File Changes for chmalee

v402_base to v403_preview (2020-08-03 to 2020-08-10) v403

• src/hg/hgTracks/vcfTrack.c
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    6a8d7741dd91b8c219f367c285f5800bd389ea9b Mon Aug 10 06:02:48 2020 -0700
    Remove some debug code, #25996
• src/hg/htdocs/goldenPath/help/bigBed.html
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    76cf2d3e885d0a9f1473c703908d89f745f8fb9d Fri Aug 7 10:34:22 2020 -0700
    Adding another sentence to step 6 of the bigBed doc to help with what hosting means, refs #26004
• src/hg/lib/vcfUi.c
  • lines changed 6, context: html, text, full: html, text
    8f064cfff5b905949513f7b410f1bcd85d52100b Tue Aug 4 12:22:33 2020 -0700
    Add info icon and text for trio de novo color, refs #25983
• src/hg/makeDb/doc/hg19.txt
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    90722fe965a89529d622dc70225dea8cf3924e32 Tue Aug 4 16:53:00 2020 -0700
    Stage genome in a bottle trio vcf track, refs #25873
• src/hg/makeDb/doc/hg38/variation.txt
  • lines changed 2, context: html, text, full: html, text
    90722fe965a89529d622dc70225dea8cf3924e32 Tue Aug 4 16:53:00 2020 -0700
    Stage genome in a bottle trio vcf track, refs #25873
• src/hg/makeDb/giab/download.sh
  • lines changed 47, context: html, text, full: html, text
    90722fe965a89529d622dc70225dea8cf3924e32 Tue Aug 4 16:53:00 2020 -0700
    Stage genome in a bottle trio vcf track, refs #25873
• src/hg/makeDb/giab/make.txt
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    90722fe965a89529d622dc70225dea8cf3924e32 Tue Aug 4 16:53:00 2020 -0700
    Stage genome in a bottle trio vcf track, refs #25873
• src/hg/makeDb/giab/mergeVcfs.sh
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    90722fe965a89529d622dc70225dea8cf3924e32 Tue Aug 4 16:53:00 2020 -0700
    Stage genome in a bottle trio vcf track, refs #25873
• src/hg/makeDb/trackDb/human/hg38/tgpTrios.html
  • lines changed 29, context: html, text, full: html, text
    757048a1b97a53312b7636dcf458efaf76599d90 Tue Aug 4 12:15:07 2020 -0700
    Fixing up 1000 Genomes trio track description to describe new color options, refs #25983
• src/hg/makeDb/trackDb/human/trackDb.clinGen.ra
  • lines changed 5, context: html, text, full: html, text
    6bccfc2f21760e12c7203e99694f02b4499b9354 Tue Aug 4 09:46:03 2020 -0700
    Override default alphabetic on shortLabel ordering of clinGen composite tracks and get URLs to pubmed working, refs #24818
• src/hg/makeDb/trackDb/human/trackDb.giab.ra
  • lines changed 45, context: html, text, full: html, text
    90722fe965a89529d622dc70225dea8cf3924e32 Tue Aug 4 16:53:00 2020 -0700
    Stage genome in a bottle trio vcf track, refs #25873
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    7d169d1245946d2eb9cf2d6f65adf2fc56ef0b35 Wed Aug 5 14:06:59 2020 -0700
    Stage genome in a bottle structural variants on dev, refs #24349
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 37, context: html, text, full: html, text
    5f856345200f8861b168c85d45e267010d6b55e4 Mon Aug 3 16:40:33 2020 -0700
    Update LOVD to bigBed, refs #25841
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    90722fe965a89529d622dc70225dea8cf3924e32 Tue Aug 4 16:53:00 2020 -0700
    Stage genome in a bottle trio vcf track, refs #25873
• src/hg/utils/otto/clinGen/processClinGenDosage.py
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    c8cf0851df29747fc97ace2912d452ac4d815b45 Mon Aug 10 06:24:35 2020 -0700
    Fixing some problems in clinGenDosage otto job after code review feedback, refs #25996
• src/hg/utils/otto/dbVar/checkDbVar.sh
  • lines changed 5, context: html, text, full: html, text
    7d169d1245946d2eb9cf2d6f65adf2fc56ef0b35 Wed Aug 5 14:06:59 2020 -0700
    Stage genome in a bottle structural variants on dev, refs #24349
• src/hg/utils/otto/dbVar/checkNstd175.sh
  • lines changed 80, context: html, text, full: html, text
    7d169d1245946d2eb9cf2d6f65adf2fc56ef0b35 Wed Aug 5 14:06:59 2020 -0700
    Stage genome in a bottle structural variants on dev, refs #24349
• src/hg/utils/otto/dbVar/giabSv.as
  • lines changed 23, context: html, text, full: html, text
    7d169d1245946d2eb9cf2d6f65adf2fc56ef0b35 Wed Aug 5 14:06:59 2020 -0700
    Stage genome in a bottle structural variants on dev, refs #24349
• src/hg/utils/otto/dbVar/makefile
  • lines changed 1, context: html, text, full: html, text
    7d169d1245946d2eb9cf2d6f65adf2fc56ef0b35 Wed Aug 5 14:06:59 2020 -0700
    Stage genome in a bottle structural variants on dev, refs #24349
• src/hg/utils/otto/dbVar/processNstd175.py
  • lines changed 149, context: html, text, full: html, text
    7d169d1245946d2eb9cf2d6f65adf2fc56ef0b35 Wed Aug 5 14:06:59 2020 -0700
    Stage genome in a bottle structural variants on dev, refs #24349
• src/hg/utils/otto/lovd/checkAndLoad.sh
  • lines changed 15, context: html, text, full: html, text
    5f856345200f8861b168c85d45e267010d6b55e4 Mon Aug 3 16:40:33 2020 -0700
    Update LOVD to bigBed, refs #25841
• src/hg/utils/otto/lovd/download.sh
  • lines changed 4, context: html, text, full: html, text
    5f856345200f8861b168c85d45e267010d6b55e4 Mon Aug 3 16:40:33 2020 -0700
    Update LOVD to bigBed, refs #25841
• src/hg/utils/otto/lovd/lovd.as
  • lines changed 12, context: html, text, full: html, text
    5f856345200f8861b168c85d45e267010d6b55e4 Mon Aug 3 16:40:33 2020 -0700
    Update LOVD to bigBed, refs #25841
• src/hg/utils/otto/lovd/makefile
  • lines changed 1, context: html, text, full: html, text
    5f856345200f8861b168c85d45e267010d6b55e4 Mon Aug 3 16:40:33 2020 -0700
    Update LOVD to bigBed, refs #25841