Commits for chmalee

v479_preview to v479_preview2 (2025-03-03 to 2025-03-10) v479

69d620fa14cf647c4f2dc45f82aedba7f51c27cd Mon Mar 3 15:06:42 2025 -0800

• Allow hub tracks in hubApi /getData/track function, refs #34627
  • src/hg/hubApi/getData.c - lines changed 7, context: html, text, full: html, text

3a59bf47db3bd7a30bbc717c74c341055380c477 Mon Mar 3 15:17:47 2025 -0800

• Make track hubs on native databases (and hs1) work in download all data in window feature on hgTracks, refs #34627
  • src/hg/js/hgTracks.js - lines changed 6, context: html, text, full: html, text

42f9d011018e9b34cd8296ed8ebfb951465549c2 Mon Mar 3 15:49:39 2025 -0800

• Fix undecoration of genome names bug, no need to undecorate genome names when doing download data in window request, make hubApi catch if the genome= argument is an assembly hub and act correctly, refs #34627
  • src/hg/hubApi/hubApi.c - lines changed 13, context: html, text, full: html, text
  • src/hg/js/hgTracks.js - lines changed 1, context: html, text, full: html, text
  • src/hg/js/utils.js - lines changed 1, context: html, text, full: html, text

bbe2055111b0bababdc240a64233b994f6b5de91 Tue Mar 4 11:13:56 2025 -0800

• Bump up DataTables javascript library versions to fix layout bug when initializing a table but not displaying it yet, like we do in the hub upload tab on hgHubConnect, refs #31058
  • src/hg/hgHubConnect/trackHubWizard.c - lines changed 6, context: html, text, full: html, text
  • src/lib/htmshell.c - lines changed 3, context: html, text, full: html, text

eb1bae3e9dfdebcb95f621724dc5c08e7904e555 Wed Mar 5 10:05:48 2025 -0800

• Explicitly add the db= parameter to calls to navigateInPlace() to prevent weird to the user bugs when multiple tabs are open. This is just a quick fix to prevent unwanted behavior while we figure out the multiple tabs = can still be one hgsid problem, refs #35199
  • src/hg/js/hgTracks.js - lines changed 14, context: html, text, full: html, text

390ac49268af6881834e0b5eda1f7186814126cc Thu Mar 6 10:31:39 2025 -0800

• Check that subtracks have the same group setting as their parent track, refs #35078
  • src/hg/utils/hubCheck/hubCheck.c - lines changed 11, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/expected/badGroups.output.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/expected/goodGroups.output.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/expected/noCompositeGroup.output.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/input/badGroups.txt - lines changed 45, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/input/goodGroups.txt - lines changed 45, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/input/groupSpec.txt - lines changed 4, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/input/noCompositeGroup.txt - lines changed 42, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/makefile - lines changed 13, context: html, text, full: html, text