File Changes for hiram

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v410_preview2 to v410_base (2021-02-01 to 2021-02-08) v410

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src/hg/hgGateway/hgGateway.c
- lines changed 1, context: html, text, full: html, text
  ac0ae4405481be61afc8f6e74d67aeac6b6f0e64 Tue Feb 2 11:07:48 2021 -0800
  fix SQL query missing closing paren refs #26893 #24074
src/hg/hubApi/hubApi.c
- lines changed 1, context: html, text, full: html, text
  e8d55d40ff0495dd97941c256f810b6505955e7e Wed Feb 3 21:53:39 2021 -0800
  the Plants hub is obsolete for a default now using Synonymous Constraint no redmine
src/hg/js/hgTracks.js
- lines changed 3, context: html, text, full: html, text
  9cb1c014fe8ede37d3bf519a62746731b44c7bc5 Tue Feb 2 07:06:05 2021 -0800
  style update code review refs #26904
src/hg/makeDb/doc/asmHubs/hubIndex.pl
- lines changed 210, context: html, text, full: html, text
  13ca91a9d4a1ed3169fb78c4f39be9cbe5eb4869 Tue Feb 2 14:48:17 2021 -0800
  scripts used on hgdownload to construct text list of hubs and top level index.html page refs #23891
src/hg/makeDb/doc/asmHubs/hubList.sh
- lines changed 46, context: html, text, full: html, text
  13ca91a9d4a1ed3169fb78c4f39be9cbe5eb4869 Tue Feb 2 14:48:17 2021 -0800
  scripts used on hgdownload to construct text list of hubs and top level index.html page refs #23891
src/hg/makeDb/doc/asmHubs/master.run.list
- lines changed 35, context: html, text, full: html, text
  6b96e53a208eaadaf940e392a5decc7f83a1e859 Tue Feb 2 13:25:01 2021 -0800
  catching up recently finished assembly hub builds and uniq common names refs #23891
- lines changed 1, context: html, text, full: html, text
  1c60aec14fd14f3594fbbfe765f3594223e36f25 Tue Feb 2 14:54:28 2021 -0800
  adding the troublesome primate assembly refs #23891
src/hg/makeDb/doc/asmHubs/mkGenomes.pl
- lines changed 4, context: html, text, full: html, text
  6f3824a64a095636d23b144a7536a1f5a8779f07 Tue Feb 2 14:54:54 2021 -0800
  better error exit on broken orderList refs #23891
src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
- lines changed 18, context: html, text, full: html, text
  6b96e53a208eaadaf940e392a5decc7f83a1e859 Tue Feb 2 13:25:01 2021 -0800
  catching up recently finished assembly hub builds and uniq common names refs #23891
- lines changed 1, context: html, text, full: html, text
  e204336831dd2fccd93b1aabc4d647c933ba8dbc Tue Feb 2 14:53:39 2021 -0800
  fixup a couple names refs #23891
src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
- lines changed 34, context: html, text, full: html, text
  6b96e53a208eaadaf940e392a5decc7f83a1e859 Tue Feb 2 13:25:01 2021 -0800
  catching up recently finished assembly hub builds and uniq common names refs #23891
src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
- lines changed 6, context: html, text, full: html, text
  6b96e53a208eaadaf940e392a5decc7f83a1e859 Tue Feb 2 13:25:01 2021 -0800
  catching up recently finished assembly hub builds and uniq common names refs #23891
- lines changed 0, context: html, text, full: html, text
  e204336831dd2fccd93b1aabc4d647c933ba8dbc Tue Feb 2 14:53:39 2021 -0800
  fixup a couple names refs #23891
src/hg/makeDb/doc/mm39/lastzRuns.txt
- lines changed 1592, context: html, text, full: html, text
  d42b1cf12daaba8db0c8faa736548d6d1edb0f30 Fri Feb 5 13:21:16 2021 -0800
  adding make doc for the runs that were all automatic refs #26815
src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
- lines changed 2, context: html, text, full: html, text
  6b96e53a208eaadaf940e392a5decc7f83a1e859 Tue Feb 2 13:25:01 2021 -0800
  catching up recently finished assembly hub builds and uniq common names refs #23891
- lines changed 2, context: html, text, full: html, text
  e204336831dd2fccd93b1aabc4d647c933ba8dbc Tue Feb 2 14:53:39 2021 -0800
  fixup a couple names refs #23891
src/hg/makeDb/doc/rn7/initialBuild.txt
- lines changed 1256, context: html, text, full: html, text
  102685aae3c6965281c5de9b14337f73995c204f Wed Feb 3 16:59:19 2021 -0800
  running repeat masker and simple repeats refs #26682
src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
- lines changed 14, context: html, text, full: html, text
  6b96e53a208eaadaf940e392a5decc7f83a1e859 Tue Feb 2 13:25:01 2021 -0800
  catching up recently finished assembly hub builds and uniq common names refs #23891
src/hg/makeDb/genbank/etc/align.dbs
- lines changed 1, context: html, text, full: html, text
  8227afe8706dad285f0bcef3213f8e4643f899d4 Thu Feb 4 09:44:06 2021 -0800
  Added rn7 - rat refs #26682
src/hg/makeDb/genbank/etc/genbank.conf
- lines changed 18, context: html, text, full: html, text
  e26e5b3e3ef27f2cdab7877d465e50b73f25508c Thu Feb 4 09:42:23 2021 -0800
  Added rn7 rat refs #26682
src/hg/makeDb/genbank/etc/hgwdev.dbs
- lines changed 4, context: html, text, full: html, text
  8227afe8706dad285f0bcef3213f8e4643f899d4 Thu Feb 4 09:44:06 2021 -0800
  Added rn7 - rat refs #26682
src/hg/makeDb/schema/all.joiner
- lines changed 7, context: html, text, full: html, text
  78173ba6a8a9e90fda4863cdf2712708ca7d7ea3 Thu Feb 4 10:53:09 2021 -0800
  adding rules for rn7 refs #26682
src/hg/makeDb/trackDb/human/cloneEnd.trackDb.ra
- lines changed 48, context: html, text, full: html, text
  e9ce87fb66d90958cbbdfdbec1a1a3c4556f0239 Thu Feb 4 09:58:23 2021 -0800
  NCBI ClonDB url is obsolete refs #21948
src/hg/makeDb/trackDb/makefile
- lines changed 1, context: html, text, full: html, text
  fc0e57ce770bea86faa7e4f6b4c83197d335257b Wed Feb 3 16:25:45 2021 -0800
  initial files for rn7 refs #26682
src/hg/makeDb/trackDb/mouse/cloneEnd.trackDb.ra
- lines changed 26, context: html, text, full: html, text
  e9ce87fb66d90958cbbdfdbec1a1a3c4556f0239 Thu Feb 4 09:58:23 2021 -0800
  NCBI ClonDB url is obsolete refs #21948
src/hg/makeDb/trackDb/rat/rn6/cloneEnd.trackDb.ra
- lines changed 12, context: html, text, full: html, text
  e9ce87fb66d90958cbbdfdbec1a1a3c4556f0239 Thu Feb 4 09:58:23 2021 -0800
  NCBI ClonDB url is obsolete refs #21948
src/hg/makeDb/trackDb/rat/rn7/description.html
- lines changed 64, context: html, text, full: html, text
  fc0e57ce770bea86faa7e4f6b4c83197d335257b Wed Feb 3 16:25:45 2021 -0800
  initial files for rn7 refs #26682
src/hg/makeDb/trackDb/rat/rn7/gap.html
- lines changed 30, context: html, text, full: html, text
  fc0e57ce770bea86faa7e4f6b4c83197d335257b Wed Feb 3 16:25:45 2021 -0800
  initial files for rn7 refs #26682
src/hg/makeDb/trackDb/rat/rn7/gold.html
- lines changed 34, context: html, text, full: html, text
  fc0e57ce770bea86faa7e4f6b4c83197d335257b Wed Feb 3 16:25:45 2021 -0800
  initial files for rn7 refs #26682
src/hg/makeDb/trackDb/rat/rn7/trackDb.ra
- lines changed 8, context: html, text, full: html, text
  fc0e57ce770bea86faa7e4f6b4c83197d335257b Wed Feb 3 16:25:45 2021 -0800
  initial files for rn7 refs #26682
- lines changed 6, context: html, text, full: html, text
  9cc7ce1af6119158545ad718793c5066ee69249c Wed Feb 3 16:35:45 2021 -0800
  adding search rule for gold/assembly track refs #26682
- lines changed 1, context: html, text, full: html, text
  476457cc05d68579e4502302dd731225d068b7d2 Thu Feb 4 10:37:16 2021 -0800
  addin NCBI RefSeq composite track refs #26682
src/hg/utils/automation/asmHubChainNetTrackDb.sh
- lines changed 178, context: html, text, full: html, text
  7c10410f740fc07c6ee0a49cdad69fca9b3cdbaf Fri Feb 5 15:21:49 2021 -0800
  beginning to add chainNet tracks to assembly hubs refs #26815

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