File Changes for max

v348_base to v349_preview (2017-04-24 to 2017-05-01) v349

• .gitignore
  • lines changed 1, context: html, text, full: html, text
    2b9a3a726493d66c526e3d8256178ff3e12c7e3c Fri Apr 28 16:48:03 2017 -0700
    renaming pylib to pyLib after Angie's suggestion (thanks) and adding a better error message when graphviz was not found. refs #13634
• src/hg/hgGeneGraph/README.txt
  • lines changed 13, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
• src/hg/hgGeneGraph/hgGeneGraph
  • lines changed 1951, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
  • lines changed 38, context: html, text, full: html, text
    2b9a3a726493d66c526e3d8256178ff3e12c7e3c Fri Apr 28 16:48:03 2017 -0700
    renaming pylib to pyLib after Angie's suggestion (thanks) and adding a better error message when graphviz was not found. refs #13634
• src/hg/hgGeneGraph/makefile
  • lines changed 35, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
• src/hg/htdocs/goldenPath/help/hgGeneGraph.html
  • lines changed 195, context: html, text, full: html, text
    7db53e413100cb37da4e8544b1683e20fa3faf72 Tue Apr 25 17:32:52 2017 -0700
    adding gene graph documentation, refs #13634
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 4, context: html, text, full: html, text
    85b7e127918eea3bcdbe83b6878fd7fcefedf76a Mon Apr 24 16:57:48 2017 -0700
    changing interactions track based on suggestions from Matt, refs #13634
  • lines changed 16, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 20, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
• src/hg/makeDb/trackDb/makefile
  • lines changed 3, context: html, text, full: html, text
    731b5bfe0f7049622ab803a4f88bc0d65d594359 Thu Apr 27 14:31:02 2017 -0700
    removing some random gisaid thing I found, no redmine
• src/hg/pyLib/hgLib.py
  • lines changed 512, context: html, text, full: html, text
    2b9a3a726493d66c526e3d8256178ff3e12c7e3c Fri Apr 28 16:48:03 2017 -0700
    renaming pylib to pyLib after Angie's suggestion (thanks) and adding a better error message when graphviz was not found. refs #13634
• src/hg/pyLib/makefile
  • lines changed 62, context: html, text, full: html, text
    2b9a3a726493d66c526e3d8256178ff3e12c7e3c Fri Apr 28 16:48:03 2017 -0700
    renaming pylib to pyLib after Angie's suggestion (thanks) and adding a better error message when graphviz was not found. refs #13634
• src/hg/pylib/hgLib.py
  • lines changed 508, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
  • lines changed 508, context: html, text, full: html, text
    2b9a3a726493d66c526e3d8256178ff3e12c7e3c Fri Apr 28 16:48:03 2017 -0700
    renaming pylib to pyLib after Angie's suggestion (thanks) and adding a better error message when graphviz was not found. refs #13634
• src/hg/pylib/hgLib.pyo
  • lines changed 0, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
  • lines changed 0, context: html, text, full: html, text
    2b9a3a726493d66c526e3d8256178ff3e12c7e3c Fri Apr 28 16:48:03 2017 -0700
    renaming pylib to pyLib after Angie's suggestion (thanks) and adding a better error message when graphviz was not found. refs #13634
• src/hg/pylib/makefile
  • lines changed 62, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
  • lines changed 62, context: html, text, full: html, text
    2b9a3a726493d66c526e3d8256178ff3e12c7e3c Fri Apr 28 16:48:03 2017 -0700
    renaming pylib to pyLib after Angie's suggestion (thanks) and adding a better error message when graphviz was not found. refs #13634
• src/hg/utils/markDownToHtml/markDownToHtml
  • lines changed 11, context: html, text, full: html, text
    db0b5db00903b7fb9513f88e785007252e0816ae Wed Apr 26 13:04:14 2017 -0700
    adding a quickly hacked converter for static pages used for gene interactions track doc page, refs #13634
• src/hg/utils/markDownToHtml/staticPage.html
  • lines changed 19, context: html, text, full: html, text
    db0b5db00903b7fb9513f88e785007252e0816ae Wed Apr 26 13:04:14 2017 -0700
    adding a quickly hacked converter for static pages used for gene interactions track doc page, refs #13634
• src/hg/utils/markDownToHtml/staticPage.lua
  • lines changed 413, context: html, text, full: html, text
    db0b5db00903b7fb9513f88e785007252e0816ae Wed Apr 26 13:04:14 2017 -0700
    adding a quickly hacked converter for static pages used for gene interactions track doc page, refs #13634
• src/product/installer/browserSetup.sh
  • lines changed 1, context: html, text, full: html, text
    9c36075677842f13a1655252218014bd0ddcf556 Wed Apr 26 09:59:51 2017 -0700
    gbic: fixing bug that appears with mariadb and a non-empty transaction log
• src/utils/bedBestTranscript
  • lines changed 49, context: html, text, full: html, text
    ae427c75bc1aa63033fb656a0f84ddc0c45486bf Fri Apr 28 18:03:13 2017 -0700
    Adding two more tools required for building the gene interactions track, refs #13634
• src/utils/bedJoinTabOffset
  • lines changed 4, context: html, text, full: html, text
    fb682f5daed16fba30b6f1b9d32cad52179113ed Mon Apr 24 16:55:59 2017 -0700
    bedJoinTabOffset: making sure that input file is tab-separated, refs #18736
• src/utils/bedNamePickFirst
  • lines changed 38, context: html, text, full: html, text
    ae427c75bc1aa63033fb656a0f84ddc0c45486bf Fri Apr 28 18:03:13 2017 -0700
    Adding two more tools required for building the gene interactions track, refs #13634
• src/utils/ggGeneClasses
  • lines changed 465, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
• src/utils/ggGpmlToTag
  • lines changed 325, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
• src/utils/ggKgmlToTab
  • lines changed 252, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
• src/utils/ggMsrToTab
  • lines changed 88, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
• src/utils/ggPidToTab
  • lines changed 435, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
• src/utils/ggPpiToTab
  • lines changed 688, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
• src/utils/ggSpfToTab
  • lines changed 132, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
• src/utils/ggTables
  • lines changed 1255, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
• src/utils/makefile
  • lines changed 9, context: html, text, full: html, text
    16720e7dfab79a7f60e91f0cb102a213c3e4738a Fri Apr 28 15:39:08 2017 -0700
    first big commit for hgGeneGraph. Others will follow as QA progresses. refs #13634
  • lines changed 4, context: html, text, full: html, text
    ae427c75bc1aa63033fb656a0f84ddc0c45486bf Fri Apr 28 18:03:13 2017 -0700
    Adding two more tools required for building the gene interactions track, refs #13634