All File Changes

v404_preview to v404_preview2 (2020-08-31 to 2020-09-07) v404

• confs/hgwbeta.hg.conf
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    876690a3e22e6b8596d2ec30f81c54f3e8878ba4 Sun Sep 6 01:11:37 2020 -0700
    Installing updated hg.conf files from UCSC servers
• src/hg/hgTracks/bigBedTrack.c
  • lines changed 23, context: html, text, full: html, text
    b8e7a2261f97338a614b7eed2aa6131da27510e1 Tue Sep 1 10:47:36 2020 -0700
    Add bigBed support for trackDb constructed mouseOvers, refs #26160
• src/hg/hgTracks/hgTracks.c
  • lines changed 27, context: html, text, full: html, text
    78baf43ba7745bac356335711703d881c038e7cc Tue Sep 1 04:35:56 2020 -0700
    fixing bug where keyboard shortcuts create a URL that is too long, refs #26140
  • lines changed 10, context: html, text, full: html, text
    7216fbf3ffc72cb77bf509c0bffe719a1daa0ed5 Sun Sep 6 16:20:34 2020 -0700
    first cut at using FreeType for font support
• src/hg/hgTracks/lollyTrack.c
  • lines changed 14, context: html, text, full: html, text
    b5d34fef6610916dc89c85f83c0e1f719f6969c3 Mon Aug 31 20:13:15 2020 -0700
    Add support for mouseOver (pattern) trackDb setting (initially to bigLolly). refs #26160
  • lines changed 6, context: html, text, full: html, text
    493af97abf810db9f4e3158710eef4822b8be56b Mon Aug 31 20:26:30 2020 -0700
    Show count of items filtered on lolly track. refs #23413
• src/hg/htdocs/blatServers.gorGor6.hgcentral
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    c17723f246d804ef7ed29b0197b8a6427b49c04c Mon Aug 31 13:59:02 2020 -0700
    Removing accidental files #26149
• src/hg/htdocs/blatServers.gorGor6.hgcentralbeta
  • lines changed 2, context: html, text, full: html, text
    c17723f246d804ef7ed29b0197b8a6427b49c04c Mon Aug 31 13:59:02 2020 -0700
    Removing accidental files #26149
• src/hg/htdocs/blatServers.gorGor6.hgcentraltest
  • lines changed 2, context: html, text, full: html, text
    c17723f246d804ef7ed29b0197b8a6427b49c04c Mon Aug 31 13:59:02 2020 -0700
    Removing accidental files #26149
• src/hg/htdocs/dbDb.gorGor6.hgcentral
  • lines changed 0, context: html, text, full: html, text
    c17723f246d804ef7ed29b0197b8a6427b49c04c Mon Aug 31 13:59:02 2020 -0700
    Removing accidental files #26149
• src/hg/htdocs/dbDb.gorGor6.hgcentralbeta
  • lines changed 1, context: html, text, full: html, text
    c17723f246d804ef7ed29b0197b8a6427b49c04c Mon Aug 31 13:59:02 2020 -0700
    Removing accidental files #26149
• src/hg/htdocs/dbDb.gorGor6.hgcentraltest
  • lines changed 1, context: html, text, full: html, text
    c17723f246d804ef7ed29b0197b8a6427b49c04c Mon Aug 31 13:59:02 2020 -0700
    Removing accidental files #26149
• src/hg/htdocs/defaultDb.gorGor6.hgcentral
  • lines changed 1, context: html, text, full: html, text
    c17723f246d804ef7ed29b0197b8a6427b49c04c Mon Aug 31 13:59:02 2020 -0700
    Removing accidental files #26149
• src/hg/htdocs/defaultDb.gorGor6.hgcentralbeta
  • lines changed 1, context: html, text, full: html, text
    c17723f246d804ef7ed29b0197b8a6427b49c04c Mon Aug 31 13:59:02 2020 -0700
    Removing accidental files #26149
• src/hg/htdocs/defaultDb.gorGor6.hgcentraltest
  • lines changed 1, context: html, text, full: html, text
    c17723f246d804ef7ed29b0197b8a6427b49c04c Mon Aug 31 13:59:02 2020 -0700
    Removing accidental files #26149
• src/hg/htdocs/genomeClade.gorGor6.hgcentral
  • lines changed 1, context: html, text, full: html, text
    c17723f246d804ef7ed29b0197b8a6427b49c04c Mon Aug 31 13:59:02 2020 -0700
    Removing accidental files #26149
• src/hg/htdocs/genomeClade.gorGor6.hgcentralbeta
  • lines changed 1, context: html, text, full: html, text
    c17723f246d804ef7ed29b0197b8a6427b49c04c Mon Aug 31 13:59:02 2020 -0700
    Removing accidental files #26149
• src/hg/htdocs/genomeClade.gorGor6.hgcentraltest
  • lines changed 1, context: html, text, full: html, text
    c17723f246d804ef7ed29b0197b8a6427b49c04c Mon Aug 31 13:59:02 2020 -0700
    Removing accidental files #26149
• src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
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    29e31e3f5d21d5e478140b2d8a970dea7b35e7ff Thu Sep 3 15:19:13 2020 -0700
    removed a space per anna. Refs #26147
  • lines changed 5, context: html, text, full: html, text
    4ed7d54dea85dbe61b1f7b4463e833a45d4c1a0e Fri Sep 4 02:55:59 2020 -0700
    toning down endorsement of Cyverse, refs #26170
• src/hg/htdocs/images/staff2020.jpg
  • lines changed 0, context: html, text, full: html, text
    b582f22112b5ad5359a78d0719d150cbb548c8fd Tue Sep 1 16:36:47 2020 -0700
    adding zoom foto to staff page
  • lines changed 0, context: html, text, full: html, text
    0be47ff0f986044fb6ce09c0178b01c3b843a30a Tue Sep 1 16:48:32 2020 -0700
    replacing image with smaller one
• src/hg/htdocs/staff.html
  • lines changed 25, context: html, text, full: html, text
    b582f22112b5ad5359a78d0719d150cbb548c8fd Tue Sep 1 16:36:47 2020 -0700
    adding zoom foto to staff page
• src/hg/inc/gencodeAttrs.h
  • lines changed 7, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/inc/hui.h
  • lines changed 3, context: html, text, full: html, text
    b5d34fef6610916dc89c85f83c0e1f719f6969c3 Mon Aug 31 20:13:15 2020 -0700
    Add support for mouseOver (pattern) trackDb setting (initially to bigLolly). refs #26160
• src/hg/inc/hvGfx.h
  • lines changed 3, context: html, text, full: html, text
    7216fbf3ffc72cb77bf509c0bffe719a1daa0ed5 Sun Sep 6 16:20:34 2020 -0700
    first cut at using FreeType for font support
• src/hg/js/hgTracks.js
  • lines changed 4, context: html, text, full: html, text
    973799e0105452c5abc032e7b036a43c81259f00 Fri Sep 4 03:23:15 2020 -0700
    next step of fixing the highlight bug with the new format, refs #26166
• src/hg/js/utils.js
  • lines changed 2, context: html, text, full: html, text
    d28b6fd99a64b76802ec9a4da1eebeaabd6cfcec Wed Sep 2 04:52:33 2020 -0700
    fixing bug in new highlight parsing code, refs #26166
  • lines changed 9, context: html, text, full: html, text
    973799e0105452c5abc032e7b036a43c81259f00 Fri Sep 4 03:23:15 2020 -0700
    next step of fixing the highlight bug with the new format, refs #26166
  • lines changed 1, context: html, text, full: html, text
    248cd38595c8dab2173623dbb7652d262fcc7b99 Mon Sep 7 06:30:54 2020 -0700
    another bugfix for the new highlight format, refs #26166
• src/hg/lib/gencodeAttrs.as
  • lines changed 6, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/lib/gencodeAttrs.c
  • lines changed 55, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/lib/gencodeAttrs.sql
  • lines changed 17, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/lib/hui.c
  • lines changed 34, context: html, text, full: html, text
    b5d34fef6610916dc89c85f83c0e1f719f6969c3 Mon Aug 31 20:13:15 2020 -0700
    Add support for mouseOver (pattern) trackDb setting (initially to bigLolly). refs #26160
• src/hg/lib/hvGfx.c
  • lines changed 6, context: html, text, full: html, text
    7216fbf3ffc72cb77bf509c0bffe719a1daa0ed5 Sun Sep 6 16:20:34 2020 -0700
    first cut at using FreeType for font support
• src/hg/makeDb/doc/assemblyEquivalence/update.2020-08-31.txt
  • lines changed 173, context: html, text, full: html, text
    d4801b8da713162acb83051810b05d175803d84f Mon Aug 31 10:26:14 2020 -0700
    updated with Ensembl v101 additions and a couple new UCSC database genomes refs #26145
  • lines changed 9, context: html, text, full: html, text
    dc0ff6b7cda41fce2d04b9cce778901be0c760bf Tue Sep 1 10:57:30 2020 -0700
    add duplicate verification refs #26145
• src/hg/makeDb/doc/calJac4/initialBuild.txt
  • lines changed 1382, context: html, text, full: html, text
    360bab4f0495de7c98aa842d94aa6a6cde876324 Wed Sep 2 17:32:14 2020 -0700
    running up window masker refs #24074
  • lines changed 261, context: html, text, full: html, text
    be590b26ca854e89606338fcfecb9c9ac85273b8 Thu Sep 3 12:53:49 2020 -0700
    ready for genbank run refs #24074
• src/hg/makeDb/doc/hg38/lastzRuns.txt
  • lines changed 18, context: html, text, full: html, text
    070e34d6b3cad774a80daaa4277a9666b68917b9 Wed Sep 2 10:16:13 2020 -0700
    mm39 chainNet done refs #22271
  • lines changed 74, context: html, text, full: html, text
    92f411c1e49f135fe0908dec77fbbc3e82a50157 Thu Sep 3 15:28:59 2020 -0700
    starting chainNet calJac4 to mm10 and hg38
  • lines changed 10, context: html, text, full: html, text
    00e3608ca2baa3d21e228a1611ca8c580bc9e65d Fri Sep 4 23:27:53 2020 -0700
    calJac4 lastz chainNet done to mm10 and hg38 refs #24074
• src/hg/makeDb/doc/makeEnsembl.txt
  • lines changed 207, context: html, text, full: html, text
    7ad632c236376136c01336310533ebec0a041bd9 Tue Sep 1 13:46:51 2020 -0700
    version 101 procedure added refs #26145
• src/hg/makeDb/doc/mm10.txt
  • lines changed 69, context: html, text, full: html, text
    92f411c1e49f135fe0908dec77fbbc3e82a50157 Thu Sep 3 15:28:59 2020 -0700
    starting chainNet calJac4 to mm10 and hg38
  • lines changed 13, context: html, text, full: html, text
    00e3608ca2baa3d21e228a1611ca8c580bc9e65d Fri Sep 4 23:27:53 2020 -0700
    calJac4 lastz chainNet done to mm10 and hg38 refs #24074
• src/hg/makeDb/doc/wuhCor1/phylogenetics.txt
  • lines changed 74, context: html, text, full: html, text
    e0ff3a40e3d38625dd8535583f92875b05c0bf9b Thu Sep 3 16:47:35 2020 -0700
    Updated with latest release (28-08-20) of sarscov2phylo tree and GISAID sequences. Change track labels as requested by GISAID. refs #26177
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    436c9c0d4b1b38ad5cd6ad29e0065f36b7440c87 Thu Sep 3 12:50:53 2020 -0700
    Added calJac4 - marmoset refs #24074
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 19, context: html, text, full: html, text
    bbd6bb52c2407aa5c46725fef114aed1a6b5b396 Thu Sep 3 12:49:32 2020 -0700
    Added calJac4 mouse; refs #24074
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 2, context: html, text, full: html, text
    436c9c0d4b1b38ad5cd6ad29e0065f36b7440c87 Thu Sep 3 12:50:53 2020 -0700
    Added calJac4 - marmoset refs #24074
• src/hg/makeDb/outside/gencode/bin/gencodeGxfToAttrs
  • lines changed 9, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsPseudoGff3Tests.attrs
  • lines changed 0, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsPseudoGff3Tests.tsv
  • lines changed 1, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsSet1GtfTest.attrs
  • lines changed 0, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsSet1GtfTest.tsv
  • lines changed 1, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsTagGff3Tests.attrs
  • lines changed 12, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsTagGff3Tests.tsv
  • lines changed 13, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsTagGtfTests.attrs
  • lines changed 12, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsTagGtfTests.tsv
  • lines changed 13, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsV19GtfTest.attrs
  • lines changed 0, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsV19GtfTest.tsv
  • lines changed 1, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsV21Gff3Test.attrs
  • lines changed 7, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsV21Gff3Test.tsv
  • lines changed 8, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsV21GtfTest.attrs
  • lines changed 7, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsV21GtfTest.tsv
  • lines changed 8, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsV27ParGff3Test.attrs
  • lines changed 11, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsV27ParGff3Test.tsv
  • lines changed 12, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsV27ParGtfTest.attrs
  • lines changed 11, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/outside/gencode/tests/expected/attrsV27ParGtfTest.tsv
  • lines changed 12, context: html, text, full: html, text
    03fcdcc33cd21dad46aa78556cdb1d87ce37f144 Mon Aug 31 12:17:03 2020 -0700
    make gencodeV35Attrs more compatible with older tables
• src/hg/makeDb/trackDb/human/clinvar.html
  • lines changed 3, context: html, text, full: html, text
    73a60632e0f247a57d5755ec8080db20f342ef34 Wed Sep 2 00:35:07 2020 -0700
    corrected typos in clinvar.html refs #26147
• src/hg/makeDb/trackDb/human/covidGwas.html
  • lines changed 75, context: html, text, full: html, text
    f7bbcc7b0da2f7371d9943d0c82d1dca85463465 Tue Sep 1 11:37:50 2020 -0700
    new covid gwas description page refs #26129
• src/hg/makeDb/trackDb/human/covidGwas.ra
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    b5d34fef6610916dc89c85f83c0e1f719f6969c3 Mon Aug 31 20:13:15 2020 -0700
    Add support for mouseOver (pattern) trackDb setting (initially to bigLolly). refs #26160
• src/hg/makeDb/trackDb/human/hg19/liftHg38.html
  • lines changed 19, context: html, text, full: html, text
    0f858952581d6dd5a29e4461c01449a419f74afb Tue Sep 1 16:39:43 2020 -0700
    Fixing typos in the HTML track description. Adding double quotes around 'target=_blank' HTML attributes. Using " where necessary. Making each line less than 100 characters long. refs #24449
• src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra
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    57f83b2f2d7af381d40815f3d09052df35ecf62e Thu Sep 3 03:12:40 2020 -0700
    improved track long names added (pLI and Scores) no refs
• src/hg/makeDb/trackDb/human/hg38/liftHg19.html
  • lines changed 18, context: html, text, full: html, text
    0f858952581d6dd5a29e4461c01449a419f74afb Tue Sep 1 16:39:43 2020 -0700
    Fixing typos in the HTML track description. Adding double quotes around 'target=_blank' HTML attributes. Using " where necessary. Making each line less than 100 characters long. refs #24449
• src/hg/makeDb/trackDb/human/trackDb.clinGen.ra
  • lines changed 23, context: html, text, full: html, text
    a06bdae0ccc48d09511db1a365eb90dcc19d251a Fri Sep 4 14:03:09 2020 -0700
    Dropping new clinGen CNV track because it contains duplicated data, refs #25562
• src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra
  • lines changed 11, context: html, text, full: html, text
    8e3c846d581409501e88234b00c4d676e77ad6b0 Wed Sep 2 07:50:52 2020 -0700
    adding nssv search to clinvar testing track, refs #26142
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    e45a1e063cd2538f4d6419cef9dedec3104f4421 Thu Sep 3 02:56:17 2020 -0700
    fixing up label of clinvar CNV track, email with Ana, no redmine
• src/hg/makeDb/trackDb/human/trackDb.dbVar.ra
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    3172db34aa668c436d2a6f2ad6bcc48dae58716a Wed Sep 2 00:49:14 2020 -0700
    shortened the track short name refs #26147
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    24daff7012d06ff3f5925019d33ccd49cb22eb6a Fri Sep 4 13:31:43 2020 -0700
    Removing release tags for dbVar #235424
• src/hg/makeDb/trackDb/human/trackDb.ra
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    c50e3a6b260a77081b5d8f13fd6451936152ece4 Thu Sep 3 08:12:16 2020 -0700
    Restoring decipherCnv track that was mysteriously deleted, refs Ana email
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    3a87cb87e916b0cce205996989206a1b89b9bdd1 Thu Sep 3 08:18:38 2020 -0700
    Staging new clinVar trackDb options on beta, refs #24850
  • lines changed 7, context: html, text, full: html, text
    8f8cc58e8b78898932144d88755bec0d32a53bae Thu Sep 3 09:23:55 2020 -0700
    Removing semiShortCircuit on old school isca tracks so clinVar searches can work, refs #26142
• src/hg/makeDb/trackDb/makefile
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    51e48525d609b69f4168bcc624e9f86fa9e05d39 Wed Sep 2 10:01:54 2020 -0700
    added calJac4 to the build refs #24074
• src/hg/makeDb/trackDb/marmoset/calJac4/description.html
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    51e48525d609b69f4168bcc624e9f86fa9e05d39 Wed Sep 2 10:01:54 2020 -0700
    added calJac4 to the build refs #24074
• src/hg/makeDb/trackDb/marmoset/calJac4/gap.html
  • lines changed 32, context: html, text, full: html, text
    51e48525d609b69f4168bcc624e9f86fa9e05d39 Wed Sep 2 10:01:54 2020 -0700
    added calJac4 to the build refs #24074
• src/hg/makeDb/trackDb/marmoset/calJac4/gold.html
  • lines changed 36, context: html, text, full: html, text
    51e48525d609b69f4168bcc624e9f86fa9e05d39 Wed Sep 2 10:01:54 2020 -0700
    added calJac4 to the build refs #24074
• src/hg/makeDb/trackDb/marmoset/calJac4/trackDb.ra
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    51e48525d609b69f4168bcc624e9f86fa9e05d39 Wed Sep 2 10:01:54 2020 -0700
    added calJac4 to the build refs #24074
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    b3623d772cd2a857c4cd7aa5ac82b0a9e1c63354 Thu Sep 3 11:45:12 2020 -0700
    adding search rule for gold/assembly track refs #24074
• src/hg/makeDb/trackDb/tagTypes.tab
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    b5d34fef6610916dc89c85f83c0e1f719f6969c3 Mon Aug 31 20:13:15 2020 -0700
    Add support for mouseOver (pattern) trackDb setting (initially to bigLolly). refs #26160
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    b8e7a2261f97338a614b7eed2aa6131da27510e1 Tue Sep 1 10:47:36 2020 -0700
    Add bigBed support for trackDb constructed mouseOvers, refs #26160
• src/hg/makeDb/trackDb/trackDb.encode3.ra
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    fdf7842dffca2a5f7d55c37cb4f75060110fe7f8 Wed Sep 2 15:04:53 2020 -0700
    Changing the ENCODE cCREs track to 'dense' from Jim's feedback, no Redmine.
• src/hg/makeDb/trackDb/trackDb.genbank.ra
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    8b31c0ea5aac5f9d1fc4a29d9b967b6bdfa73074 Mon Aug 31 16:01:25 2020 -0700
    Fixing mrna hide from code review refs #26149
• src/hg/makeDb/trackDb/virus/wuhCor1/pond.html
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    b9481ad38d30c266824b8cae98a15f82105470be Thu Sep 3 16:47:55 2020 -0700
    Making changes in response to CR refs #26152
• src/hg/makeDb/trackDb/virus/wuhCor1/potPathoIndel.html
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    34a10be3818214908473db7585ef0b07e9ad0120 Thu Sep 3 17:02:01 2020 -0700
    Changing linkout to new tab refs #26132
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra
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    8b31c0ea5aac5f9d1fc4a29d9b967b6bdfa73074 Mon Aug 31 16:01:25 2020 -0700
    Fixing mrna hide from code review refs #26149
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    7fb7307e3d51e383b2185aeb1cf18f9767376eb4 Mon Aug 31 16:06:56 2020 -0700
    Removing duplicate stanza now that the Problematic Sites track is updated on the RR, refs #26126
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    e0ff3a40e3d38625dd8535583f92875b05c0bf9b Thu Sep 3 16:47:35 2020 -0700
    Updated with latest release (28-08-20) of sarscov2phylo tree and GISAID sequences. Change track labels as requested by GISAID. refs #26177
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    0798def0f68d7afa730c50acc433949ad04dd6bb Thu Sep 3 17:17:55 2020 -0700
    Adding pennantIcon for new track refs #26132
• src/hg/pslCDnaFilter/pslCDnaFilter.c
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    34f3d96c4108f41b2bf73d72dbb5a95302c28b09 Fri Sep 4 20:18:49 2020 -0700
    removed option that was not actually used (I think this was my bad)
• src/hg/utils/automation/EnsGeneAutomate.pm
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    00f883e4f3d8479516b649b22905037eb9dd0168 Mon Aug 31 13:20:36 2020 -0700
    definitions for v101 update refs #26145
• src/hg/utils/automation/doEnsGeneUpdate.pl
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    71afd9d91414afe788f7b4fc294dc9973b4baad3 Mon Aug 31 14:57:08 2020 -0700
    construct symLinks into goldenPath for GTF file and archive files refs #26415
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    32029e8336069dd159be8945e30c6d9e9d9f3c98 Mon Aug 31 15:09:33 2020 -0700
    construct symLinks into goldenPath for GTF file and archive files refs #26415
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    645b05900827c9a0c59641d6a0a4be33846dc5a3 Tue Sep 1 12:48:38 2020 -0700
    better descriptive name in column 2 of the GTF file refs #26415
• src/hg/utils/automation/verifyBrowser.pl
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    abd5b59c9c6ad66a6b1a8c30814099f39582923b Wed Sep 2 10:59:45 2020 -0700
    show blatServer entries found refs #19883
• src/hg/utils/bigGenePredToGenePred/bigGenePredToGenePred.c
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    ab38adb3e68ab9cf4c53d9b0df0ebf46f51ca999 Fri Sep 4 11:31:15 2020 -0700
    added bigGenePredToGenePred command
• src/hg/utils/bigGenePredToGenePred/makefile
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    ab38adb3e68ab9cf4c53d9b0df0ebf46f51ca999 Fri Sep 4 11:31:15 2020 -0700
    added bigGenePredToGenePred command
• src/hg/utils/bigGenePredToGenePred/tests/expected/basicTest.gp
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    ab38adb3e68ab9cf4c53d9b0df0ebf46f51ca999 Fri Sep 4 11:31:15 2020 -0700
    added bigGenePredToGenePred command
• src/hg/utils/bigGenePredToGenePred/tests/input/basic.bigGpIn
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    ab38adb3e68ab9cf4c53d9b0df0ebf46f51ca999 Fri Sep 4 11:31:15 2020 -0700
    added bigGenePredToGenePred command
• src/hg/utils/bigGenePredToGenePred/tests/input/hg38.sizes
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    ab38adb3e68ab9cf4c53d9b0df0ebf46f51ca999 Fri Sep 4 11:31:15 2020 -0700
    added bigGenePredToGenePred command
• src/hg/utils/bigGenePredToGenePred/tests/makefile
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    ab38adb3e68ab9cf4c53d9b0df0ebf46f51ca999 Fri Sep 4 11:31:15 2020 -0700
    added bigGenePredToGenePred command
• src/hg/utils/makefile
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    ab38adb3e68ab9cf4c53d9b0df0ebf46f51ca999 Fri Sep 4 11:31:15 2020 -0700
    added bigGenePredToGenePred command
• src/inc/bigBed.h
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    b5d34fef6610916dc89c85f83c0e1f719f6969c3 Mon Aug 31 20:13:15 2020 -0700
    Add support for mouseOver (pattern) trackDb setting (initially to bigLolly). refs #26160
• src/inc/common.mk
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    7216fbf3ffc72cb77bf509c0bffe719a1daa0ed5 Sun Sep 6 16:20:34 2020 -0700
    first cut at using FreeType for font support
• src/inc/memgfx.h
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    7216fbf3ffc72cb77bf509c0bffe719a1daa0ed5 Sun Sep 6 16:20:34 2020 -0700
    first cut at using FreeType for font support
• src/inc/vGfx.h
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    7216fbf3ffc72cb77bf509c0bffe719a1daa0ed5 Sun Sep 6 16:20:34 2020 -0700
    first cut at using FreeType for font support
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    63e877721218447e17583d33ae51f1d002b252a8 Sun Sep 6 16:33:17 2020 -0700
    oops typo
• src/lib/bigBed.c
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    b5d34fef6610916dc89c85f83c0e1f719f6969c3 Mon Aug 31 20:13:15 2020 -0700
    Add support for mouseOver (pattern) trackDb setting (initially to bigLolly). refs #26160
• src/lib/freeType.c
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    7216fbf3ffc72cb77bf509c0bffe719a1daa0ed5 Sun Sep 6 16:20:34 2020 -0700
    first cut at using FreeType for font support
• src/lib/freeType.h
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    7216fbf3ffc72cb77bf509c0bffe719a1daa0ed5 Sun Sep 6 16:20:34 2020 -0700
    first cut at using FreeType for font support
• src/lib/makefile
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    7216fbf3ffc72cb77bf509c0bffe719a1daa0ed5 Sun Sep 6 16:20:34 2020 -0700
    first cut at using FreeType for font support
• src/lib/memgfx.c
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    7216fbf3ffc72cb77bf509c0bffe719a1daa0ed5 Sun Sep 6 16:20:34 2020 -0700
    first cut at using FreeType for font support
• src/lib/net.c
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    22d2b680a73ee00f4c37917f6e16ead11db556ef Tue Sep 1 02:04:38 2020 -0700
    Adding support for relative URL in redirect location in net.c and udc.c. refs#26138
• src/lib/udc.c
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    22d2b680a73ee00f4c37917f6e16ead11db556ef Tue Sep 1 02:04:38 2020 -0700
    Adding support for relative URL in redirect location in net.c and udc.c. refs#26138
• src/lib/vGfxPrivate.h
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    7216fbf3ffc72cb77bf509c0bffe719a1daa0ed5 Sun Sep 6 16:20:34 2020 -0700
    first cut at using FreeType for font support
• src/utils/qa/weeklybld/buildEnv.csh
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    d069a07cb622f190446a9a683f5ae9400198a756 Mon Sep 7 10:01:06 2020 -0700
    v404 preview2

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