Commits for gperez2

v472_base to v473_preview (2024-10-07 to 2024-10-14) v473

9b06248769177714d1104ed0a8915e3641bd38cd Wed Oct 9 15:00:21 2024 -0700

• Adding and updating the CADD 1.7 track wrangled by Jeltje, refs #33940
  • src/hg/makeDb/doc/hg19.txt - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/cadd.txt - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/cadd.ra - lines changed 99, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/caddSuper.html - lines changed 70, context: html, text, full: html, text

7766e881ce9fa7ece509263fd71ecf8459e8c4ac Wed Oct 9 16:12:57 2024 -0700

• Adding release tag for the CADD 1.7 track, refs #33940
  • src/hg/makeDb/trackDb/human/cadd.alpha.ra - lines changed 193, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/cadd.ra - lines changed 99, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 3, context: html, text, full: html, text

a4646d25fdd147ff2982abcc104ea9cb89ff12e0 Thu Oct 10 10:41:22 2024 -0700

• Making CADD 1.7 its own superTrack and changing the CADD superTrack name to 1.6. Originally had both in one superTrack but caused issues. Changed the caddSuper.html back to its previous 1.6 version and made a caddSuper1_7.html. Refs #33940
  • src/hg/makeDb/trackDb/human/cadd.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/cadd1_7.ra - lines changed 100, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/caddSuper.html - lines changed 70, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/caddSuper1_7.html - lines changed 194, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 3, context: html, text, full: html, text

1e45128f219d904e99ce298a19e1a43de8f2aa34 Fri Oct 11 12:19:07 2024 -0700

• Updating the text on hgCustom to be more clear on how to update the custom track data from a URL, refs #9452
  • src/hg/hgCustom/hgCustom.c - lines changed 1, context: html, text, full: html, text

8ff015c68ded2a52d8b09d7dff5197e949c43630 Fri Oct 11 14:27:29 2024 -0700

• Adding missing html page for the CADD 1.7 track and the mouseOverFunction noAverage setting, refs #33940
  • src/hg/makeDb/trackDb/human/cadd1_7.ra - lines changed 4, context: html, text, full: html, text

6f3b1f2f5fc0b7ce851ef203da26bb2236a6b83a Fri Oct 11 18:08:39 2024 -0700

• Announcing the release of the CADD 1.7 track, refs #33940
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/cadd1_7.ra - lines changed 4, context: html, text, full: html, text

9f34fe132f7d27aaceea910f96d3f9035b1a56e1 Fri Oct 11 20:21:00 2024 -0700

• Small grammar fix for the CADD 1.7 track announcement, refs #33940
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 1, context: html, text, full: html, text

d2661193cffea99200bdf3993b515e11a130bec0 Sun Oct 13 16:09:46 2024 -0700

• Adding GIAB difficult regions track to the problematic regions super track, refs #32715
  • src/hg/makeDb/trackDb/human/hg38/problematic.html - lines changed 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/problematic.ra - lines changed 45, context: html, text, full: html, text