All File Changes

v383_base to v384_preview (2019-06-10 to 2019-06-17) v384

• src/hg/cirm/cdw/lib/cdwNavBar.h
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    88397e74fca8a32b42529c845505cda5cbc43512 Mon Jun 10 14:31:49 2019 -0700
    Shifting Analysis->Query to Metadata Query as its CGI top-level menu item as requested. refs #23384.
• src/hg/encode3/encodeDataWarehouse/edwScriptSubmitStatus/edwScriptSubmitStatus.c
  • lines changed 1, context: html, text, full: html, text
    3b2f2b6a075942048a3acac89af44e332a326b7b Thu Jun 13 16:23:19 2019 -0700
    Enable > 4GB uploads by increasing maximium size of dyString to long (64 bits size) instead of int (32 bits size). This limit was impeding uploads artificially at 4GB.
• src/hg/encode3/encodeDataWarehouse/edwWebAuthLogin/edwWebAuthLogin.c
  • lines changed 1, context: html, text, full: html, text
    3b2f2b6a075942048a3acac89af44e332a326b7b Thu Jun 13 16:23:19 2019 -0700
    Enable > 4GB uploads by increasing maximium size of dyString to long (64 bits size) instead of int (32 bits size). This limit was impeding uploads artificially at 4GB.
• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 1, context: html, text, full: html, text
    5af24ba61729f1885222d329d1be2479454bb2a6 Tue Jun 11 10:29:28 2019 -0700
    fix some (non)problems in response to code review.
  • lines changed 3, context: html, text, full: html, text
    e9741cd6fb24c97bc19ce727ba804638f7d1f65a Thu Jun 13 11:22:31 2019 -0700
    fix bug that resulted in a crash if attached hubs have error messages
• src/hg/hgSession/backup.c
  • lines changed 2, context: html, text, full: html, text
    93355a504a563b0e365231e32a3f71174e2b3884 Wed Jun 12 01:48:55 2019 -0700
    Increase background timeout wait. Genome-euro machine is not as fast. refs #23628.
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 1, context: html, text, full: html, text
    3dfdf8e7b4b5fce169500059f11dccdb549cbf7e Wed Jun 5 14:52:49 2019 -0700
    Add pennantIcon to supertrack UI page. refs #23403
  • lines changed 1, context: html, text, full: html, text
    22de2ca120322e016c858be3738ae1be34f5b5f8 Thu Jun 13 15:24:22 2019 -0700
    fixed a couple of other places where bigLolly was assumed to be a stand-alone type with no addtional words
• src/hg/hgTracks/hgTracks.c
  • lines changed 8, context: html, text, full: html, text
    dd919a184eed24110f134dec8b56b61f034d23a0 Mon Jun 10 18:26:45 2019 -0700
    Finish initial implementation of multi-region link on interact track details. refs #22422
  • lines changed 6, context: html, text, full: html, text
    65490776b922ad5a6ba63214bc015c3f61c5fad2 Wed Jun 12 14:56:14 2019 -0700
    Adding custom track support for hic plus a couple cosmetic changes, refs #18842
• src/hg/hgTracks/hgTracks.h
  • lines changed 3, context: html, text, full: html, text
    65490776b922ad5a6ba63214bc015c3f61c5fad2 Wed Jun 12 14:56:14 2019 -0700
    Adding custom track support for hic plus a couple cosmetic changes, refs #18842
• src/hg/hgTracks/hicTrack.c
  • lines changed 2, context: html, text, full: html, text
    65490776b922ad5a6ba63214bc015c3f61c5fad2 Wed Jun 12 14:56:14 2019 -0700
    Adding custom track support for hic plus a couple cosmetic changes, refs #18842
• src/hg/hgc/hgc.c
  • lines changed 4, context: html, text, full: html, text
    41b17cef5bd19dd76020705e3d1037aba8aefc5f Thu Dec 13 13:14:02 2018 -0800
    Add support for encode3/4 TFBS clusters. refs #21139
• src/hg/hgc/hgc.h
  • lines changed 1, context: html, text, full: html, text
    41b17cef5bd19dd76020705e3d1037aba8aefc5f Thu Dec 13 13:14:02 2018 -0800
    Add support for encode3/4 TFBS clusters. refs #21139
• src/hg/hgc/interactClick.c
  • lines changed 22, context: html, text, full: html, text
    c8cca307cadefdd6245ab8d1784478c95a717c88 Tue Sep 11 18:30:02 2018 -0700
    First steps toward multi-region link on details page. refs #21917
  • lines changed 79, context: html, text, full: html, text
    5dffa4e472b83289e2bb9d65bbdc8541b0a48c82 Mon Nov 26 17:15:58 2018 -0800
    Resolve merge cconflict
  • lines changed 21, context: html, text, full: html, text
    6f75c327bcd0cfc8bf68dfa1227aabb579120698 Mon Dec 17 12:37:37 2018 -0800
    Merge branch 'master' into interact-multiregion
  • lines changed 29, context: html, text, full: html, text
    a06ad24a3fcaa4e141be050c4d289d0f0ce99589 Mon Dec 17 17:22:40 2018 -0800
    Add checksum (SHA1) file required by multiregion feature. Still needs a way to view entire virtual chrom. refs #22422
  • lines changed 104, context: html, text, full: html, text
    dd919a184eed24110f134dec8b56b61f034d23a0 Mon Jun 10 18:26:45 2019 -0700
    Finish initial implementation of multi-region link on interact track details. refs #22422
  • lines changed 3, context: html, text, full: html, text
    9d2a5aa1edbb60bde8171a5da9bb90c1129dccfa Tue Jun 11 16:42:51 2019 -0700
    Add setting to enable multi-regions link on interact track details. refs #22422
• src/hg/hgc/peakClusters.c
  • lines changed 35, context: html, text, full: html, text
    41b17cef5bd19dd76020705e3d1037aba8aefc5f Thu Dec 13 13:14:02 2018 -0800
    Add support for encode3/4 TFBS clusters. refs #21139
• src/hg/htdocs/FAQ/FAQreleases.html
  • lines changed 2, context: html, text, full: html, text
    1e6815ab4553ee14f55988433f62fe56e5113214 Thu Jun 13 14:19:14 2019 -0700
    Adding new assembly bosTau9 to FAQreleases #22425
• src/hg/htdocs/goldenPath/credits.html
  • lines changed 8, context: html, text, full: html, text
    8b4bac56e4f1a624a94e08ea943564e9f2799d4f Fri Jun 14 09:24:29 2019 -0700
    Adding new assembly bosTau9 to credits.html #22425
• src/hg/htdocs/goldenPath/help/bigGenePred.html
  • lines changed 42, context: html, text, full: html, text
    ced5bb6f2d3bff2cbb12c8d7a91ec2560868471f Thu Jun 13 13:01:29 2019 -0700
    Adding hub example and image #15449
  • lines changed 10, context: html, text, full: html, text
    b94d44b6a0b2fe7a114ba6ba04a0831cd674fed3 Thu Jun 13 17:00:27 2019 -0700
    minor wording changes #15449
  • lines changed 1, context: html, text, full: html, text
    b34f0a8b1a7342b89f60e34ed7d00ad01e8d604b Fri Jun 14 13:49:19 2019 -0700
    Fixing minor typo #15449
• src/hg/htdocs/goldenPath/help/interact.html
  • lines changed 2, context: html, text, full: html, text
    be3e19cef95c229660435527393d852a81da80d2 Wed Jun 12 14:18:12 2019 -0700
    Fixing a maxPixel reference Bob and I noticed in the interact help page.
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 33, context: html, text, full: html, text
    814c185f406c5669b5b3d5ecf5dcc505650a1a7e Tue Jun 11 10:33:30 2019 -0700
    Updating newarch.html to include ENCODE3 tfbs announcement, refs #23243
  • lines changed 29, context: html, text, full: html, text
    a37997b9cc519202c89d2b66ae0ec69b86e392f6 Tue Jun 11 16:10:16 2019 -0700
    Editing newarch for encode 3 tfbs tracks announcements, refs #23243
  • lines changed 11, context: html, text, full: html, text
    f82f45f2edeaae2961d03fd02705918f12d11ea3 Wed Jun 12 09:15:17 2019 -0700
    Adding encode 3 tbfs announcements to newarch & indexNews, refs #23243
  • lines changed 1, context: html, text, full: html, text
    cda2ed847a656702571bf17b4c87fd8acca76616 Wed Jun 12 09:19:33 2019 -0700
    Editing newsarch.html & indexNews.html for encode 3 tfbs release, refs #21139
  • lines changed 1, context: html, text, full: html, text
    5d35951bbf4fbb6a8e8bded8720f52a583a79bc0 Wed Jun 12 09:27:39 2019 -0700
    Editing newsarch.html & indexNews.html for encode 3 tfbs release x2, refs #21139
  • lines changed 40, context: html, text, full: html, text
    e50020d950428abe91a91dfe3dc1c2655a967682 Wed Jun 12 14:26:39 2019 -0700
    making edits to newsarch & indexNews for encode 3 tfbs release, refs #21339
  • lines changed 12, context: html, text, full: html, text
    3add8c135a4c8f08b1eaef1f41facb76193ef0bc Thu Jun 13 17:06:14 2019 -0700
    Adding newsarch for Backup CT feature #23655
  • lines changed 13, context: html, text, full: html, text
    743cce71f35609be0793fe89a87d93a22cc83a80 Mon Jun 17 09:54:10 2019 -0700
    Adding URL links and edits to the encode3 announcement, refs #23243
• src/hg/htdocs/images/bigGenePredHub.png
  • lines changed 0, context: html, text, full: html, text
    ced5bb6f2d3bff2cbb12c8d7a91ec2560868471f Thu Jun 13 13:01:29 2019 -0700
    Adding hub example and image #15449
• src/hg/htdocs/indexNews.html
  • lines changed 10, context: html, text, full: html, text
    f82f45f2edeaae2961d03fd02705918f12d11ea3 Wed Jun 12 09:15:17 2019 -0700
    Adding encode 3 tbfs announcements to newarch & indexNews, refs #23243
  • lines changed 1, context: html, text, full: html, text
    cda2ed847a656702571bf17b4c87fd8acca76616 Wed Jun 12 09:19:33 2019 -0700
    Editing newsarch.html & indexNews.html for encode 3 tfbs release, refs #21139
  • lines changed 1, context: html, text, full: html, text
    e50020d950428abe91a91dfe3dc1c2655a967682 Wed Jun 12 14:26:39 2019 -0700
    making edits to newsarch & indexNews for encode 3 tfbs release, refs #21339
  • lines changed 4, context: html, text, full: html, text
    743cce71f35609be0793fe89a87d93a22cc83a80 Mon Jun 17 09:54:10 2019 -0700
    Adding URL links and edits to the encode3 announcement, refs #23243
• src/hg/inc/hvGfx.h
  • lines changed 2, context: html, text, full: html, text
    c8cca307cadefdd6245ab8d1784478c95a717c88 Tue Sep 11 18:30:02 2018 -0700
    First steps toward multi-region link on details page. refs #21917
• src/hg/inc/interact.h
  • lines changed 3, context: html, text, full: html, text
    dd919a184eed24110f134dec8b56b61f034d23a0 Mon Jun 10 18:26:45 2019 -0700
    Finish initial implementation of multi-region link on interact track details. refs #22422
• src/hg/inc/trackDb.h
  • lines changed 3, context: html, text, full: html, text
    09a9db10915068260ce4a3e16affe0ddface2617 Wed Jun 5 14:57:22 2019 -0700
    Allow spec'ing a trackDb field as not inherited from supertrack. To replace 'pennantIcon none' construct, as per discussion with QA. refs #23403
  • lines changed 7, context: html, text, full: html, text
    bf0f2a64192b5c80db6ff314a3fa66266976ea8f Tue Jun 11 12:57:07 2019 -0700
    ongoing work on trackDb caching
  • lines changed 3, context: html, text, full: html, text
    42e4fcaeceaed8da9e9ddcad54e120677194a9e4 Wed Jun 12 15:18:57 2019 -0700
    add caching expiration on trackDb cache
• src/hg/lib/customFactory.c
  • lines changed 201, context: html, text, full: html, text
    65490776b922ad5a6ba63214bc015c3f61c5fad2 Wed Jun 12 14:56:14 2019 -0700
    Adding custom track support for hic plus a couple cosmetic changes, refs #18842
• src/hg/lib/encode/wgEncodeGencodeGeneSymbol.sql
  • lines changed 1, context: html, text, full: html, text
    0a6421e764888bb6e8e1b2058501f7ce4188d814 Mon Jun 17 02:08:53 2019 -0700
    import of prerelease of gencode V31lift37
• src/hg/lib/hdb.c
  • lines changed 1, context: html, text, full: html, text
    e91fa7d8dfaaf6ae2311ffc52b370fab6827314a Wed Jun 5 14:55:59 2019 -0700
    Allow spec'ing a trackDb field as not inherited from supertrack. To replace 'pennantIcon none' construct, as per discussion with QA. refs #23403
  • lines changed 7, context: html, text, full: html, text
    42e4fcaeceaed8da9e9ddcad54e120677194a9e4 Wed Jun 12 15:18:57 2019 -0700
    add caching expiration on trackDb cache
• src/hg/lib/hubConnect.c
  • lines changed 18, context: html, text, full: html, text
    bf0f2a64192b5c80db6ff314a3fa66266976ea8f Tue Jun 11 12:57:07 2019 -0700
    ongoing work on trackDb caching
  • lines changed 8, context: html, text, full: html, text
    42e4fcaeceaed8da9e9ddcad54e120677194a9e4 Wed Jun 12 15:18:57 2019 -0700
    add caching expiration on trackDb cache
• src/hg/lib/hui.c
  • lines changed 1, context: html, text, full: html, text
    6be66cbb52c9d2e9501d306af36bbce241008753 Mon Jun 10 17:58:24 2019 -0700
    bigLolly has words after it so a type check needs to be startsWith()
• src/hg/lib/interact.c
  • lines changed 12, context: html, text, full: html, text
    dd919a184eed24110f134dec8b56b61f034d23a0 Mon Jun 10 18:26:45 2019 -0700
    Finish initial implementation of multi-region link on interact track details. refs #22422
• src/hg/lib/trackDbCustom.c
  • lines changed 10, context: html, text, full: html, text
    09a9db10915068260ce4a3e16affe0ddface2617 Wed Jun 5 14:57:22 2019 -0700
    Allow spec'ing a trackDb field as not inherited from supertrack. To replace 'pennantIcon none' construct, as per discussion with QA. refs #23403
  • lines changed 93, context: html, text, full: html, text
    bf0f2a64192b5c80db6ff314a3fa66266976ea8f Tue Jun 11 12:57:07 2019 -0700
    ongoing work on trackDb caching
  • lines changed 40, context: html, text, full: html, text
    42e4fcaeceaed8da9e9ddcad54e120677194a9e4 Wed Jun 12 15:18:57 2019 -0700
    add caching expiration on trackDb cache
  • lines changed 1, context: html, text, full: html, text
    22de2ca120322e016c858be3738ae1be34f5b5f8 Thu Jun 13 15:24:22 2019 -0700
    fixed a couple of other places where bigLolly was assumed to be a stand-alone type with no addtional words
  • lines changed 52, context: html, text, full: html, text
    ee62d16a22952da724d577af259cdeae1c6522c8 Sat Jun 15 09:06:55 2019 -0700
    add logging to cache, fix a bug unmapping the wrong address
• src/hg/makeDb/doc/hg38/gencode.txt
  • lines changed 512, context: html, text, full: html, text
    00d631b305da84b695309ff2f85ae8d25cd01fc7 Mon Jun 17 02:13:06 2019 -0700
    split gencode hg38 doc into a separate file
• src/hg/makeDb/doc/hg38/hg38.txt
  • lines changed 511, context: html, text, full: html, text
    59ea63821d41438b12fb9170d6d3c5dee3e7bb2f Mon Jun 17 02:50:46 2019 -0700
    split gencode hg38 doc into a separate file
• src/hg/makeDb/doc/mm10.txt
  • lines changed 1, context: html, text, full: html, text
    49ffbb80d1d5b6bb0df38a114edbbb74a5e794d6 Mon Jun 17 02:16:59 2019 -0700
    fixed typo in doc
• src/hg/makeDb/doc/transMapTracks.txt
  • lines changed 38, context: html, text, full: html, text
    0a6421e764888bb6e8e1b2058501f7ce4188d814 Mon Jun 17 02:08:53 2019 -0700
    import of prerelease of gencode V31lift37
• src/hg/makeDb/genbank/etc/hgwbeta.dbs
  • lines changed 2, context: html, text, full: html, text
    f6f0d6f96135ce606aa96ac3a17869acb1e3cc5d Wed Jun 12 15:30:51 2019 -0700
    Turning on GenBank updates for new assembly #20769
• src/hg/makeDb/outside/gencode/gencodeLoad.mk
  • lines changed 25, context: html, text, full: html, text
    0a6421e764888bb6e8e1b2058501f7ce4188d814 Mon Jun 17 02:08:53 2019 -0700
    import of prerelease of gencode V31lift37
• src/hg/makeDb/schema/all.joiner
  • lines changed 91, context: html, text, full: html, text
    0a6421e764888bb6e8e1b2058501f7ce4188d814 Mon Jun 17 02:08:53 2019 -0700
    import of prerelease of gencode V31lift37
• src/hg/makeDb/trackDb/bacteria/staAur2/cons369way.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/birds/geoFor1/cons7way.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/chicken/galGal4/description.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/chicken/galGal6/cons77way.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/chinchilla/chiLan1/description.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/criGri/criGriChoV1/description.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/dog/canFamPoodle1/gap.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/drosophila/bdtnpChipper.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/drosophila/bdtnpChipperOld.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/drosophila/chainDm2.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/drosophila/dm6/cons124way.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/drosophila/dm6/cons27way.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/drosophila/dp3/flyBaseGene.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/fugu/fr1/description.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/gibbon/nomLeu3/description.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/h1n1/h1n1/h1n1Gene.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/h1n1/h1n1/humanHA.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/h1n1/h1n1/swineHA.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/hiv/vax003PosSel.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/hiv/vax004PosSelLoc.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/hiv/vax004PosSelRace.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/hiv/vax004PosSelVac.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/chainNetPrimate.ra
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    4affda7c652771a36b7b2c39156412a0d01c2ede Thu Jun 13 09:54:22 2019 -0700
    Updating chain/net composites with new baboon release #20769
• src/hg/makeDb/trackDb/human/hg12/blastzBestMouse.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg12/rnaGene.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg12/slamMouse.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg12/slamNonCodingMouse.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg12/slamNonCodingRat.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg13/humMusL.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg13/humanNet.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg13/slamMouse.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg13/slamNonCodingMouse.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg13/slamNonCodingRat.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg13/slamRat.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg15/hg15Mm3L.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg15/humanNet.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg16/chimpDels.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg16/hapmapLd.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg17/blastzBestRn3.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg17/blastzTightMm4.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg17/encodeGisChipPetAll.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg17/encodeNhgriDnaseHsChipRaw.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg17/encodeSangerChip.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg17/encodeSangerChipJan07.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg17/encodeUWRegulomeBase.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg17/encodeYaleChipPval.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg17/encodeYaleChipSig.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg17/encodeYaleChipSignal.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg17/exonWalk.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg17/genomeVar.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg17/hapmapLd.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg17/hars.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg17/rertyHumanDiversityLd.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg17/sangamoDnaseHs.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg18/cnpRedon.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg18/encodeSangerChip.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg18/encodeUWRegulomeBase.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg18/encodeYaleChipPval.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg18/encodeYaleChipSig.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg18/hapmapLd.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg18/hars.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
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• src/hg/makeDb/trackDb/human/hg18/mammalPsg.html
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• src/hg/makeDb/trackDb/human/hg18/pgSnp.html
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• src/hg/makeDb/trackDb/human/hg18/pgSnpHgwdev.html
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    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg18/snpArrayBeta.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg18/snpArrayWith1M.html
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    6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700
    Small html errors found by htmlCheck
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
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    8899959d05e0557c2820ea3e9dd85a84cdb77300 Mon Jun 10 12:50:21 2019 -0700
    Editing wgEncodeReg.ra, wgEncodeReg.new.ra & trackDb.ra for the new encode3 TFBS tracks & restoring DNase tracks, refs #23243
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV31lift37.html
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    0a6421e764888bb6e8e1b2058501f7ce4188d814 Mon Jun 17 02:08:53 2019 -0700
    import of prerelease of gencode V31lift37
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV31lift37.ra
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    0a6421e764888bb6e8e1b2058501f7ce4188d814 Mon Jun 17 02:08:53 2019 -0700
    import of prerelease of gencode V31lift37
• src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra
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    8899959d05e0557c2820ea3e9dd85a84cdb77300 Mon Jun 10 12:50:21 2019 -0700
    Editing wgEncodeReg.ra, wgEncodeReg.new.ra & trackDb.ra for the new encode3 TFBS tracks & restoring DNase tracks, refs #23243
• src/hg/makeDb/trackDb/human/hg38/gdcCancer.ra
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    51cb20a275884e5b9d157f29eb11cb2f2fd2e662 Mon Jun 10 11:58:39 2019 -0700
    Adding the beta release tag to the include statement for hg38, refs #22742
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    191df6bfed3aa5d2cd8e44c63eff2c5cfdef0c9e Thu Jun 13 16:03:57 2019 -0700
    change all cancers track from being named "all" to "allCancer" so mySQL doesn't get confused
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    739197e4fc41050bc53707eef2956418d82e22aa Thu Jun 13 16:10:24 2019 -0700
    The 'all' track name was causing issues with MariaDb, refs #22742
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    51cb20a275884e5b9d157f29eb11cb2f2fd2e662 Mon Jun 10 11:58:39 2019 -0700
    Adding the beta release tag to the include statement for hg38, refs #22742
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    8899959d05e0557c2820ea3e9dd85a84cdb77300 Mon Jun 10 12:50:21 2019 -0700
    Editing wgEncodeReg.ra, wgEncodeReg.new.ra & trackDb.ra for the new encode3 TFBS tracks & restoring DNase tracks, refs #23243
• src/hg/makeDb/trackDb/human/hg38/wgEncodeReg.new.ra
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    8899959d05e0557c2820ea3e9dd85a84cdb77300 Mon Jun 10 12:50:21 2019 -0700
    Editing wgEncodeReg.ra, wgEncodeReg.new.ra & trackDb.ra for the new encode3 TFBS tracks & restoring DNase tracks, refs #23243
• src/hg/makeDb/trackDb/human/hg38/wgEncodeReg.ra
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    8899959d05e0557c2820ea3e9dd85a84cdb77300 Mon Jun 10 12:50:21 2019 -0700
    Editing wgEncodeReg.ra, wgEncodeReg.new.ra & trackDb.ra for the new encode3 TFBS tracks & restoring DNase tracks, refs #23243
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.euarchontoglireChainNet.ra
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    4affda7c652771a36b7b2c39156412a0d01c2ede Thu Jun 13 09:54:22 2019 -0700
    Updating chain/net composites with new baboon release #20769
• src/hg/makeDb/trackDb/tagTypes.tab
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    9d2a5aa1edbb60bde8171a5da9bb90c1129dccfa Tue Jun 11 16:42:51 2019 -0700
    Add setting to enable multi-regions link on interact track details. refs #22422
• src/hg/pslStats/pslStats.c
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    0a6421e764888bb6e8e1b2058501f7ce4188d814 Mon Jun 17 02:08:53 2019 -0700
    import of prerelease of gencode V31lift37
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    6a3e11a5301f835d8d503ad5ef501a2c175866b9 Mon Jun 17 04:33:57 2019 -0700
    fixed typo that as accidently committed
• src/hg/utils/refreshNamedSessionCustomTracks/refreshNamedSessionCustomTracks.c
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    3b2f2b6a075942048a3acac89af44e332a326b7b Thu Jun 13 16:23:19 2019 -0700
    Enable > 4GB uploads by increasing maximium size of dyString to long (64 bits size) instead of int (32 bits size). This limit was impeding uploads artificially at 4GB.
• src/inc/dystring.h
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    3b2f2b6a075942048a3acac89af44e332a326b7b Thu Jun 13 16:23:19 2019 -0700
    Enable > 4GB uploads by increasing maximium size of dyString to long (64 bits size) instead of int (32 bits size). This limit was impeding uploads artificially at 4GB.
• src/inc/localmem.h
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    bf0f2a64192b5c80db6ff314a3fa66266976ea8f Tue Jun 11 12:57:07 2019 -0700
    ongoing work on trackDb caching
• src/lib/dystring.c
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    3b2f2b6a075942048a3acac89af44e332a326b7b Thu Jun 13 16:23:19 2019 -0700
    Enable > 4GB uploads by increasing maximium size of dyString to long (64 bits size) instead of int (32 bits size). This limit was impeding uploads artificially at 4GB.
• src/lib/localmem.c
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    bf0f2a64192b5c80db6ff314a3fa66266976ea8f Tue Jun 11 12:57:07 2019 -0700
    ongoing work on trackDb caching
• src/lib/tests/dyStringTester.c
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    3b2f2b6a075942048a3acac89af44e332a326b7b Thu Jun 13 16:23:19 2019 -0700
    Enable > 4GB uploads by increasing maximium size of dyString to long (64 bits size) instead of int (32 bits size). This limit was impeding uploads artificially at 4GB.
• src/utils/qa/weeklybld/buildEnv.csh
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    112696cc914b3816cae49bb1a7f55c13b0dfe7db Mon Jun 17 10:01:03 2019 -0700
    v384 preview1, refs #TICKETNUM

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