Commits for max

v350_preview2 to v350_base (2017-05-29 to 2017-06-05) v350

e50eb37345c15103c27e279de68e0837bf96d434 Tue May 30 14:26:23 2017 -0700

• fixing hgSession bug after my last change, refs #19430
  • src/hg/hgSession/hgSession.c - lines changed 25, context: html, text, full: html, text

3b2e14c90156120b53c5031856842de0c57ca58c Tue May 30 17:34:02 2017 -0700

• gene interactions track: add to hgGene, patch GBIC/GBIB for it, refs #13634
  • src/browserbox/root/updateBrowser.sh - lines changed 8, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Human/links.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/lib/ggSymbol.as - lines changed 5, context: html, text, full: html, text
  • src/product/installer/browserSetup.sh - lines changed 4, context: html, text, full: html, text
  • src/utils/ggTables - lines changed 14, context: html, text, full: html, text

54746c4cc1d3b1e5c0adb66cad9b90db33f7f5a8 Wed May 31 10:32:15 2017 -0700

• fixing up all.joiner, refs #13634
  • src/hg/makeDb/schema/all.joiner - lines changed 6, context: html, text, full: html, text

6a0e43196a3a99808b3c26252ce6ca30ee2c574f Wed May 31 13:43:38 2017 -0700

• fixing bug when no links are left, refs #13634
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 7, context: html, text, full: html, text

f4290c666c7402ed2ecbbd7f4058ba76e7988bb5 Wed May 31 17:00:43 2017 -0700

• renaming hgGene links to protein interactions, refs #13634
  • src/hg/hgGene/hgGeneData/Human/links.ra - lines changed 3, context: html, text, full: html, text

651345208376ec49d6ba1a4a037f43cab89ad4ff Thu Jun 1 09:10:07 2017 -0700

• adding gene interactions to tools menu, refs #13634
  • src/hg/htdocs/inc/globalNavBar.inc - lines changed 1, context: html, text, full: html, text

6c3389d97b58ad04533a072efa1858dcadcf00e1 Thu Jun 1 09:22:08 2017 -0700

• allowing default gene and removing assembly if not known, refs #13634
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 13, context: html, text, full: html, text
  • src/hg/pyLib/hgLib.py - lines changed 7, context: html, text, full: html, text

c3ad8f42fcb9df72943c002404152f77c5802a98 Thu Jun 1 09:57:29 2017 -0700

• fixing incorrect db counts on the low level menu, refs #13634
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 12, context: html, text, full: html, text

ed43585bcfb32162fecd950fe59b99483b59a5bb Thu Jun 1 13:51:06 2017 -0700

• changing it to gene interactions, refs #13634
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 2, context: html, text, full: html, text

5576f303e5975afc8c096289bbe58231bc0afc7d Fri Jun 2 11:25:35 2017 -0700

• fixing biocarta links, refs #13634
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 2, context: html, text, full: html, text

7727c24e06341a267e7561409f7bf7a3293d88ab Fri Jun 2 11:54:51 2017 -0700

• changes after code review, refs #19510
  • src/hg/hgGeneGraph/README.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgGeneGraph.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg19.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/pyLib/makefile - lines changed 8, context: html, text, full: html, text
  • src/userApps/README - lines changed 1, context: html, text, full: html, text

d87311a4a4a25c703fff51e32d5a52574feaceb5 Fri Jun 2 14:44:21 2017 -0700

• adding the evidence field to the ggEventDb, refs #13634
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 40, context: html, text, full: html, text

c9cedab62ccadf62530d2586f9d771c289d3ea86 Fri Jun 2 17:16:50 2017 -0700

• adding openBel as a data source, refs #13634
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 1, context: html, text, full: html, text

71495d97a500eb0b1f176584e677c0d3965bf9ae Fri Jun 2 17:22:25 2017 -0700

• improving layout of evidence a bit, refs #13634
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 11, context: html, text, full: html, text

96d63c692fc15357af3800b6a0c363a18d33db89 Sat Jun 3 08:45:23 2017 -0700

• adding support and converter for the openbel dataset, refs #13634
  • src/hg/htdocs/goldenPath/help/hgGeneGraph.html - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/ggEventDb.as - lines changed 1, context: html, text, full: html, text
  • src/utils/ggBelCsvToTab - lines changed 277, context: html, text, full: html, text
  • src/utils/ggPidToTab - lines changed 10, context: html, text, full: html, text
  • src/utils/ggTables - lines changed 12, context: html, text, full: html, text

8f07ea1e9137dc164688def8459f6784879ebbeb Sun Jun 4 08:09:48 2017 -0700

• fixes for openbel dataset in hgGeneGraph, refs #13634
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 8, context: html, text, full: html, text
  • src/utils/ggBelCsvToTab - lines changed 21, context: html, text, full: html, text

884a11762453d7f4141aed366f3d1eaa2a428a20 Sun Jun 4 23:59:50 2017 -0700

• a few more fixes for openbel and gpml, refs #13634
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 2, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgGeneGraph.html - lines changed 30, context: html, text, full: html, text
  • src/utils/ggBelCsvToTab - lines changed 56, context: html, text, full: html, text
  • src/utils/ggGpmlToTab - lines changed 329, context: html, text, full: html, text
  • src/utils/ggGpmlToTag - lines changed 325, context: html, text, full: html, text

9c45aaa0203cbae28af9a39501d4b00d948be9ed Mon Jun 5 00:04:11 2017 -0700

• renaming protein to gene interaction viewer in the help doc, refs #13634
  • src/hg/htdocs/goldenPath/help/hgGeneGraph.html - lines changed 5, context: html, text, full: html, text