Commits for hiram

v460_base to v461_preview (2024-01-29 to 2024-02-06) v461

bcbf2dfc5f3cfe6c33b1cf8b630bfb11806e4dc3 Mon Jan 29 16:47:04 2024 -0800

• crispr track build refs #32827
  • src/hg/makeDb/doc/hs1/crispr.txt - lines changed 43, context: html, text, full: html, text

830e8a9193ae7906770c396cee7e58b2b14dfdda Wed Jan 31 13:43:17 2024 -0800

• update to publication reference no redmine
  • src/hg/utils/automation/asmHubTOGA.pl - lines changed 6, context: html, text, full: html, text

4ba0a7d92cc93673915bb6f24ae81435ea179ce3 Wed Jan 31 17:02:58 2024 -0800

• beginning to add a searchable table of genome meta data refs #23589;
  • src/hg/inc/genomeData.h - lines changed 117, context: html, text, full: html, text
  • src/hg/lib/genomeData.as - lines changed 41, context: html, text, full: html, text
  • src/hg/lib/genomeData.c - lines changed 856, context: html, text, full: html, text
  • src/hg/lib/genomeData.sql - lines changed 47, context: html, text, full: html, text

0bc6be88baf4061ca10c6f207331ec04e36c17f1 Fri Feb 2 11:34:37 2024 -0800

• better name for this table refs #23589
  • src/hg/inc/asmSummary.h - lines changed 117, context: html, text, full: html, text
  • src/hg/lib/asmSummary.as - lines changed 41, context: html, text, full: html, text
  • src/hg/lib/asmSummary.c - lines changed 844, context: html, text, full: html, text
  • src/hg/lib/asmSummary.sql - lines changed 47, context: html, text, full: html, text

c8f3ff3c555def2c55f0c498fe0eb24df8c29b6c Fri Feb 2 11:35:26 2024 -0800

• name changed to asmSummary refs #23589
  • src/hg/inc/genomeData.h - lines changed 117, context: html, text, full: html, text
  • src/hg/lib/genomeData.as - lines changed 41, context: html, text, full: html, text
  • src/hg/lib/genomeData.c - lines changed 856, context: html, text, full: html, text
  • src/hg/lib/genomeData.sql - lines changed 47, context: html, text, full: html, text

be00edb2a6ef8c715b715cf0261572feead28c21 Sat Feb 3 13:11:41 2024 -0800

• beginning to run FULLTEXT search on asmSummary table refs #23589
  • src/hg/hubApi/dataApi.h - lines changed 8, context: html, text, full: html, text
  • src/hg/hubApi/findGenome.c - lines changed 199, context: html, text, full: html, text
  • src/hg/hubApi/hubApi.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/asmSummary.c - lines changed 14, context: html, text, full: html, text

623507d68d435e62ba460a992f6cb7b44280bb5c Sat Feb 3 13:16:03 2024 -0800

• beginning to run FULLTEXT search on asmSummary table refs #23589
  • src/hg/hubApi/makefile - lines changed 1, context: html, text, full: html, text

2d5c21f0d3a8b67dd86f1f9f999f2aa384f67275 Sat Feb 3 13:17:19 2024 -0800

• beginning to run FULLTEXT search on asmSummary table refs #23589
  • src/hg/inc/asmSummary.h - lines changed 7, context: html, text, full: html, text

814c4588a63f364744576bebd4e98cdff4ae860c Sat Feb 3 13:18:10 2024 -0800

• adding asmSummary functions refs #23589
  • src/hg/lib/makefile - lines changed 1, context: html, text, full: html, text

c88b8a093cac2bc72ca4b4e3ff1fc2d1aea17f55 Sat Feb 3 13:59:52 2024 -0800

• the NULL specification confused autoSql for numbers that should be zero refs #23589
  • src/hg/inc/asmSummary.h - lines changed 9, context: html, text, full: html, text
  • src/hg/lib/asmSummary.c - lines changed 155, context: html, text, full: html, text

fec4e5d98ee6a52aac4506f02dc28980f52c738f Sat Feb 3 16:29:45 2024 -0800

• beginning to combine the outputs from asmSummary and genark tables refs #23589
  • src/hg/hubApi/findGenome.c - lines changed 305, context: html, text, full: html, text

6b90bc1b27dafa410579a6cbb479cd4ab44403c8 Sun Feb 4 20:54:17 2024 -0800

• add stats output function and timing measure refs #32897
  • src/hg/hubApi/dataApi.h - lines changed 2, context: html, text, full: html, text
  • src/hg/hubApi/findGenome.c - lines changed 102, context: html, text, full: html, text
  • src/hg/hubApi/hubApi.c - lines changed 1, context: html, text, full: html, text

454f6d047a6d35baa30335cbe939c41b6df3865f Mon Feb 5 12:24:56 2024 -0800

• now honoring allowAll in single word searches refs #32897
  • src/hg/hubApi/findGenome.c - lines changed 65, context: html, text, full: html, text

8d9253332f172e52c7ecb7fbc6ecde2bad30561f Mon Feb 5 15:36:52 2024 -0800

• with browserUrl and finding equivalent asmSummary for UCSC dbDb browser refs #32897
  • src/hg/hubApi/findGenome.c - lines changed 93, context: html, text, full: html, text