Commits for chmalee

v500_preview to v500_preview2 (2026-06-08 to 2026-06-15) v500

ecc2331000637cbc2523653642d926935b5b83fc Sat Jun 13 00:42:03 2026 -0700

• gnomAD v4.1.1 bigBed variant track for hg38, refs #37351 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
  • src/hg/makeDb/doc/hg38/gnomad.txt - lines changed 41, context: html, text, full: html, text
  • src/hg/makeDb/gnomad/gnomadVcfBedToBigBed - lines changed 124, context: html, text, full: html, text
  • src/hg/makeDb/scripts/gnomadV4.1.1/buildGnomadV4.1.1BigBed.sh - lines changed 233, context: html, text, full: html, text
  • src/hg/makeDb/scripts/gnomadV4.1.1/exomes.as - lines changed 35, context: html, text, full: html, text
  • src/hg/makeDb/scripts/gnomadV4.1.1/genomes.as - lines changed 35, context: html, text, full: html, text
  • src/hg/makeDb/scripts/gnomadV4.1.1/v4.1.1.vcfToBed.exomes.fieldList - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/scripts/gnomadV4.1.1/v4.1.1.vcfToBed.genomes.fieldList - lines changed 68, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomad.ra - lines changed 108, context: html, text, full: html, text

574399b4a7d8fc75c1745fa83564f547ddcb9e8c Sat Jun 13 00:43:54 2026 -0700

• gnomAD v4.1.1 gene constraint tracks for hg38, refs #37351 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
  • src/hg/makeDb/doc/hg38/gnomad.txt - lines changed 57, context: html, text, full: html, text
  • src/hg/makeDb/gnomad/combine.v4.1.1.awk - lines changed 117, context: html, text, full: html, text
  • src/hg/makeDb/gnomad/missenseMetrics.v4.1.1.as - lines changed 24, context: html, text, full: html, text
  • src/hg/makeDb/gnomad/pliMetrics.v4.1.1.as - lines changed 25, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomad.constraint.alpha.ra - lines changed 221, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomad.ra - lines changed 2, context: html, text, full: html, text

c7e37754a34c3a9406c4546225253d49b2cdf82f Sat Jun 13 01:00:41 2026 -0700

• Stage gnomad v4.1.1 bigBed as release alpha, refs #37351
  • src/hg/makeDb/trackDb/human/hg38/gnomad.ra - lines changed 3, context: html, text, full: html, text