CVS changes by file
review to branch (2010-01-12 to 2010-01-19) v223
- src/hg/encode/DAFs/UMass5C.DAF
- 1.4 lines changed: 43, context: html, text, full: html, text
2nd cut of Dekker lab files
- src/hg/encode/DAFs/UMass5C.DDF
- 1.2 lines changed: 11, context: html, text, full: html, text
2nd cut of Dekker lab files
- src/hg/encode/DAFs/UwDnaseValid.daf
- 1.1 lines changed: 0, context: html, text, full: html, text
First cut DNAse validatation metadata files for UW
- src/hg/encode/DAFs/UwDnaseValid.ddf
- 1.1 lines changed: 0, context: html, text, full: html, text
First cut DNAse validatation metadata files for UW
- src/hg/encode/encodeValidate/config/cv.ra
- 1.197 lines changed: 9, context: html, text, full: html, text
BRF2 is no longer provisional
- 1.196 lines changed: 12, context: html, text, full: html, text
provisionally added BRF2 for Yale
- 1.195 lines changed: 10, context: html, text, full: html, text
add 1x25 readType and bow10 mapping method
- 1.194 lines changed: 8, context: html, text, full: html, text
Added TFIIIC antibody for Struhl
- 1.193 lines changed: 32, context: html, text, full: html, text
Added antibody, fixed antibody tags and spelled insulin correctly
- 1.192 lines changed: 6, context: html, text, full: html, text
add insertLength of 400
- 1.191 lines changed: 7, context: html, text, full: html, text
Finally got the proper description for Nrf1 antibody
- 1.190 lines changed: 10, context: html, text, full: html, text
Added insolin and forskolin treatments for Snyder
- 1.189 lines changed: 13, context: html, text, full: html, text
Fixed a number of problems with cut and pasted special chars (alpha,gamma,etc.)
- 1.188 lines changed: 28, context: html, text, full: html, text
Added 2 new cell lines for HudsonAlpha
- 1.187 lines changed: 12, context: html, text, full: html, text
Six cell lines from provisional to approved for Stam lab
- 1.186 lines changed: 60, context: html, text, full: html, text
Added 6 new antibodies for Snyder
- 1.185 lines changed: 1, context: html, text, full: html, text
How many changes is this going to take until it is correct?
- 1.184 lines changed: 5, context: html, text, full: html, text
add 1x75D
- 1.183 lines changed: 1, context: html, text, full: html, text
Nrf1 didn't have a type
- 1.182 lines changed: 9, context: html, text, full: html, text
Added Nrf1 as a provisional antibody so that Mike Wilson can get his data in before the freeze
- src/hg/encode/encodeValidate/config/pi.ra
- 1.10 lines changed: 1, context: html, text, full: html, text
Restore hyphen for now, for reporting use
- 1.9 lines changed: 1, context: html, text, full: html, text
Fix hyphen problem
- 1.8 lines changed: 1, context: html, text, full: html, text
Fix hyphen problem
- 1.7 lines changed: 2, context: html, text, full: html, text
Adjust Dekker lab entry
- src/hg/encode/encodeValidate/doEncodeValidate.pl
- 1.214 lines changed: 1, context: html, text, full: html, text
Added support for the phase variable
- src/hg/encode/hgEncodeSubmit/app/controllers/pipeline_controller.rb
- 1.96 lines changed: 1, context: html, text, full: html, text
removing status superseded
- src/hg/encode/hgEncodeSubmit/app/views/pipeline/new.rhtml
- 1.13 lines changed: 1, context: html, text, full: html, text
more deadline stuff - do not block out admins
- 1.12 lines changed: 16, context: html, text, full: html, text
temporary workaround for deadline handling - later do something more complete with freeze-date in yml file and handle security better in controller. we were limited by changes that did not require restarting the server
- src/hg/encode/hgEncodeSubmit/app/views/pipeline/show.rhtml
- 1.51 lines changed: 8, context: html, text, full: html, text
temporary workaround for deadline handling - later do something more complete with freeze-date in yml file and handle security better in controller. we were limited by changes that did not require restarting the server
- 1.50 lines changed: 14, context: html, text, full: html, text
fixing status to handle more post-"loaded" status values, i.e. to treat them as non-active
- 1.49 lines changed: 23, context: html, text, full: html, text
somebody wants showd_af and show_ddf even for loaded status
- src/hg/hgCustom/hgCustom.c
- 1.136 lines changed: 2, context: html, text, full: html, text
Added link to BAM format (thanks Ann).
- src/hg/hgTracks/bamTrack.c
- 1.24 lines changed: 18, context: html, text, full: html, text
Moving cartOrTdbClosest to library as cartOrTdbString. Making bigBed pay attention to scoreFilter in case where not using linked features.
- src/hg/hgTracks/bedTrack.c
- 1.23 lines changed: 8, context: html, text, full: html, text
Making bigBed code in dense mode bypass the fast summary based method if a score filter is on.
- 1.22 lines changed: 5, context: html, text, full: html, text
Moving cartOrTdbClosest to library as cartOrTdbString. Making bigBed pay attention to scoreFilter in case where not using linked features.
- src/hg/hgTracks/bigBedTrack.c
- 1.2 lines changed: 11, context: html, text, full: html, text
Making bigBed code in dense mode bypass the fast summary based method if a score filter is on.
- src/hg/hgTracks/hgTracks.h
- 1.197 lines changed: 5, context: html, text, full: html, text
Making bigBed code in dense mode bypass the fast summary based method if a score filter is on.
- src/hg/hgTracks/simpleTracks.c
- 1.121 lines changed: 3, context: html, text, full: html, text
Making bigBed code in dense mode bypass the fast summary based method if a score filter is on.
- 1.120 lines changed: 2, context: html, text, full: html, text
Moving cartOrTdbClosest to library as cartOrTdbString. Making bigBed pay attention to scoreFilter in case where not using linked features.
- src/hg/hgc/hgc.c
- 1.1588 lines changed: 54, context: html, text, full: html, text
adding vega gene version identifier to those gene clicks
- 1.1587 lines changed: 4, context: html, text, full: html, text
Updated doTrnaGenesGb() per Lowe Lab input.
- src/hg/hgc/lowelab.c
- 1.42 lines changed: 3, context: html, text, full: html, text
add chrom to select tRNA
- src/hg/inc/cart.h
- 1.47 lines changed: 10, context: html, text, full: html, text
Adding cartOrTdbString and related functions.
- src/hg/inc/versionInfo.h
- 1.164 lines changed: 1, context: html, text, full: html, text
"New version number v223"
- src/hg/instinct/bioInt2/makeClusterFiles.c
- 1.6 lines changed: 9, context: html, text, full: html, text
Added some stuff dealing with pathways with no values, which was causing a seg fault
- src/hg/instinct/extractData/README
- src/hg/instinct/extractData/example.py
- src/hg/instinct/extractData/extractData.c
- 1.7 lines changed: 8, context: html, text, full: html, text
added python code
- 1.6 lines changed: 12, context: html, text, full: html, text
updated
- 1.5 lines changed: 188, context: html, text, full: html, text
updated
- 1.4 lines changed: 15, context: html, text, full: html, text
updated
- 1.3 lines changed: 21, context: html, text, full: html, text
updated
- 1.2 lines changed: 36, context: html, text, full: html, text
updated
- 1.1 lines changed: 169, context: html, text, full: html, text
initial commit
- src/hg/instinct/extractData/makefile
- src/hg/instinct/hgHeatmap2/hgHeatmapData/datasets.TCGAControlAnalysis.ra
- 1.1 lines changed: 0, context: html, text, full: html, text
add TCGA analysis track ra
- src/hg/instinct/hgHeatmap2/hgHeatmapData/datasets.TCGAPublicBrowser.ra
- 1.8 lines changed: 73, context: html, text, full: html, text
- 1.7 lines changed: 3, context: html, text, full: html, text
- 1.6 lines changed: 3, context: html, text, full: html, text
- 1.5 lines changed: 1, context: html, text, full: html, text
- 1.4 lines changed: 20, context: html, text, full: html, text
- 1.3 lines changed: 1, context: html, text, full: html, text
- 1.2 lines changed: 21, context: html, text, full: html, text
- src/hg/instinct/hgHeatmap2/hgHeatmapFrontend/index.html
- 1.36 lines changed: 1, context: html, text, full: html, text
Updated position box to accept return, also allow caps CHR and single chrom for jumping to the GB
- src/hg/instinct/hgHeatmap2/hgHeatmapFrontend/js/hgHeatmap.js
- 1.77 lines changed: 19, context: html, text, full: html, text
Updated position box to accept return, also allow caps CHR and single chrom for jumping to the GB
- src/hg/instinct/webUserAdmin/webUserAdmin.c
- 1.12 lines changed: 11, context: html, text, full: html, text
Added an error msg when the hg.conf variables aren't defined, also removed hard references to fan and instead pull from adminEmail
- src/hg/lib/cart.c
- 1.116 lines changed: 29, context: html, text, full: html, text
Adding cartOrTdbString and related functions.
- src/hg/makeDb/doc/ce6.txt
- 1.18 lines changed: 62, context: html, text, full: html, text
adding algBinding tracks
- src/hg/makeDb/doc/hg18.txt
- 1.394 lines changed: 132, context: html, text, full: html, text
Added NHGRI GWAS catalog track.
- src/hg/makeDb/doc/hg19.txt
- 1.71 lines changed: 21, context: html, text, full: html, text
vega Gene update done v36 for hg19 v37 for mm9
- src/hg/makeDb/doc/macEug1.txt
- 1.2 lines changed: 44, context: html, text, full: html, text
running genbank for Wallaby
- src/hg/makeDb/doc/mm9.txt
- 1.120 lines changed: 19, context: html, text, full: html, text
vega Gene update done v36 for hg19 v37 for mm9
- src/hg/makeDb/doc/oryCun2.txt
- 1.4 lines changed: 61, context: html, text, full: html, text
done with genbank for rabbit
- src/hg/makeDb/doc/sacCer2.txt
- 1.15 lines changed: 13, context: html, text, full: html, text
add liftOver to sacCer1
- src/hg/makeDb/doc/tetNig1.txt
- 1.21 lines changed: 12, context: html, text, full: html, text
liftOver to tetNig2 done
- src/hg/makeDb/doc/visiGene.txt
- 1.13 lines changed: 9, context: html, text, full: html, text
handling blank itemUrl
- src/hg/makeDb/genbank/doc/to-do.txt
- src/hg/makeDb/genbank/etc/genbank.conf
- 1.357 lines changed: 14, context: html, text, full: html, text
adding susScr1 Pig
- src/hg/makeDb/genbank/etc/hgwbeta.dbs
- src/hg/makeDb/genbank/src/lib/gbGenome.c
- 1.75 lines changed: 3, context: html, text, full: html, text
adding susScr - Pig
- src/hg/makeDb/hgCgiData/Human/microarrayGroups.ra
- src/hg/makeDb/schema/all.joiner
- 1.765 lines changed: 5, context: html, text, full: html, text
added ALG Binding tables to ce tablesIgnored
- 1.764 lines changed: 1, context: html, text, full: html, text
add aplCal to the gbd variable
- 1.763 lines changed: 1, context: html, text, full: html, text
add aplCal to the xrg variable
- 1.762 lines changed: 2, context: html, text, full: html, text
added tetNig2 to Human Proteins rules
- 1.761 lines changed: 2, context: html, text, full: html, text
Added aplCal1 to the blastHg18* identifiers
- src/hg/makeDb/trackDb/README
- 1.96 lines changed: 89, context: html, text, full: html, text
Changing README per view-in-the-middle
- src/hg/makeDb/trackDb/blastHg18KG.html
- 1.7 lines changed: 1, context: html, text, full: html, text
changed reference to 'Known Genes track' to 'UCSC Genes track'
- src/hg/makeDb/trackDb/cat/felCat3/trackDb.ra
- 1.25 lines changed: 6, context: html, text, full: html, text
moved all canFam2 chainNets to composite and dropped individual tracks. canFam2 hg18 hg19 mm9 monDom4 ornAna1 panTro2 ponAbe2 rheMac2 are live on RR
- src/hg/makeDb/trackDb/cow/bosTau4/trackDb.ra
- 1.20 lines changed: 7, context: html, text, full: html, text
moved all canFam2 chainNets to composite and dropped individual tracks. canFam2 hg18 hg19 mm9 monDom4 ornAna1 panTro2 ponAbe2 rheMac2 are live on RR
- src/hg/makeDb/trackDb/dog/canFam2/trackDb.ra
- 1.43 lines changed: 6, context: html, text, full: html, text
moved all bosTau4 chainNets to composite and dropped individual tracks. hg19, hg18, mm9, canFam2, ornAna1 are live on RR
- src/hg/makeDb/trackDb/dog/trackDb.ra
- 1.32 lines changed: 8, context: html, text, full: html, text
moved all bosTau4 chainNets to composite and dropped individual tracks. hg19, hg18, mm9, canFam2, ornAna1 are live on RR
- 1.31 lines changed: 28, context: html, text, full: html, text
moved all bosTau1&2 chainNets to composite and dropped individual tracks. hg17, mm7 are live on RR
- src/hg/makeDb/trackDb/horse/trackDb.ra
- 1.22 lines changed: 8, context: html, text, full: html, text
moved all canFam2 chainNets to composite and dropped individual tracks. canFam2 hg18 hg19 mm9 monDom4 ornAna1 panTro2 ponAbe2 rheMac2 are live on RR
- src/hg/makeDb/trackDb/human/hg17/trackDb.chainNet.ra
- 1.10 lines changed: 3, context: html, text, full: html, text
moved all bosTau1&2 chainNets to composite and dropped individual tracks. hg17, mm7 are live on RR
- src/hg/makeDb/trackDb/human/hg17/trackDb.ra
- 1.436 lines changed: 20, context: html, text, full: html, text
moved all canFam2 chainNets to composite and dropped individual tracks. canFam2 hg18 hg19 mm9 monDom4 ornAna1 panTro2 ponAbe2 rheMac2 are live on RR
- 1.435 lines changed: 40, context: html, text, full: html, text
moved all bosTau1&2 chainNets to composite and dropped individual tracks. hg17, mm7 are live on RR
- src/hg/makeDb/trackDb/human/hg18/trackDb.ra
- 1.453 lines changed: 22, context: html, text, full: html, text
moved all canFam2 chainNets to composite and dropped individual tracks. canFam2 hg18 hg19 mm9 monDom4 ornAna1 panTro2 ponAbe2 rheMac2 are live on RR
- 1.452 lines changed: 24, context: html, text, full: html, text
moved all bosTau1&2 chainNets to composite and dropped individual tracks. hg17, mm7 are live on RR
- 1.451 lines changed: 82, context: html, text, full: html, text
Added personal genome variants that were lifted from hg18 to hg19.
- 1.450 lines changed: 14, context: html, text, full: html, text
Removed block for chainFelCat1. This table does not exist in the hg18 db, and there is no reference to it in the hg18 make doc.
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
- 1.775 lines changed: 9, context: html, text, full: html, text
Fixed some UCD(Farnham) metadata
- 1.774 lines changed: 1, context: html, text, full: html, text
forgot the big on the bed again...
- 1.773 lines changed: 10, context: html, text, full: html, text
ENCODE RIKEN CAGE Tags (longNonPolyA in H1-hESC cell) alignments
- 1.772 lines changed: 61, context: html, text, full: html, text
Added Yale UCD(Farnham)s 3 Jan 2010 submissions
- 1.771 lines changed: 2, context: html, text, full: html, text
oops... need a bigBed on that last commit
- 1.770 lines changed: 41, context: html, text, full: html, text
ENCODE RIKEN CAGE Tags (longNonPolyA in NHEK nucleus)
- 1.769 lines changed: 21, context: html, text, full: html, text
Riken CAGE Gm12878Nucleolus signals
- 1.768 lines changed: 21, context: html, text, full: html, text
ENCODE Riken CAGE H1hESC
- 1.767 lines changed: 20, context: html, text, full: html, text
CSHL short RNA-seq GM12878 K562 whole cell
- 1.766 lines changed: 20, context: html, text, full: html, text
add RIKEN CAGE plus and minus clusters for HUVEC cytosol
- 1.765 lines changed: 11, context: html, text, full: html, text
RIKEN Rna-seq GM12878 nucleolus
- 1.764 lines changed: 11, context: html, text, full: html, text
Riken RNA-seq HUVEC alignments
- 1.763 lines changed: 51, context: html, text, full: html, text
add CalTech RNA-seq NHEK directional 1x75
- 1.762 lines changed: 30, context: html, text, full: html, text
Caltech RNA-seq H1hesc paired end
- 1.761 lines changed: 6, context: html, text, full: html, text
Fix to Open Chromatin setting which had a tag problem
- 1.760 lines changed: 1, context: html, text, full: html, text
fix silly toed typo
- 1.759 lines changed: 52, context: html, text, full: html, text
adding H1hesc directional to Caltech RNA-seq
- 1.758 lines changed: 12, context: html, text, full: html, text
added viewLimits settings for the six new Open Chromatin tracks
- 1.757 lines changed: 28, context: html, text, full: html, text
Added one more Open Chromatin track
- 1.756 lines changed: 136, context: html, text, full: html, text
Added 6 new Open Chromatin tracks
- 1.755 lines changed: 344, context: html, text, full: html, text
Added 9 more submissions (39 tables) for HAIB TFSB
- 1.754 lines changed: 913, context: html, text, full: html, text
Added 21 new submissions for HAIB TFSB
- src/hg/makeDb/trackDb/human/hg19/cons46way.html
- 1.10 lines changed: 6, context: html, text, full: html, text
added danRer6 links to new browser
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra
- 1.83 lines changed: 26, context: html, text, full: html, text
adding hg19 vegaGeneComposite track;
- 1.82 lines changed: 27, context: html, text, full: html, text
Added personal genome variants that were lifted from hg18 to hg19.
- 1.81 lines changed: 10, context: html, text, full: html, text
Added tRNAs track from Lowe Lab.
- src/hg/makeDb/trackDb/human/hg19/vegaGeneComposite.html
- 1.1 lines changed: 0, context: html, text, full: html, text
Adding chromosome definitions for vegaGene on hg19
- src/hg/makeDb/trackDb/human/trackDb.chainNet.ra
- 1.30 lines changed: 1, context: html, text, full: html, text
moved all bosTau3 chainNets to composite and dropped individual tracks. hg18, mm8 are live on RR
- 1.29 lines changed: 1, context: html, text, full: html, text
moved all bosTau1&2 chainNets to composite and dropped individual tracks. hg17, mm7 are live on RR
- src/hg/makeDb/trackDb/human/trackDb.ra
- 1.493 lines changed: 13, context: html, text, full: html, text
moved all canFam2 chainNets to composite and dropped individual tracks. canFam2 hg18 hg19 mm9 monDom4 ornAna1 panTro2 ponAbe2 rheMac2 are live on RR
- 1.492 lines changed: 7, context: html, text, full: html, text
moved all bosTau4 chainNets to composite and dropped individual tracks. hg19, hg18, mm9, canFam2, ornAna1 are live on RR
- 1.491 lines changed: 6, context: html, text, full: html, text
moved all bosTau3 chainNets to composite and dropped individual tracks. hg18, mm8 are live on RR
- 1.490 lines changed: 6, context: html, text, full: html, text
moved all bosTau1&2 chainNets to composite and dropped individual tracks. hg17, mm7 are live on RR
- 1.489 lines changed: 81, context: html, text, full: html, text
Added personal genome variants that were lifted from hg18 to hg19.
- src/hg/makeDb/trackDb/mouse/mm7/trackDb.chainNet.ra
- 1.8 lines changed: 3, context: html, text, full: html, text
moved all bosTau1&2 chainNets to composite and dropped individual tracks. hg17, mm7 are live on RR
- src/hg/makeDb/trackDb/mouse/mm7/trackDb.ra
- 1.60 lines changed: 3, context: html, text, full: html, text
moved all canFam2 chainNets to composite and dropped individual tracks. canFam2 hg18 hg19 mm9 monDom4 ornAna1 panTro2 ponAbe2 rheMac2 are live on RR
- 1.59 lines changed: 3, context: html, text, full: html, text
moved all bosTau1&2 chainNets to composite and dropped individual tracks. hg17, mm7 are live on RR
- src/hg/makeDb/trackDb/mouse/mm8/trackDb.chainNet.ra
- 1.9 lines changed: 3, context: html, text, full: html, text
moved all bosTau1&2 chainNets to composite and dropped individual tracks. hg17, mm7 are live on RR
- src/hg/makeDb/trackDb/mouse/mm8/trackDb.ra
- 1.63 lines changed: 22, context: html, text, full: html, text
moved all bosTau3 chainNets to composite and dropped individual tracks. hg18, mm8 are live on RR
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.chainNet.ra
- 1.3 lines changed: 3, context: html, text, full: html, text
moved all bosTau4 chainNets to composite and dropped individual tracks. hg19, hg18, mm9, canFam2, ornAna1 are live on RR
- 1.2 lines changed: 3, context: html, text, full: html, text
moved all bosTau3 chainNets to composite and dropped individual tracks. hg18, mm8 are live on RR
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra
- 1.75 lines changed: 10, context: html, text, full: html, text
Added tRNAs track.
- src/hg/makeDb/trackDb/mouse/trackDb.ra
- 1.183 lines changed: 7, context: html, text, full: html, text
Switched all chainFelCat3 and netFelCat3 tracks to be composite chainNetFelCat3 tracks.
- 1.182 lines changed: 28, context: html, text, full: html, text
moved all canFam2 chainNets to composite and dropped individual tracks. canFam2 hg18 hg19 mm9 monDom4 ornAna1 panTro2 ponAbe2 rheMac2 are live on RR
- 1.181 lines changed: 7, context: html, text, full: html, text
moved all bosTau3 chainNets to composite and dropped individual tracks. hg18, mm8 are live on RR
- 1.180 lines changed: 30, context: html, text, full: html, text
moved all bosTau1&2 chainNets to composite and dropped individual tracks. hg17, mm7 are live on RR
- src/hg/makeDb/trackDb/opossum/monDom5/trackDb.ra
- 1.25 lines changed: 10, context: html, text, full: html, text
moved all canFam2 chainNets to composite and dropped individual tracks. canFam2 hg18 hg19 mm9 monDom4 ornAna1 panTro2 ponAbe2 rheMac2 are live on RR
- src/hg/makeDb/trackDb/platypus/ornAna1/trackDb.ra
- 1.17 lines changed: 4, context: html, text, full: html, text
moved all bosTau4 chainNets to composite and dropped individual tracks. hg19, hg18, mm9, canFam2, ornAna1 are live on RR
- src/hg/makeDb/trackDb/rat/rn3/trackDb.ra
- 1.66 lines changed: 22, context: html, text, full: html, text
moved all canFam2 chainNets to composite and dropped individual tracks. canFam2 hg18 hg19 mm9 monDom4 ornAna1 panTro2 ponAbe2 rheMac2 are live on RR
- src/hg/makeDb/trackDb/rat/rn4/trackDb.ra
- 1.48 lines changed: 6, context: html, text, full: html, text
moved all canFam2 chainNets to composite and dropped individual tracks. canFam2 hg18 hg19 mm9 monDom4 ornAna1 panTro2 ponAbe2 rheMac2 are live on RR
- 1.47 lines changed: 10, context: html, text, full: html, text
Added tRNAs track for rn4.
- src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra
- 1.15 lines changed: 1, context: html, text, full: html, text
moved all bosTau1&2 chainNets to composite and dropped individual tracks. hg17, mm7 are live on RR
- src/hg/makeDb/trackDb/rat/trackDb.ra
- 1.67 lines changed: 7, context: html, text, full: html, text
moved all canFam2 chainNets to composite and dropped individual tracks. canFam2 hg18 hg19 mm9 monDom4 ornAna1 panTro2 ponAbe2 rheMac2 are live on RR
- 1.66 lines changed: 8, context: html, text, full: html, text
moved all bosTau3 chainNets to composite and dropped individual tracks. hg18, mm8 are live on RR
- 1.65 lines changed: 6, context: html, text, full: html, text
moved all bosTau1&2 chainNets to composite and dropped individual tracks. hg17, mm7 are live on RR
- src/hg/makeDb/trackDb/tRNAs.html
- 1.1 lines changed: 0, context: html, text, full: html, text
Added tRNAs.html from Lowe Lab at the top level (applicable for all genomes).
- src/hg/makeDb/trackDb/trackDb.chainNet.ra
- 1.37 lines changed: 8, context: html, text, full: html, text
moved all bosTau4 chainNets to composite and dropped individual tracks. hg19, hg18, mm9, canFam2, ornAna1 are live on RR
- 1.36 lines changed: 4, context: html, text, full: html, text
moved all bosTau3 chainNets to composite and dropped individual tracks. hg18, mm8 are live on RR
- 1.35 lines changed: 7, context: html, text, full: html, text
moved all bosTau1&2 chainNets to composite and dropped individual tracks. hg17, mm7 are live on RR
- 1.34 lines changed: 2, context: html, text, full: html, text
changed shortLabel chain and netBosTau1 o_db as it is only on dev
- src/hg/makeDb/trackDb/trackDb.ra
- 1.582 lines changed: 77, context: html, text, full: html, text
moved all bosTau4 chainNets to composite and dropped individual tracks. hg19, hg18, mm9, canFam2, ornAna1 are live on RR
- 1.581 lines changed: 27, context: html, text, full: html, text
moved all bosTau3 chainNets to composite and dropped individual tracks. hg18, mm8 are live on RR
- 1.580 lines changed: 29, context: html, text, full: html, text
moved all bosTau1&2 chainNets to composite and dropped individual tracks. hg17, mm7 are live on RR
- src/hg/makeDb/trackDb/worm/ce6/algBinding.html
- 1.2 lines changed: 50, context: html, text, full: html, text
Edited this file for typos & style.
- 1.1 lines changed: 50, context: html, text, full: html, text
Adding ALG-1 Argonaute binding sites from the Yeo lab.
- src/hg/makeDb/trackDb/worm/ce6/trackDb.ra
- 1.20 lines changed: 17, context: html, text, full: html, text
appropriate visibility defaults for algBinding track
- 1.19 lines changed: 170, context: html, text, full: html, text
Adding ALG-1 Argonaute binding sites from the Yeo lab.
- src/hg/makeDb/trackDb/zebrafish/danRer6/description.html
- 1.3 lines changed: 4, context: html, text, full: html, text
removed collorabtors who did not add to this assembly
- 1.2 lines changed: 68, context: html, text, full: html, text
Edited the zv8 assembly description.
- src/hg/utils/automation/doEnsGeneUpdate.pl
- 1.22 lines changed: 1, context: html, text, full: html, text
proper .ra name for vegaGene
- 1.21 lines changed: 37, context: html, text, full: html, text
finish doCleanup for vegaGene
- 1.20 lines changed: 122, context: html, text, full: html, text
adding vegaGene processing option
- src/hg/utils/refreshNamedSessionCustomTracks/refreshNamedSessionCustomTracks.c
- 1.11 lines changed: 24, context: html, text, full: html, text
Added option -atime=N: if a session's lastUsed is older than N days, don't refresh its custom tracks.
- src/hg/visiGene/hgVisiGene/hgVisiGene.c
- 1.102 lines changed: 2, context: html, text, full: html, text
handling blank itemUrl
- src/hg/visiGene/hgVisiGene/printCaption.c
- 1.27 lines changed: 8, context: html, text, full: html, text
handling blank itemUrl
- src/lib/cheapcgi.c
- 1.130 lines changed: 3, context: html, text, full: html, text
Fixed another old assumption about cookie format that user's cookie has broken: ';' was assumed to always be followed by ' ', but it might not be.
- 1.129 lines changed: 4, context: html, text, full: html, text
parseCookies: fixed bug that caused us to errAbort if cookie string ends with ';'.
- src/lib/https.c
- 1.4 lines changed: 1, context: html, text, full: html, text
fix compile when USE_SSL is not set
- src/parasol/version.doc
- 1.47 lines changed: 3, context: html, text, full: html, text
added note on -env option
- src/utils/qa/weeklybld/buildEnv.csh
- src/utils/qa/weeklybld/cvs-reports-d
- 1.15 lines changed: 2, context: html, text, full: html, text
trying to avoid erroring on temporary cvs lock
- lines changed: 4810
- files changed: 90