Commits for gperez2

v481_base to v482_preview (2025-04-28 to 2025-05-05) v482

252a94aadebea2407b24f654d6fac89f4a6d205d Mon Apr 28 16:39:19 2025 -0700

• Adding a GFF3 format to BigGenePred link to hgCustom, refs #25155
  • src/hg/hgCustom/hgCustom.c - lines changed 1, context: html, text, full: html, text

4c11eb65296e0ced1b61b7b85de541b1b92a119b Tue Apr 29 17:12:55 2025 -0700

• Updating the makefile and adding gatewayTutorial.js for the Gateway interactive tutorial, refs #34938
  • src/hg/js/tutorials/gatewayTutorial.js - lines changed 19, context: html, text, full: html, text
  • src/hg/js/tutorials/makefile - lines changed 1, context: html, text, full: html, text

221c807e7b59d1a5cb7cd9105c923320e72346a0 Tue Apr 29 17:33:11 2025 -0700

• Updaing makefile to resolve merge conflict, refs #34938
  • src/hg/js/tutorials/makefile - lines changed 2, context: html, text, full: html, text

532489da40462ffa8bc5745555fbd837fb572aeb Tue Apr 29 17:40:46 2025 -0700

• Adding the gateway tutorial markdown and makefile, refs #34938
  • docs/gatewayTutorial.md - lines changed 297, context: html, text, full: html, text
  • docs/makefile - lines changed 2, context: html, text, full: html, text

da32b65ef5007d3f1fd49eef8e416083b54bf067 Wed Apr 30 10:15:17 2025 -0700

• Staging the new GRC Patches track on hgwbeta, refs #35326
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 2, context: html, text, full: html, text

d90ebafc3574dccc5db20b875c6ebf5cd193e616 Thu May 1 16:36:47 2025 -0700

• Adding the VISTA Enhancers 2025 update, refs #35531
  • src/hg/makeDb/doc/hg19.txt - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/vistaEnhancers.txt - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm10.txt - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm39/vistaEnhancers.txt - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/vistaEnhancersBb.html - lines changed 91, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/vistaEnhancersBb.html - lines changed 91, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/vistaEnhancersBb.html - lines changed 91, context: html, text, full: html, text

f323b98128fb8a8ee1b30690c99ac442ecb1a764 Fri May 2 12:22:27 2025 -0700

• Adding the mouseOverField setting to hg19/mm39/mm10 VISTA Enhancers update track, refs #35531
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra - lines changed 1, context: html, text, full: html, text

b55b285a7f27fec51ad23dca19b262efc0218a82 Fri May 2 16:21:12 2025 -0700

• Removing release tags for the GRC Patches track , refs #35326
  • src/hg/makeDb/trackDb/patchTracks.new.ra - lines changed 49, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/patchTracks.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 2, context: html, text, full: html, text

1f0b23fe45c8fd5c2a6e2416dbc864f8f6cbf9ab Sun May 4 22:13:34 2025 -0700

• Edits to hgGateway.c and hgGateway.js following Jairo's code review feedback, #35591
  • src/hg/hgGateway/hgGateway.c - lines changed 10, context: html, text, full: html, text
  • src/hg/js/hgGateway.js - lines changed 8, context: html, text, full: html, text

4ff3943d1a1e3a147b32bd72dcaec916c19a9815 Mon May 5 09:00:55 2025 -0700

• Adding the otto script for the VISTA Enhancers track, refs #35531
  • src/hg/utils/otto/vista/vistaOtto.sh - lines changed 70, context: html, text, full: html, text