Commits for galt

v495_preview to v495_preview2 (2026-02-23 to 2026-03-02) v495

61dc7885a5f1001e2bc189501379088f2b53379d Mon Feb 23 15:42:36 2026 -0800

• fixes things found automated codereview. for bigBedCmdSupport lib moved slAddHead, removed stray debugmsg and fixed comment and added static keyword. fixed bigChainToChain chromFound = FALSE, removed stray test makefile, fixed existing typo "tines", and added a missing space after issing space before optionMultiVal(). refs #37146
  • src/hg/utils/bigChainToChain/bigChainToChain.c - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/bigGenePredToGenePred/bigGenePredToGenePred.c - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/bigMafToMaf/bigMafToMaf.c - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/bigPslToPsl/bigPslToPsl.c - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/chainToBigChain/tests/makefile.galt.save - lines changed 28, context: html, text, full: html, text
  • src/lib/bigBedCmdSupport.c - lines changed 6, context: html, text, full: html, text
  • src/utils/bigBedToBed/bigBedToBed.c - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/utils/bigWigToBedGraph/bigWigToBedGraph.c - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/utils/bigWigToWig/bigWigToWig.c - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/utils/wigToBigWig/tests/makefile - lines changed 1, context: html, text, full: html, text

492f14378114d5b9c65e36137ad953b631fd7572 Fri Feb 27 13:00:13 2026 -0800

• Fixes issue found while investigating user question about multi-region. Since brian added automatic filtering of the users last search, the gene reading routine in multi-region exon code also needs to support it, otherwise mysterious differences appear between EV and DV modes. The searched gene will appear in the output to the screen regardless of other settings for KG like geneset of sliceVariants checkbox. refs #37175
  • src/hg/hgTracks/hgTracks.c - lines changed 5, context: html, text, full: html, text