Commits for jnavarr5

v488_base to v489_preview (2025-09-22 to 2025-09-29) v489

4d06b1e359477194ed8b3e50dfec23aa695396af Wed Sep 24 10:53:20 2025 -0700

• Commiting changes from the clinVarToBed utility that was running on /hive to the kent source tree, no Redmine
  • src/hg/utils/otto/clinvar/clinVarToBed - lines changed 5, context: html, text, full: html, text

f605a32582341e556d53451a4ccc5c63e75a8fc5 Wed Sep 24 15:56:30 2025 -0700

• Staging the CoLoRSdb announcement and fixing a merge conflict, refs #34120
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 29, context: html, text, full: html, text

46fb2ffff6cdf0a620ff9ab18fc86d0f7f1d7806 Wed Sep 24 17:30:46 2025 -0700

• Staging the CoLoRSdb track for hg38 and hs1, refs #34120
  • src/hg/makeDb/trackDb/human/colorsDb.html - lines changed 129, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/colorsDb.ra - lines changed 38, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/structuralVariants.html - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text

92289d88fce4aa4595b103e1422a8cc68f2c9225 Wed Sep 24 17:46:32 2025 -0700

• Adding an image for the CoLoRSdb track, refs #34120
  • src/hg/htdocs/images/newsArchImages/CoLoRSdb.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

630550c8e3eef4679f6cfb1e89af12c1a05875d5 Wed Sep 24 18:00:04 2025 -0700

• Adding an image to the news post. Fixing the g= parameter for the hs1 assembly, refs #34120
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 14, context: html, text, full: html, text

068dc3da618e5c90dc3380622faa7a8e83a89bcb Wed Sep 24 18:03:14 2025 -0700

• Adding a link to the indexNews page. Fixing the title of the post, refs #34120
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 13, context: html, text, full: html, text

c03ba0968b302fb6cf026140fe0d8816fda7f6a1 Thu Sep 25 13:57:37 2025 -0700

• Editing the long and short labels based on Anna's feedback, refs #34120
  • src/hg/makeDb/trackDb/human/colorsDb.ra - lines changed 5, context: html, text, full: html, text

a6e1b8d8399b6f62b8b02d4082437caeb452fa42 Thu Sep 25 15:38:08 2025 -0700

• Fixing typos and differences between the track description page and the mouseOver tooltip, refs #36405
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/decipher.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/decipherContainer.html - lines changed 7, context: html, text, full: html, text

13e0fcf19a6d71108ecb13289c09de4c1286780c Fri Sep 26 14:27:58 2025 -0700

• Fixing broken links reported by the student interns, refs #36072
  • src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html - lines changed 6, context: html, text, full: html, text