File Changes for hiram

switch to commits view, user index

v444_preview to v444_preview2 (2023-02-06 to 2023-02-13) v444

Show details

src/hg/hubApi/tests/expected/list03.gz
- lines changed 0, context: html, text, full: html, text
  8f64dc6018ec35583b8f807758e0fb12d8d45e9c Tue Feb 7 11:56:45 2023 -0800
  updated expected test output to reflect today contents of tables on hgwdev no redmine
- lines changed 0, context: html, text, full: html, text
  a9667a778e3a95abce27ccc2b0c8d84f4bf3da8a Tue Feb 7 12:45:04 2023 -0800
  trackDb updates affect the results of tests, make sure up to date no redmine
src/hg/hubApi/tests/expected/list09.gz
- lines changed 0, context: html, text, full: html, text
  8f64dc6018ec35583b8f807758e0fb12d8d45e9c Tue Feb 7 11:56:45 2023 -0800
  updated expected test output to reflect today contents of tables on hgwdev no redmine
- lines changed 0, context: html, text, full: html, text
  a9667a778e3a95abce27ccc2b0c8d84f4bf3da8a Tue Feb 7 12:45:04 2023 -0800
  trackDb updates affect the results of tests, make sure up to date no redmine
src/hg/hubApi/tests/expected/notSup02.gz
- lines changed 0, context: html, text, full: html, text
  a0e18d1f64aa38a4d79895ddf426838ec139637a Tue Feb 7 12:58:57 2023 -0800
  use a local vcfTabix track to test not supported no redmine
src/hg/hubApi/tests/expected/schema06.gz
- lines changed 0, context: html, text, full: html, text
  e7071512b2fa2f30e99a5b47f32f30cbda67a4fe Tue Feb 7 12:02:48 2023 -0800
  updated expected test output to reflect today contents of tables on hgwdev no redmine
- lines changed 0, context: html, text, full: html, text
  a9667a778e3a95abce27ccc2b0c8d84f4bf3da8a Tue Feb 7 12:45:04 2023 -0800
  trackDb updates affect the results of tests, make sure up to date no redmine
src/hg/hubApi/tests/expected/schema10.gz
- lines changed 0, context: html, text, full: html, text
  e7071512b2fa2f30e99a5b47f32f30cbda67a4fe Tue Feb 7 12:02:48 2023 -0800
  updated expected test output to reflect today contents of tables on hgwdev no redmine
- lines changed 0, context: html, text, full: html, text
  a9667a778e3a95abce27ccc2b0c8d84f4bf3da8a Tue Feb 7 12:45:04 2023 -0800
  trackDb updates affect the results of tests, make sure up to date no redmine
src/hg/hubApi/tests/expected/test0.gz
- lines changed 0, context: html, text, full: html, text
  8f64dc6018ec35583b8f807758e0fb12d8d45e9c Tue Feb 7 11:56:45 2023 -0800
  updated expected test output to reflect today contents of tables on hgwdev no redmine
src/hg/hubApi/tests/expected/test41.gz
- lines changed 0, context: html, text, full: html, text
  8f64dc6018ec35583b8f807758e0fb12d8d45e9c Tue Feb 7 11:56:45 2023 -0800
  updated expected test output to reflect today contents of tables on hgwdev no redmine
- lines changed 0, context: html, text, full: html, text
  a9667a778e3a95abce27ccc2b0c8d84f4bf3da8a Tue Feb 7 12:45:04 2023 -0800
  trackDb updates affect the results of tests, make sure up to date no redmine
src/hg/hubApi/tests/jsonConsumer.pl
- lines changed 3, context: html, text, full: html, text
  4a3f103195afff216604e84a30fc1d1ed4e0cf82 Tue Feb 7 12:13:35 2023 -0800
  indicate comments which server is which CGI no redmine
src/hg/hubApi/tests/makefile
- lines changed 2, context: html, text, full: html, text
  1744d98b15270fdbeb3abf81ee065ddfbd20f884 Tue Feb 7 12:59:12 2023 -0800
  use a local vcfTabix track to test not supported no redmine
src/hg/inc/asmEquivalent.h
- lines changed 103, context: html, text, full: html, text
  4418dae2476e397d9c03c1301e573e2c45b1a58e Fri Feb 10 12:16:43 2023 -0800
  adding asmEquivalent functions to this library no redmine
src/hg/lib/asmEquivalent.c
- lines changed 53, context: html, text, full: html, text
  4418dae2476e397d9c03c1301e573e2c45b1a58e Fri Feb 10 12:16:43 2023 -0800
  adding asmEquivalent functions to this library no redmine
src/hg/lib/asmEquivalent.h
- lines changed 101, context: html, text, full: html, text
  cf9bdd51cff9f2d4c01f8041e4c0c4708887571b Fri Feb 10 12:18:15 2023 -0800
  moved asmEquivalent.h to ../inc where it belongs no redmine
src/hg/lib/hdb.c
- lines changed 5, context: html, text, full: html, text
  67a193695c84dcb0508c79bdc7f8549471e9c5a7 Fri Feb 10 12:50:06 2023 -0800
  using the asmEquivalent hgFixed table to get an assembly name for the GDV browser will also need to translate the chromsome name to get this to work no redmine
src/hg/lib/makefile
- lines changed 2, context: html, text, full: html, text
  4418dae2476e397d9c03c1301e573e2c45b1a58e Fri Feb 10 12:16:43 2023 -0800
  adding asmEquivalent functions to this library no redmine
src/hg/makeDb/doc/asmHubs/master.run.list
- lines changed 1, context: html, text, full: html, text
  129709f4ebba14b4ed271d9ee0c71b250e38294d Mon Feb 6 15:04:25 2023 -0800
  adding GCF_900747795.2_fErpCal1.3 reedfish/Erpetoichthys_calabaricus to catch up for VGP no redmine
- lines changed 1, context: html, text, full: html, text
  91c4d455cc5c40ca17b08695bcb9ed887c8374f7 Wed Feb 8 10:15:35 2023 -0800
  adding GCA_902829235.1_CLODIP2 mayflies C.dipterum (2020) per user request refs #29545
- lines changed 7, context: html, text, full: html, text
  7651f710438202bebb335bd06d5a5809f254ddd2 Wed Feb 8 16:52:08 2023 -0800
  adding four new VGP assemblies to catch up no redmine
- lines changed 3, context: html, text, full: html, text
  e71cff44c70dc01dda7236b4d6696320c4e0e379 Fri Feb 10 08:20:38 2023 -0800
  adding two per user request refs #29545
src/hg/makeDb/doc/asmHubs/mkHubIndex.pl
- lines changed 5, context: html, text, full: html, text
  8c39e9cdaef1aae3e50691b4452a118a8ddb4fd8 Mon Feb 6 14:48:14 2023 -0800
  error out when clade definition is missing no redmine
src/hg/makeDb/doc/asmHubs/mkSymLinks.pl
- lines changed 10, context: html, text, full: html, text
  f8c99a35bd085c9ec73b730a382129fee2183570 Mon Feb 6 14:47:27 2023 -0800
  add in the repeatModeler download files no redmine
src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  7651f710438202bebb335bd06d5a5809f254ddd2 Wed Feb 8 16:52:08 2023 -0800
  adding four new VGP assemblies to catch up no redmine
src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  7651f710438202bebb335bd06d5a5809f254ddd2 Wed Feb 8 16:52:08 2023 -0800
  adding four new VGP assemblies to catch up no redmine
- lines changed 2, context: html, text, full: html, text
  e71cff44c70dc01dda7236b4d6696320c4e0e379 Fri Feb 10 08:20:38 2023 -0800
  adding two per user request refs #29545
src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv
- lines changed 2, context: html, text, full: html, text
  e71cff44c70dc01dda7236b4d6696320c4e0e379 Fri Feb 10 08:20:38 2023 -0800
  adding two per user request refs #29545
src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  91c4d455cc5c40ca17b08695bcb9ed887c8374f7 Wed Feb 8 10:15:35 2023 -0800
  adding GCA_902829235.1_CLODIP2 mayflies C.dipterum (2020) per user request refs #29545
src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt
- lines changed 4, context: html, text, full: html, text
  a34d583ea0c3e75e865ed31d8f32133c8f945383 Wed Feb 8 11:00:22 2023 -0800
  catch up for some missed completed builds no redmine
src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  631b1158bd10f31933723570979fa8aec1de321d Mon Feb 6 15:26:37 2023 -0800
  updated assembly for reedfish GCF_900747795.1_fErpCal1.1 no redmine
- lines changed 5, context: html, text, full: html, text
  a34d583ea0c3e75e865ed31d8f32133c8f945383 Wed Feb 8 11:00:22 2023 -0800
  catch up for some missed completed builds no redmine
- lines changed 3, context: html, text, full: html, text
  7651f710438202bebb335bd06d5a5809f254ddd2 Wed Feb 8 16:52:08 2023 -0800
  adding four new VGP assemblies to catch up no redmine
- lines changed 1, context: html, text, full: html, text
  e71cff44c70dc01dda7236b4d6696320c4e0e379 Fri Feb 10 08:20:38 2023 -0800
  adding two per user request refs #29545
src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  a34d583ea0c3e75e865ed31d8f32133c8f945383 Wed Feb 8 11:00:22 2023 -0800
  catch up for some missed completed builds no redmine
- lines changed 1, context: html, text, full: html, text
  7651f710438202bebb335bd06d5a5809f254ddd2 Wed Feb 8 16:52:08 2023 -0800
  adding four new VGP assemblies to catch up no redmine
src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  129709f4ebba14b4ed271d9ee0c71b250e38294d Mon Feb 6 15:04:25 2023 -0800
  adding GCF_900747795.2_fErpCal1.3 reedfish/Erpetoichthys_calabaricus to catch up for VGP no redmine
- lines changed 2, context: html, text, full: html, text
  7651f710438202bebb335bd06d5a5809f254ddd2 Wed Feb 8 16:52:08 2023 -0800
  adding four new VGP assemblies to catch up no redmine
src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv
- lines changed 3, context: html, text, full: html, text
  7651f710438202bebb335bd06d5a5809f254ddd2 Wed Feb 8 16:52:08 2023 -0800
  adding four new VGP assemblies to catch up no redmine
src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  64d447ba2e30d43e88dfdf32ee98ff045888ee60 Mon Feb 6 15:39:50 2023 -0800
  GCA_004115265.2 replaced by GCF_004115265.2 no redmine;
- lines changed 4, context: html, text, full: html, text
  7651f710438202bebb335bd06d5a5809f254ddd2 Wed Feb 8 16:52:08 2023 -0800
  adding four new VGP assemblies to catch up no redmine
src/hg/makeDb/trackDb/human/chainNetPlacental.ra
- lines changed 29, context: html, text, full: html, text
  253725f97da38e647a3f7ac58043a0022b1c4847 Thu Feb 9 15:00:07 2023 -0800
  bring in Asiatic elephant, domestic cat, and platypus GenArk hub chain tracks into composite refs #30555
src/hg/makeDb/trackDb/human/chainNetVertebrate.ra
- lines changed 25, context: html, text, full: html, text
  253725f97da38e647a3f7ac58043a0022b1c4847 Thu Feb 9 15:00:07 2023 -0800
  bring in Asiatic elephant, domestic cat, and platypus GenArk hub chain tracks into composite refs #30555
src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
- lines changed 206, context: html, text, full: html, text
  6a173139cd987a0438b9798b902e0f4ba5006062 Thu Feb 9 14:23:02 2023 -0800
  adding chainNet definitions for GCF_024166365.1 GCF_018350175.1 GCF_004115215.2 per user request refs #30555
src/hg/utils/otto/grcIncident/runUpdate.sh
- lines changed 8, context: html, text, full: html, text
  267f04e1dd82e71c871c9dfb465e2d3b1aa5617e Fri Feb 10 09:53:48 2023 -0800
  add a bit more output in the failing case to help identify it and update GRCh38 to patch 14 no redmine

switch to commits view, user index