Commits for hiram

v395_preview2 to v395_base (2020-03-02 to 2020-03-09) v395

ef3707f0ca7e1592d542f28fdd4b254bf104d854 Mon Mar 2 10:36:00 2020 -0800

• correct one line header message in usage() no redmine
  • src/hg/utils/bedToPsl/bedToPsl.c - lines changed 4, context: html, text, full: html, text

b9215df0d1df3b3e2a655c0fa506bcfc20f243d6 Mon Mar 2 10:40:13 2020 -0800

• correct one line header message in usage() no redmine
  • src/utils/userApps/fetchChromSizes - lines changed 1, context: html, text, full: html, text

a3499beb622c64ee44fc2e31a4191f89f46ae7cb Mon Mar 2 10:42:07 2020 -0800

• correct one line header message in usage() no redmine
  • src/hg/makeDb/hgLoadWiggle/fixStepToBedGraph.pl - lines changed 1, context: html, text, full: html, text

8a13935409e81abd2840eee06e0d11618080075b Mon Mar 2 10:44:10 2020 -0800

• correct one line header message in usage() no redmine
  • src/hg/makeDb/hgLoadWiggle/varStepToBedGraph.pl - lines changed 1, context: html, text, full: html, text

2f4731c424be7ac8fb235f755f0a6d368dd0dcc8 Mon Mar 2 10:47:40 2020 -0800

• correct one line header message in usage() no redmine
  • src/hg/genePredHisto/genePredHisto.c - lines changed 10, context: html, text, full: html, text

6224a15a5899c275ac785a49c67860284dff3de9 Mon Mar 2 10:49:54 2020 -0800

• correct one line header message in usage() no redmine
  • src/hg/genePredSingleCover/genePredSingleCover.c - lines changed 7, context: html, text, full: html, text

d45f20285f046c893863653230b6e8548a4a49d7 Mon Mar 2 10:52:00 2020 -0800

• correct one line header message in usage() no redmine
  • src/hg/genePredToMafFrames/genePredToMafFrames.c - lines changed 7, context: html, text, full: html, text

0e69037441c493289ea56f19a2e26ed24c80152a Mon Mar 2 10:58:04 2020 -0800

• correct one line header message in usage() no redmine
  • src/hg/utils/overlapSelect/overlapSelect.c - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/overlapSelect/usage.txt - lines changed 2, context: html, text, full: html, text

fe728170025b04cc26b65f933ddce4d354c5ac5f Mon Mar 2 11:02:14 2020 -0800

• correct one line header message in usage() no redmine
  • src/parasol/parasol/parasol.c - lines changed 1, context: html, text, full: html, text

4f2982742c32be90ddb2c601937a7f8531ad14e1 Mon Mar 2 12:48:11 2020 -0800

• correct one line header message in usage() no redmine
  • src/hg/pslCDnaFilter/pslCDnaFilter.c - lines changed 3, context: html, text, full: html, text
  • src/hg/pslCDnaFilter/usage.txt - lines changed 2, context: html, text, full: html, text

0186982e4dd1912d6a8bf518d5d0301901fb4e4c Mon Mar 2 12:50:21 2020 -0800

• correct one line header message in usage() no redmine
  • src/hg/pslHisto/pslHisto.c - lines changed 10, context: html, text, full: html, text

7e8a696881983f39aaf4d358a618217cae150ed8 Mon Mar 2 12:52:44 2020 -0800

• correct one line header message in usage() no redmine
  • src/hg/utils/pslMap/pslMap.c - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/pslMap/usage.txt - lines changed 7, context: html, text, full: html, text

860c752347c2a0ccc99794d772babffae640dab5 Mon Mar 2 12:54:27 2020 -0800

• correct one line header message in usage() no redmine
  • src/hg/utils/pslMapPostChain/pslMapPostChain.c - lines changed 6, context: html, text, full: html, text

ae06b237971133bc7e68daa85cb34d32cdeabd6f Mon Mar 2 12:55:59 2020 -0800

• correct one line header message in usage() no redmine
  • src/hg/pslPartition/pslPartition.c - lines changed 5, context: html, text, full: html, text

d11aff78d1b8b998525b47db166bb5128bc96374 Mon Mar 2 12:57:12 2020 -0800

• correct one line header message in usage() no redmine
  • src/hg/utils/pslRc/pslRc.c - lines changed 5, context: html, text, full: html, text

11cd242e75d51c384ededd99808435593abf85de Mon Mar 2 13:09:15 2020 -0800

• correct one line header message in usage() refs #25071
  • src/hg/pslSwap/pslSwap.c - lines changed 8, context: html, text, full: html, text

183b7ea6d5861dc5aa8ae734c27b02af6c056722 Mon Mar 2 13:10:54 2020 -0800

• correct one line header message in usage() refs #25071
  • src/hg/pslToBed/pslToBed.c - lines changed 2, context: html, text, full: html, text

b4c59514f00bdfba0db99fed67740ef8858ac583 Mon Mar 2 13:13:28 2020 -0800

• correct one line header message in usage() refs #25071
  • src/utils/rmFaDups/rmFaDups.c - lines changed 3, context: html, text, full: html, text

28240bc5f0c103b9bf8e90637e6c5464bca55dc7 Mon Mar 2 13:14:45 2020 -0800

• correct one line header message in usage() refs #25071
  • src/utils/sizeof/sizeof.c - lines changed 2, context: html, text, full: html, text

cf37e57c66f855418bc05aff039ab846ad317354 Mon Mar 2 13:20:42 2020 -0800

• correct one line header message in usage() refs #25071
  • src/hg/utils/vai.pl - lines changed 3, context: html, text, full: html, text

12454aa5329fdd7d21b31c9d187e07f81e6c082d Mon Mar 2 13:54:04 2020 -0800

• correct one line header message in usage() refs #25071
  • src/hg/utils/bedToPsl/bedToPsl.c - lines changed 1, context: html, text, full: html, text

075a3ad3e1b1e77472825a0e6daa83dde05dd022 Mon Mar 2 14:12:35 2020 -0800

• correct one line header in usage message no redmine
  • src/hg/utils/pslMapPostChain/pslMapPostChain.c - lines changed 2, context: html, text, full: html, text

d486edad7214c55c607e4c8302ec1b0e10a1daf8 Mon Mar 2 14:13:48 2020 -0800

• correct one line header in usage message no redmine
  • src/utils/cpgIslandExt/cpg_lh.c - lines changed 2, context: html, text, full: html, text

a1f736b4dc8cf37703c5bb6e85818416374e8058 Tue Mar 3 11:04:01 2020 -0800

• show inputs on startup refs #23891
  • src/hg/utils/automation/gff3ToRefLink.pl - lines changed 4, context: html, text, full: html, text

cf078156da3eb0042503c279d0c0bddb9786c355 Thu Mar 5 12:01:59 2020 -0800

• now running up Ensembl genes on assembly hubs refs #24963
  • src/hg/utils/automation/EnsGeneAutomate.pm - lines changed 10, context: html, text, full: html, text
  • src/hg/utils/automation/asmHubEnsGene.pl - lines changed 20, context: html, text, full: html, text
  • src/hg/utils/automation/asmHubTrackDb.sh - lines changed 12, context: html, text, full: html, text
  • src/hg/utils/automation/doEnsGeneUpdate.pl - lines changed 88, context: html, text, full: html, text

79fe45f9415da16d9bf774a1a92f147c00ea3809 Sat Mar 7 12:12:16 2020 -0800

• begin documentation of the multiple alignment refs #25090
  • src/hg/makeDb/doc/wuhCor1/multiz.txt - lines changed 168, context: html, text, full: html, text

a9cd9c0403a2126a2d84e5e711ac07df8ee95db5 Sat Mar 7 12:20:18 2020 -0800

• scripts used to compare all the kmers refs #25090
  • src/hg/makeDb/doc/wuhCor1/comparePair - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/doc/wuhCor1/mkCompareJobList.pl - lines changed 46, context: html, text, full: html, text

829e6da5fbf3a357ca0bc1592695f567ac817d64 Sat Mar 7 12:46:45 2020 -0800

• describing the kmer phylo tree generation procedure refs #25090
  • src/hg/makeDb/doc/wuhCor1/mkTestData.pl - lines changed 123, context: html, text, full: html, text
  • src/hg/makeDb/doc/wuhCor1/multiz.txt - lines changed 139, context: html, text, full: html, text
  • src/hg/makeDb/doc/wuhCor1/neighbor - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/makeDb/doc/wuhCor1/wuhCor1.119way.nh - lines changed 119, context: html, text, full: html, text