    adding gapOverlap.html refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.gc5Base.html
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    c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
    catching up Mus pahari assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.names.tab
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    c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
    catching up Mus pahari assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.repeatMasker.html
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    c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
    catching up Mus pahari assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.simpleRepeat.html
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    c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
    catching up Mus pahari assembly refs #13553
• src/hg/makeDb/doc/mouseStrains/GCA_900095145.1_PAHARI_EIJ_v1/html/GCA_900095145.1_PAHARI_EIJ_v1.windowMasker.html
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    c24f15c92ce6b6562d2f77d14be171e5547ccb24 Wed Apr 19 15:03:52 2017 -0700
    catching up Mus pahari assembly refs #13553
• src/hg/makeDb/genbank/etc/align.dbs
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    ad5c9b269dfadd165133d9cc6f702d77b9dd0aa5 Wed Apr 19 10:52:44 2017 -0700
    adding criGriChoV1 to the update alignments refs #19228
• src/hg/makeDb/genbank/etc/hgwbeta.dbs
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    ffbaa24f43f2e53c9da23f80dd99ecd5f8b3a025 Wed Apr 19 16:47:56 2017 -0700
    Adding manPen1, refs #15515
• src/hg/makeDb/genbank/etc/hgwdev.dbs
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    ad5c9b269dfadd165133d9cc6f702d77b9dd0aa5 Wed Apr 19 10:52:44 2017 -0700
    adding criGriChoV1 to the update alignments refs #19228
• src/hg/makeDb/genbank/etc/rr.dbs
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    c14a200a3654d5a862c7f679b6af7ce141bc0a1d Fri Apr 14 11:17:06 2017 -0700
    Turning on Genbank updates for nanPar1, refs #15056
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    3e0cebe88f96612c739b4a4ed842418363314620 Thu Apr 20 17:28:27 2017 -0700
    Enabling rr Genbank updates for manPen1, refs #15515
• src/hg/makeDb/outside/gencode/gencodeGenerateTrackDbs
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/outside/gencode/gencodeLoad.mk
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/schema/all.joiner
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
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    261cc77bd958e5910320428eabb7e1cc265053e2 Wed Apr 19 10:44:26 2017 -0700
    adding criGriChoV1 rules refs #19228
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    f1d187773d2ca5413ef0fef31f8c7fa1edd1ff07 Thu Apr 20 16:37:50 2017 -0700
    Fixing some ancient all.joiner problems for rn4 rules, refs #7095
• src/hg/makeDb/trackDb/contigOverlaps.html
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    c1a6825d1818e050b30ffa0bf91a9abed26b613d Thu Apr 20 12:17:31 2017 -0700
    remove out of date file refs #19247
• src/hg/makeDb/trackDb/galVar/galVar1/cons4way.html
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    3af0d99192a1e3c83c102f023c4e0c9a9e9c66f5 Fri Apr 21 17:33:00 2017 -0700
    adding 4-way with tupChi1 in place of tupBel1 for Juergen Schmitz no redmine
• src/hg/makeDb/trackDb/galVar/galVar1/trackDb.4way.ra
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    3af0d99192a1e3c83c102f023c4e0c9a9e9c66f5 Fri Apr 21 17:33:00 2017 -0700
    adding 4-way with tupChi1 in place of tupBel1 for Juergen Schmitz no redmine
• src/hg/makeDb/trackDb/galVar/galVar1/trackDb.5way.ra
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    3af0d99192a1e3c83c102f023c4e0c9a9e9c66f5 Fri Apr 21 17:33:00 2017 -0700
    adding 4-way with tupChi1 in place of tupBel1 for Juergen Schmitz no redmine
• src/hg/makeDb/trackDb/galVar/galVar1/trackDb.ra
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    3af0d99192a1e3c83c102f023c4e0c9a9e9c66f5 Fri Apr 21 17:33:00 2017 -0700
    adding 4-way with tupChi1 in place of tupBel1 for Juergen Schmitz no redmine
• src/hg/makeDb/trackDb/gapOverlap.html
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    7a5b72bdf0df6ce3c51506b9f591ae694393754e Wed Apr 19 14:41:05 2017 -0700
    updated contigOverlap.html and renamed refs #19228
• src/hg/makeDb/trackDb/human/chainNetPlacental.ra
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    9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
    Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
• src/hg/makeDb/trackDb/human/chainNetPrimate.ra
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    9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
    Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
• src/hg/makeDb/trackDb/human/chainNetVertebrate.ra
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    9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
    Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
• src/hg/makeDb/trackDb/human/hg16/trackDb.chainNet.ra
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    cdb03338822955b3ad42895e520ca65ca25c7c61 Tue Apr 18 09:49:27 2017 -0700
    Sorting the Comparative Genomics group by alphabetical order for hg16, refs #19187
• src/hg/makeDb/trackDb/human/hg16/trackDb.ra
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    cdb03338822955b3ad42895e520ca65ca25c7c61 Tue Apr 18 09:49:27 2017 -0700
    Sorting the Comparative Genomics group by alphabetical order for hg16, refs #19187
• src/hg/makeDb/trackDb/human/hg17/trackDb.chainNet.ra
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    7e312d64ba560416d70c46187ed9961250fed8ad Wed Apr 19 08:00:10 2017 -0700
    Re-ordering the Comparative Genomics Group for hg17, refs #19187
• src/hg/makeDb/trackDb/human/hg17/trackDb.ra
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    7e312d64ba560416d70c46187ed9961250fed8ad Wed Apr 19 08:00:10 2017 -0700
    Re-ordering the Comparative Genomics Group for hg17, refs #19187
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    80a95b1ac8ae7e4bd30c032c7cfb379f762ba580 Wed Apr 19 09:36:06 2017 -0700
    Sorting the Variation and Repeats group by alphabetical order for hg17, refs #19187
• src/hg/makeDb/trackDb/human/hg18/trackDb.chainNet.ra
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    e708e8912e9a8b059c154c438eab97a44c9ef141 Wed Apr 19 11:45:11 2017 -0700
    Sorting the Comparative Genomics group by alphabetical order for hg18, refs #19187
• src/hg/makeDb/trackDb/human/hg18/trackDb.encode.ra
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    059a3cfb4a435c6c40e4283d65f3bd30026e186c Thu Apr 20 13:57:53 2017 -0700
    Sorting the Pilot ENCODE Chromatin Immunoprecipitation by alphabetical order for hg18, refs #19187
• src/hg/makeDb/trackDb/human/hg18/trackDb.encodeChip.ra
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    059a3cfb4a435c6c40e4283d65f3bd30026e186c Thu Apr 20 13:57:53 2017 -0700
    Sorting the Pilot ENCODE Chromatin Immunoprecipitation by alphabetical order for hg18, refs #19187
• src/hg/makeDb/trackDb/human/hg18/trackDb.encodeChrom.ra
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    c33c61634df7c9a622e29af3913d260fa41abe65 Wed Apr 19 13:45:58 2017 -0700
    Sorting the Pilot ENCODE Chromatin Structure group for hg18, refs #19187
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
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    e708e8912e9a8b059c154c438eab97a44c9ef141 Wed Apr 19 11:45:11 2017 -0700
    Sorting the Comparative Genomics group by alphabetical order for hg18, refs #19187
• src/hg/makeDb/trackDb/human/hg19/defaultPriority.ra
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    9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
    Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
• src/hg/makeDb/trackDb/human/hg19/trackDb.chainNet.ra
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    9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
    Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
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    9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
    Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra
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    9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
    Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.ra
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    9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
    Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV26lift37.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV26lift37.ra
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisDnaPet.ra
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    9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
    Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.release2.ra
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    9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
    Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.release2.ra
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    9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
    Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release4.ra
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    9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
    Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSuper.release2.ra
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    9b7461119eb0fd1515451b7ca90cfb5f28f84fdb Fri Apr 21 08:53:20 2017 -0700
    Sorting the mRNA and EST, Expression, Comparative Genomics, and Variation groups for hg19, refs #19187
• src/hg/makeDb/trackDb/human/hg38/cons4way.html
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    0fe12971325f08fdf4960957f37ec035b4b577bc Fri Apr 21 17:52:51 2017 -0700
    adding 4-way alignment with tupChi1 for Juergen Schmitz no redmine
• src/hg/makeDb/trackDb/human/hg38/defaultPriority.ra
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    952a1b3e985892d30a207eb98ae66ae62d7c1896 Fri Apr 21 15:13:21 2017 -0700
    Sorting the Mapping and Sequencing group for hg38, refs 19187
• src/hg/makeDb/trackDb/human/hg38/trackDb.20way.ra
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    5f0c14d2c4f2f601d0f177e0158d09ca1b1ddeca Fri Apr 21 15:47:13 2017 -0700
    Sorting the track by alphabetical order in the Comparative Genomics group for hg38, refs 19187
• src/hg/makeDb/trackDb/human/hg38/trackDb.4way.ra
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    0fe12971325f08fdf4960957f37ec035b4b577bc Fri Apr 21 17:52:51 2017 -0700
    adding 4-way alignment with tupChi1 for Juergen Schmitz no redmine
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    04df245028c6186c7807ddf4bc3253af2b449608 Fri Apr 21 09:30:06 2017 -0700
    Cleanup of barchart test track stanzas. More to come. refs #18736
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    952a1b3e985892d30a207eb98ae66ae62d7c1896 Fri Apr 21 15:13:21 2017 -0700
    Sorting the Mapping and Sequencing group for hg38, refs 19187
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    5f0c14d2c4f2f601d0f177e0158d09ca1b1ddeca Fri Apr 21 15:47:13 2017 -0700
    Sorting the track by alphabetical order in the Comparative Genomics group for hg38, refs 19187
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    0b5cd8c691ed013941e6ad36168500e21154a42d Fri Apr 21 16:16:29 2017 -0700
    Sorting the Variation group by alphabetical order and the newest version first for the SNP tracks, refs #19187
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    af650f2c17579e5ccb6e48470b466eb52298ecf7 Fri Apr 21 16:46:45 2017 -0700
    Sorting the Repeats group by alphabetical order for hg38, refs #19187
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    0fe12971325f08fdf4960957f37ec035b4b577bc Fri Apr 21 17:52:51 2017 -0700
    adding 4-way alignment with tupChi1 for Juergen Schmitz no redmine
• src/hg/makeDb/trackDb/human/hg38/trackDb.wgEncode.ra
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeSuper.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV19.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV20.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV21.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV22.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV23.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV24.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV25.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV26.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV26.ra
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/mouse/mm10/cons4way.html
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    51fa7206d8387f05056d52344637438aff75e357 Fri Apr 21 21:37:20 2017 -0700
    adding mm10 4-way alignment with tupChi1 for Juergen Schmitz no redmine
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.4way.ra
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    51fa7206d8387f05056d52344637438aff75e357 Fri Apr 21 21:37:20 2017 -0700
    adding mm10 4-way alignment with tupChi1 for Juergen Schmitz no redmine
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    1df4bd81ec254ef18855c4f0854072cb04d22c9f Fri Apr 21 23:26:02 2017 -0700
    correct name on phyloP track no redmine
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
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    51fa7206d8387f05056d52344637438aff75e357 Fri Apr 21 21:37:20 2017 -0700
    adding mm10 4-way alignment with tupChi1 for Juergen Schmitz no redmine
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeCredits1.shared.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeDisplay1.shared.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeSuper.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM10.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM11.html
  • lines changed 319, context: html, text, full: html, text
    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM12.html
  • lines changed 319, context: html, text, full: html, text
    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM13.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM13.ra
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM2.html
  • lines changed 283, context: html, text, full: html, text
    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM3.html
  • lines changed 283, context: html, text, full: html, text
    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM4.html
  • lines changed 283, context: html, text, full: html, text
    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM7.html
  • lines changed 319, context: html, text, full: html, text
    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM8.html
  • lines changed 319, context: html, text, full: html, text
    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM9.html
  • lines changed 319, context: html, text, full: html, text
    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/pangolin/manPen1/trackDb.ra
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    c6c461d939bd6a85d0f5bd6dc152eadd5be70248 Fri Apr 21 14:49:13 2017 -0700
    Turning on augustusGene by default for manPen1, refs #15515
• src/hg/makeDb/trackDb/tagTypes.tab
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    cdddc58560530eb5a7a2e3deb0cad4fd567a2853 Thu Apr 20 17:00:30 2017 -0700
    Add remainder of barChart settings. refs #18736
• src/hg/makeDb/trackDb/trackDb.transMap.ra
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    ab84b155b2310d1141ddac774115cd6af47b74ae Tue Apr 18 13:04:22 2017 -0700
    Changing long/shortLabels to be in line wiht our guidelines, #18818
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    fc21e24fb39d1611f5d365b316a6e65a56820d64 Wed Apr 19 08:11:42 2017 -0700
    Adding beta release tag to transMap V4 tracks, refs #18818
• src/hg/makeDb/trackDb/wgEncodeGencodeCredits1.shared.html
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    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/makeDb/trackDb/wgEncodeGencodeDisplay1.shared.html
  • lines changed 238, context: html, text, full: html, text
    2959bf6eacdf33882aa0572f4f013f69bf697437 Mon Apr 17 15:03:21 2017 -0700
    import of GENCODE V24, V24lift37, and VM13, with work to make maintaining the GENCODE tracks easier
• src/hg/oneShot/freen/freen.c
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    0c9a3906522dcea7de19a168ab66a485a0e92259 Wed Mar 22 14:17:28 2017 -0700
    Testing out some new code for identifying SQL reserved words.
• src/hg/utils/automation/HgAutomate.pm
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    69dfe94a49d2985183f5a63148b03fb626e940c1 Tue Apr 18 12:09:36 2017 -0700
    add databaseExists and constructing bigBed gapOverlap result refs #19338
• src/hg/utils/automation/doDbSnp.pl
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    ecf978829e5139141d15767aaafcccdd76b0ec1d Mon Apr 17 14:39:31 2017 -0700
    Oops, in 42fd1b9f I removed *.tab from the final workDir gzip command after moving out snpNNNSeq.tab into a separate step, but there is still snpNNNExceptionDesc.tab that the load step expects to find gzipped. refs #18330
• src/hg/utils/automation/doGapOverlap.pl
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    32522a28f00d0358694a9faad29efb63bf8374d7 Fri Apr 14 15:06:19 2017 -0700
    correctly avoid running on empty results refs #19338
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    69dfe94a49d2985183f5a63148b03fb626e940c1 Tue Apr 18 12:09:36 2017 -0700
    add databaseExists and constructing bigBed gapOverlap result refs #19338
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    ea9e468626d6e477199416b03cf880e3fd57ddaf Wed Apr 19 22:52:28 2017 -0700
    do not load empty files refs #19228
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    08071178d0f2a2be1ef71bdfe627c1afad60444b Thu Apr 20 12:16:43 2017 -0700
    remove template comment block refs #19247
• src/hg/utils/makefile
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    eed6b3f36a8c1f8095592f35abe979f82656b2ed Thu Apr 20 10:32:35 2017 -0700
    Adding vai.pl to SCRIPTS and to a new var, USER_APP_SCRIPTS, and new target %.userAppScript that installs the script in ${DESTDIR}${BINDIR} so userApps does not require the scripts directory to be added to user's PATH, per discussion with Hiram. refs #12216
• src/inc/fieldedTable.h
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    7aaf56b7663af02ff5dc2969238150466806e7f1 Thu Apr 20 10:28:30 2017 -0700
    First cut at utility to rename submit file names in database.
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    992a12b087b6cef00ad0f699d613f2abc538018b Thu Apr 20 17:46:28 2017 -0700
    Moving some little new useful routines to library.
• src/inc/gitSha1.h
  • lines changed 73, context: html, text, full: html, text
    58f94bd4988cf7a97cf2dd4222e6cd62513a88ed Wed Apr 19 17:44:24 2017 -0700
    Adding free opensource fast SHA1 from git. This is primarily inteded for hashing to quickly checking if files are identical. It can run quickly on a block of RAM or on a file. You can get raw binary values or hex string.
  • lines changed 73, context: html, text, full: html, text
    fa5419167433c0bf67c95aea3bf10d248ca43657 Thu Apr 20 14:13:05 2017 -0700
    Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.
• src/inc/obscure.h
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    992a12b087b6cef00ad0f699d613f2abc538018b Thu Apr 20 17:46:28 2017 -0700
    Moving some little new useful routines to library.
• src/inc/sha1.h
  • lines changed 40, context: html, text, full: html, text
    fa5419167433c0bf67c95aea3bf10d248ca43657 Thu Apr 20 14:13:05 2017 -0700
    Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.
• src/inc/sqlReserved.h
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    6fb0e2245aeebcc8bf19d60bd2c68849d2c4110a Wed Mar 22 14:24:49 2017 -0700
    Making library for identifying sql reserved words.
• src/lib/fieldedTable.c
  • lines changed 6, context: html, text, full: html, text
    7aaf56b7663af02ff5dc2969238150466806e7f1 Thu Apr 20 10:28:30 2017 -0700
    First cut at utility to rename submit file names in database.
  • lines changed 33, context: html, text, full: html, text
    992a12b087b6cef00ad0f699d613f2abc538018b Thu Apr 20 17:46:28 2017 -0700
    Moving some little new useful routines to library.
• src/lib/gitSha1.c
  • lines changed 393, context: html, text, full: html, text
    58f94bd4988cf7a97cf2dd4222e6cd62513a88ed Wed Apr 19 17:44:24 2017 -0700
    Adding free opensource fast SHA1 from git. This is primarily inteded for hashing to quickly checking if files are identical. It can run quickly on a block of RAM or on a file. You can get raw binary values or hex string.
  • lines changed 393, context: html, text, full: html, text
    fa5419167433c0bf67c95aea3bf10d248ca43657 Thu Apr 20 14:13:05 2017 -0700
    Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.
• src/lib/makefile
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    6fb0e2245aeebcc8bf19d60bd2c68849d2c4110a Wed Mar 22 14:24:49 2017 -0700
    Making library for identifying sql reserved words.
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    58f94bd4988cf7a97cf2dd4222e6cd62513a88ed Wed Apr 19 17:44:24 2017 -0700
    Adding free opensource fast SHA1 from git. This is primarily inteded for hashing to quickly checking if files are identical. It can run quickly on a block of RAM or on a file. You can get raw binary values or hex string.
  • lines changed 2, context: html, text, full: html, text
    fa5419167433c0bf67c95aea3bf10d248ca43657 Thu Apr 20 14:13:05 2017 -0700
    Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.
• src/lib/mgPolygon.c
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    bf45b61deb8e09918d17d44459a087536ab95588 Wed Apr 19 14:56:50 2017 -0700
    Removing some unused flaky code.
• src/lib/net.c
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    5789a89fb3a1e8b8adabcb6447bcb190d010b0ad Fri Apr 21 11:40:20 2017 -0700
    Adding more specific range start and end to error message.
• src/lib/obscure.c
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    992a12b087b6cef00ad0f699d613f2abc538018b Thu Apr 20 17:46:28 2017 -0700
    Moving some little new useful routines to library.
• src/lib/sha1.c
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    fa5419167433c0bf67c95aea3bf10d248ca43657 Thu Apr 20 14:13:05 2017 -0700
    Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.
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    5148ded61163c9564fdffdf5d72e43208cc166b2 Sat Apr 22 03:00:54 2017 -0700
    Changed unnecessary and unavailable fread_unlocked to simply use fread instead.
• src/lib/sqlReserved.c
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    6fb0e2245aeebcc8bf19d60bd2c68849d2c4110a Wed Mar 22 14:24:49 2017 -0700
    Making library for identifying sql reserved words.
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    e6d742b5b92002178ee39008f33c9e28fb5fbabf Wed Mar 22 14:47:30 2017 -0700
    Adding copyright.
• src/lib/tagStorm.c
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    e6d742b5b92002178ee39008f33c9e28fb5fbabf Wed Mar 22 14:47:30 2017 -0700
    Adding copyright.
• src/lib/tagToSql.c
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    439a7a0ec19fcfc5140f58f7e630341ae13de5e9 Wed Mar 22 14:48:22 2017 -0700
    Checking for SQL reserved words and adding copyright.
• src/lib/tests/gitSha1Test.c
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    58f94bd4988cf7a97cf2dd4222e6cd62513a88ed Wed Apr 19 17:44:24 2017 -0700
    Adding free opensource fast SHA1 from git. This is primarily inteded for hashing to quickly checking if files are identical. It can run quickly on a block of RAM or on a file. You can get raw binary values or hex string.
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    cd666467bcf8b60156c95e0a333b1a84ace94e15 Thu Apr 20 14:02:32 2017 -0700
    little fixes
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    fa5419167433c0bf67c95aea3bf10d248ca43657 Thu Apr 20 14:13:05 2017 -0700
    Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.
• src/lib/tests/makefile
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    58f94bd4988cf7a97cf2dd4222e6cd62513a88ed Wed Apr 19 17:44:24 2017 -0700
    Adding free opensource fast SHA1 from git. This is primarily inteded for hashing to quickly checking if files are identical. It can run quickly on a block of RAM or on a file. You can get raw binary values or hex string.
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    fa5419167433c0bf67c95aea3bf10d248ca43657 Thu Apr 20 14:13:05 2017 -0700
    Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.
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    d803f7833e42fa7578a56a8352a478ff695a1e38 Fri Apr 21 09:41:26 2017 -0700
    oops missed one in makefile
• src/lib/tests/sha1Test.c
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    fa5419167433c0bf67c95aea3bf10d248ca43657 Thu Apr 20 14:13:05 2017 -0700
    Swapping out the Linus Torvalds version of sha1 from git with a free version not encumbered by license questions. It is smaller and even slightly faster. Maybe compilers have improved.
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    5148ded61163c9564fdffdf5d72e43208cc166b2 Sat Apr 22 03:00:54 2017 -0700
    Changed unnecessary and unavailable fread_unlocked to simply use fread instead.
• src/lib/udc.c
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    d1abfc7a22070300f05d476ae0fa66315094a311 Fri Apr 21 12:00:16 2017 -0700
    Adding double-check to udc. The url passed in should not have any byterange on it.
• src/product/installer/README.md
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    942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
    Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
• src/product/mirrorDocs/makefile
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    942e37b1e172b6392c4428d0045b5f3d60043c69 Mon Apr 17 15:39:29 2017 -0700
    Added a redirect to admin/mirror.html and admin/mirrorManual.html to point to their new locations in goldenPath/help. This should allow users who have bookmarked these pages to still be able to access them and for google to index the new pages so users can actually find them. Also updated all the links that pointed to admin/mirror.html to point to the new location, refs #19130
• src/tagStorm/python/tagStorm.py
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    9fefa84ea2dc572c235b15f3fba1454c5a83f7d0 Wed Apr 19 12:18:15 2017 -0700
    Adding python implementation of tagStorm libraries for the tagStorm manuscript, no redmine
• src/tagStorm/tagStormCheck/tagStormCheck.c
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    cfcae73921942ac31e61da15ef6f1dd9e1bdb479 Wed Mar 22 14:35:07 2017 -0700
    Making program by default also check that tags are not SQL reserved words.
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    79b2e04b9a9ce10987f89db0e12e0e79c75d87f1 Wed Apr 19 10:19:22 2017 -0700
    Adding a null value check.
• src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed
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    3e05ac599db2f7a03948d96f5e24de16095fa70c Fri Apr 21 14:34:25 2017 -0700
    Python script for converting an expression matrix into a barchart bed, refs #19155
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    cb480f172185464534e839cffc8cc04fb2888e77 Fri Apr 21 14:38:19 2017 -0700
    Updating the usage statement, refs #19155
• src/utils/expMatrixToBarchartBed/makefile
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    3e05ac599db2f7a03948d96f5e24de16095fa70c Fri Apr 21 14:34:25 2017 -0700
    Python script for converting an expression matrix into a barchart bed, refs #19155
• src/utils/expMatrixToBarchartBed/tests/makefile
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    3e05ac599db2f7a03948d96f5e24de16095fa70c Fri Apr 21 14:34:25 2017 -0700
    Python script for converting an expression matrix into a barchart bed, refs #19155
• src/utils/expMatrixToBarchartBed/tests/test.coords
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    3e05ac599db2f7a03948d96f5e24de16095fa70c Fri Apr 21 14:34:25 2017 -0700
    Python script for converting an expression matrix into a barchart bed, refs #19155
• src/utils/expMatrixToBarchartBed/tests/test.matrix
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    3e05ac599db2f7a03948d96f5e24de16095fa70c Fri Apr 21 14:34:25 2017 -0700
    Python script for converting an expression matrix into a barchart bed, refs #19155
• src/utils/expMatrixToBarchartBed/tests/test.meta
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    3e05ac599db2f7a03948d96f5e24de16095fa70c Fri Apr 21 14:34:25 2017 -0700
    Python script for converting an expression matrix into a barchart bed, refs #19155
• src/utils/expMatrixToBarchartBed/tests/test.output
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    3e05ac599db2f7a03948d96f5e24de16095fa70c Fri Apr 21 14:34:25 2017 -0700
    Python script for converting an expression matrix into a barchart bed, refs #19155
• src/utils/makefile
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    3f3872bdc25b12cda856dacf66679dcf9c8f283d Wed Apr 19 15:49:21 2017 -0700
    no need to deliver gitTools scripts in userApps, good enough to deliver only in-house no redmine
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    3e05ac599db2f7a03948d96f5e24de16095fa70c Fri Apr 21 14:34:25 2017 -0700
    Python script for converting an expression matrix into a barchart bed, refs #19155
• src/utils/qa/joinerBatchKeys.csh
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    3837053174a8f39a555150e38d8763ef25309c90 Wed Apr 19 16:24:35 2017 -0700
    Modifying joiner batch scripts so non soe emails still receive notifications that the scripts are done, no refs
• src/utils/qa/joinerBatchTimes.csh
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    3837053174a8f39a555150e38d8763ef25309c90 Wed Apr 19 16:24:35 2017 -0700
    Modifying joiner batch scripts so non soe emails still receive notifications that the scripts are done, no refs
• src/utils/qa/weeklybld/buildEnv.csh
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    c094b650e99784b7311d20975a26bfbdd3af45c8 Mon Apr 24 10:29:38 2017 -0700
    v348 final build refs #19231

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