Commits for hiram

eb19eff7d841ca40ae2f574641f8a61178fcfc5a Mon Mar 27 11:57:58 2023 -0700

the thead elements can be sticky so they always are visible refs #30508
- src/hg/makeDb/doc/asmHubs/mkAsmStats.pl - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/doc/asmHubs/mkHubIndex.pl - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/doc/asmHubs/trackData.pl - lines changed 1, context: html, text, full: html, text

ada1ddb2e10cba1905097ec4b52496c4d6dc21b9 Mon Mar 27 12:42:46 2023 -0700

HPRC almost done refs #30508
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 5, context: html, text, full: html, text

3ec2e23a21596e32f496a4725c2f62fcfa06c9c5 Mon Mar 27 12:59:52 2023 -0700

HPRC almost done refs #30508
- src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 31, context: html, text, full: html, text

07f3abdafbcc6ddc16923543827fe2cff304cb92 Mon Mar 27 13:01:43 2023 -0700

HPRC almost done refs #30508
- src/hg/makeDb/doc/hprcAsmHub/hprc.orderList.tsv - lines changed 5, context: html, text, full: html, text

595d44078d99eb1f717f097e2e4c886c450b2fe1 Tue Mar 28 12:19:29 2023 -0700

adding download links on the gene track description pages for the GTF file no redmine
- src/hg/utils/automation/AsmHub.pm - lines changed 12, context: html, text, full: html, text
- src/hg/utils/automation/asmHubAugustusGene.pl - lines changed 9, context: html, text, full: html, text
- src/hg/utils/automation/asmHubNcbiRefSeq.pl - lines changed 26, context: html, text, full: html, text
- src/hg/utils/automation/asmHubXenoRefGene.pl - lines changed 20, context: html, text, full: html, text

ae2dd63fb1a1921a7ad835eb5d5cf669ba900f5a Wed Mar 29 11:19:46 2023 -0700

nearing end game for HPRC and a user request refs #30508
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 12, context: html, text, full: html, text

e2c655ad9c801455a788529461d13f8faea0a29d Wed Mar 29 11:26:20 2023 -0700

nearing end game for HPRC refs #30508
- src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 13, context: html, text, full: html, text

2be741b9b6d20b96b95fcf43a958f55c4dea7acc Wed Mar 29 11:29:28 2023 -0700

nearing end game for HPRC refs #30508
- src/hg/makeDb/doc/hprcAsmHub/hprc.orderList.tsv - lines changed 11, context: html, text, full: html, text

9aaf8df1f904ec62eceae14d5434f0d7b8ca4c2f Wed Mar 29 13:45:43 2023 -0700

add 4 per user request refs #29545
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 4, context: html, text, full: html, text

c2613e3ae4bd2d87e4636f0f8f2fd7edade5f567 Wed Mar 29 15:45:48 2023 -0700

adding assemblies requested by users refs #29545
- src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 7, context: html, text, full: html, text

d6c7fa4c35cbcbdaea914d8658b04d752348da80 Thu Mar 30 10:28:16 2023 -0700

only one left to go refs #30508
- src/hg/makeDb/doc/hprcAsmHub/hprc.orderList.tsv - lines changed 30, context: html, text, full: html, text

c571219d92855a102ea156d7256a288750fcb147 Thu Mar 30 19:25:44 2023 -0700

completed HPRC building refs #30508
- src/hg/makeDb/doc/hprcAsmHub/hprc.orderList.tsv - lines changed 1, context: html, text, full: html, text

b20f086704c8878dddc4411af2b22ef21edf7c50 Thu Mar 30 19:36:44 2023 -0700

correct title on the hub refs #30508
- src/hg/makeDb/doc/hprcAsmHub/hub.txt - lines changed 3, context: html, text, full: html, text

50871bdc58d90912e30fdb66e2523de383ada100 Sat Apr 1 19:07:44 2023 -0700

record of lastz runs HPRC genomes to hg38 refs #30508
- src/hg/makeDb/doc/hg38/hprcLastz.txt - lines changed 417, context: html, text, full: html, text

7c0c6f08b3e53af0c02ec2f198ef1592584dccd9 Sat Apr 1 19:18:30 2023 -0700

correctly remove rmsk.customLib.fa.gz link refs #30508
- src/hg/utils/automation/asmHubTrackDb.sh - lines changed 1, context: html, text, full: html, text

166f7ceea61ae6355730d52f2ab9edf5b3542103 Sun Apr 2 14:50:37 2023 -0700

record of lastz runs HPRC genomes to hg38 refs #30508
- src/hg/makeDb/doc/hg38/hprcLastz.txt - lines changed 320, context: html, text, full: html, text

469854e0db669fea70d5cea72340c4b5ef4c232e Sun Apr 2 21:08:37 2023 -0700

up to date with all HPRC assemblies refs #30508
- src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 30, context: html, text, full: html, text

54bfa01a40eae2477526f01136b15e3cc757126b Sun Apr 2 21:56:49 2023 -0700

starting the taxId class list for CCGP assemblies refs #30912
- src/hg/makeDb/doc/ccgpAsmHub/ccgp.taxId.asmId.class.txt - lines changed 123, context: html, text, full: html, text

2cd36bf868d2c1dd42dd452f9b9724edd4ee67e9 Sun Apr 2 22:11:13 2023 -0700

25 CCGP assemblies done refs #30912
- src/hg/makeDb/doc/ccgpAsmHub/ccgp.orderList.tsv - lines changed 24, context: html, text, full: html, text

0cdd9c7fee07aa3d5ef9f4a7dd9e3146f52421c3 Sun Apr 2 22:30:18 2023 -0700

adding CCGP logo image refs #30912
- src/hg/makeDb/doc/ccgpAsmHub/CCGP_logo.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

47fa2308b393f3d1eea2310c58cdc46090356a62 Sun Apr 2 22:35:22 2023 -0700

adding custom index page code for CCGP collection refs #30912
- src/hg/makeDb/doc/asmHubs/mkHubIndex.pl - lines changed 48, context: html, text, full: html, text