File Changes for kent

v265_base to v266_preview (2012-03-27 to 2012-04-10) v266

• README
  • lines changed 119, context: html, text, full: html, text
    Splitting up README to populate higher level README.
  • lines changed 3, context: html, text, full: html, text
    Adding more information about source tree structure and revisiting list of useful library modules.
• python/style.txt
  • lines changed 1, context: html, text, full: html, text
    Removing 'rare' for the acronym case, since it's not so rare.
• src/README
  • lines changed 34, context: html, text, full: html, text
    Updating style guide a little to allow // comments mostly.
  • lines changed 23, context: html, text, full: html, text
    Adding recommendations against long lines and long functions.
  • lines changed 4, context: html, text, full: html, text
    Minor edits.
  • lines changed 18, context: html, text, full: html, text
    More wordsmithing
  • lines changed 27, context: html, text, full: html, text
    Adding a section on modules.
  • lines changed 116, context: html, text, full: html, text
    Splitting up README to populate higher level README.
  • lines changed 52, context: html, text, full: html, text
    Adding more information about source tree structure and revisiting list of useful library modules.
• src/hg/autoDtd/autoDtd.c
  • lines changed 463, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/doTest
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/makefile
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/test/chado/expected.atree
  • lines changed 77, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/test/chado/expected.dtd
  • lines changed 183, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/test/chado/expected.stats
  • lines changed 190, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/test/chado/expected.tree
  • lines changed 77, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/test/chado/in.xml
  • lines changed 1017, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/test/hotnews/expected.atree
  • lines changed 18, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 18, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/test/hotnews/expected.dtd
  • lines changed 58, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 58, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/test/hotnews/expected.stats
  • lines changed 49, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 49, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/test/hotnews/expected.tree
  • lines changed 18, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/test/hotnews/in.xml
  • lines changed 77, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/test/shapes/expected.atree
  • lines changed 4, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/test/shapes/expected.dtd
  • lines changed 23, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 23, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/test/shapes/expected.stats
  • lines changed 22, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/test/shapes/expected.tree
  • lines changed 4, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoDtd/test/shapes/in.xml
  • lines changed 16, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 16, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/.gitignore
  • lines changed 1, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/autoSql.c
  • lines changed 128, context: html, text, full: html, text
    First cut of Django output for autoSql.
  • lines changed 1946, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/autoSql.doc
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/commonSh.c
  • lines changed 39, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/doc.as
  • lines changed 17, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/doc2.as
  • lines changed 33, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 33, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/eztok.c
  • lines changed 71, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/eztok.h
  • lines changed 18, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 18, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/makefile
  • lines changed 29, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 29, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/.gitignore
  • lines changed 5, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 5, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/dbLinkTest.c
  • lines changed 326, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 326, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/dbLinkTest.out
  • lines changed 5, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/doc.c
  • lines changed 336, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 336, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/doc.h
  • lines changed 135, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 135, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/doc.sql
  • lines changed 24, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/doc2.c
  • lines changed 622, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 622, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/doc2.h
  • lines changed 200, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 200, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/doc2.sql
  • lines changed 14, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/hardTest.c
  • lines changed 447, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/hardTest.h
  • lines changed 120, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/hardTest.sql
  • lines changed 26, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/jsonTest.out
  • lines changed 16, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/mainTest.c
  • lines changed 859, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 859, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/mainTest.h
  • lines changed 287, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 287, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/mainTest.sql
  • lines changed 33, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 33, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/newTest.c
  • lines changed 434, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/newTest.err
  • lines changed 2, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/newTest.h
  • lines changed 140, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/newTest.sql
  • lines changed 21, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/polyTest.c
  • lines changed 428, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/polyTest.h
  • lines changed 157, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/polyTest.sql
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/simpleTest.c
  • lines changed 1037, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/simpleTest.h
  • lines changed 399, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/simpleTest.sql
  • lines changed 12, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/symColsTest.tab
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/symTest.c
  • lines changed 134, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/symTest.err
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/symTest.h
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/symTest.sql
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/expected/testHarness.out
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/input/doc.as
  • lines changed 17, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/input/doc2.as
  • lines changed 33, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/input/hardTest.as
  • lines changed 28, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/input/mainTest.as
  • lines changed 51, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/input/newTest.as
  • lines changed 22, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/input/polyTest.as
  • lines changed 25, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/input/simpleTest.as
  • lines changed 66, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/input/symColsTest.tab
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/input/symTest.as
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/jsonTest.c
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/makefile
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/testHarness.c
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoSql/tests/testSymCols.c
  • lines changed 117, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoXml/autoXml.c
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoXml/autoXml.doc
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoXml/dasBed.dtdx
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoXml/doTest
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoXml/makefile
  • lines changed 1, context: html, text, full: html, text
    Removing dependence on src/hg/lib
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoXml/polygon.dtdx
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoXml/t/makefile
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoXml/t/t.c
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoXml/test.dtdx
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoXml/test/dasGff/dasGff.dtd
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    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoXml/test/dasGff/expected/dasGff.c
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• src/hg/autoXml/test/dasGff/expected/dasGff.h
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    Removing MySQL linking dependency.
  • lines changed 387, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoXml/test/polygon/expected/polygon.c
  • lines changed 241, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 241, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoXml/test/polygon/expected/polygon.h
  • lines changed 89, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 89, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/autoXml/test/polygon/polygon.dtd
  • lines changed 11, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 11, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/hg/lib/hvGfx.c
  • lines changed 16, context: html, text, full: html, text
    Adding commas to ruler on Genome Browser. Redmine #7559
• src/hg/makeDb/doc/hg19.txt
  • lines changed 1, context: html, text, full: html, text
    Noting update of wgEncodeRegTfbsClustered
• src/hg/oneShot/testCvToSql/foo.c
  • lines changed 4302, context: html, text, full: html, text
    Making autoSql output all in single file. Escaping some quotes. Dodging 'grant' reserved word in SQL.
  • lines changed 4302, context: html, text, full: html, text
    Did not mean to commit that autoSql output!
  • lines changed 4305, context: html, text, full: html, text
    Adding long string support.
  • lines changed 4305, context: html, text, full: html, text
    Making a more literal translation of cv.ra into database.
• src/hg/oneShot/testCvToSql/testCvToSql.c
  • lines changed 277, context: html, text, full: html, text
    Working on a program to help convert cv.ra to a relational database.
  • lines changed 98, context: html, text, full: html, text
    Removing no longer used code.
  • lines changed 207, context: html, text, full: html, text
    Making it so that it creates an 'atree' type output that is somewhat rearranged from order and name of fields in cv.ra.
  • lines changed 90, context: html, text, full: html, text
    Adding deprecated field to all tables lacking one.
  • lines changed 255, context: html, text, full: html, text
    Starting to output data as opposed to field structure. Starting to implement merging of fields.
  • lines changed 12, context: html, text, full: html, text
    Checking no tabs in wrong places in input. Removing some debugging.
  • lines changed 109, context: html, text, full: html, text
    Starting to make .as output.
  • lines changed 62, context: html, text, full: html, text
    Improving .as output. Still need to fill in field doc string.
  • lines changed 75, context: html, text, full: html, text
    Adding field descriptions.
  • lines changed 19, context: html, text, full: html, text
    Making autoSql output all in single file. Escaping some quotes. Dodging 'grant' reserved word in SQL.
  • lines changed 12, context: html, text, full: html, text
    Adding long string support.
  • lines changed 226, context: html, text, full: html, text
    Starting to split antibody table.
  • lines changed 8, context: html, text, full: html, text
    Looks like split of antibody table may work as well as can automate. Will require some curation.....
  • lines changed 15, context: html, text, full: html, text
    Making a more literal translation of cv.ra into database.
• src/inc/asParse.h
  • lines changed 1, context: html, text, full: html, text
    First cut of Django output for autoSql.
• src/inc/common.h
  • lines changed 1, context: html, text, full: html, text
    Improving comments.
• src/inc/sqlNum.h
  • lines changed 7, context: html, text, full: html, text
    Improving comments.
• src/lib/asParse.c
  • lines changed 34, context: html, text, full: html, text
    First cut of Django output for autoSql.
• src/lib/common.c
  • lines changed 3, context: html, text, full: html, text
    Improving comments.
• src/utils/autoDtd/autoDtd.c
  • lines changed 463, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 463, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/doTest
  • lines changed 13, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 13, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/makefile
  • lines changed 18, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 18, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/test/chado/expected.atree
  • lines changed 77, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 77, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/test/chado/expected.dtd
  • lines changed 183, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 183, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/test/chado/expected.stats
  • lines changed 190, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 190, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/test/chado/expected.tree
  • lines changed 77, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 77, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/test/chado/in.xml
  • lines changed 1017, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 1017, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/test/hotnews/expected.atree
  • lines changed 18, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 18, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/test/hotnews/expected.dtd
  • lines changed 58, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 58, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/test/hotnews/expected.stats
  • lines changed 49, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 49, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/test/hotnews/expected.tree
  • lines changed 18, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 18, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/test/hotnews/in.xml
  • lines changed 77, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 77, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/test/shapes/expected.atree
  • lines changed 4, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 4, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/test/shapes/expected.dtd
  • lines changed 23, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 23, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/test/shapes/expected.stats
  • lines changed 22, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 22, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/test/shapes/expected.tree
  • lines changed 4, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 4, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoDtd/test/shapes/in.xml
  • lines changed 16, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 16, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/.gitignore
  • lines changed 1, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 1, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/autoSql.c
  • lines changed 1946, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 1946, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/autoSql.doc
  • lines changed 312, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 312, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/commonSh.c
  • lines changed 39, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 39, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/doc.as
  • lines changed 17, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 17, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/doc2.as
  • lines changed 33, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 33, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/eztok.c
  • lines changed 71, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 71, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/eztok.h
  • lines changed 18, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 18, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/makefile
  • lines changed 29, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 29, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/.gitignore
  • lines changed 5, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 5, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/dbLinkTest.c
  • lines changed 326, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/dbLinkTest.out
  • lines changed 5, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 5, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/doc.c
  • lines changed 336, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 336, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/doc.h
  • lines changed 135, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 135, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/doc.sql
  • lines changed 24, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 24, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/doc2.c
  • lines changed 622, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 622, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/doc2.h
  • lines changed 200, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 200, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/doc2.sql
  • lines changed 14, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 14, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/hardTest.c
  • lines changed 447, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 447, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/hardTest.h
  • lines changed 120, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 120, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/hardTest.sql
  • lines changed 26, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 26, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/jsonTest.out
  • lines changed 16, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 16, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/mainTest.c
  • lines changed 859, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 859, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/mainTest.h
  • lines changed 287, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 287, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/mainTest.sql
  • lines changed 33, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 33, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/newTest.c
  • lines changed 434, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 434, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/newTest.err
  • lines changed 2, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 2, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/newTest.h
  • lines changed 140, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 140, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/newTest.sql
  • lines changed 21, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 21, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/polyTest.c
  • lines changed 428, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 428, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/polyTest.h
  • lines changed 157, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 157, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/polyTest.sql
  • lines changed 23, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 23, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/simpleTest.c
  • lines changed 1037, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 1037, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/simpleTest.h
  • lines changed 399, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 399, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/simpleTest.sql
  • lines changed 12, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 12, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/symColsTest.tab
  • lines changed 6, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 6, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/symTest.c
  • lines changed 134, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 134, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/symTest.err
  • lines changed 0, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/symTest.h
  • lines changed 75, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 75, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/symTest.sql
  • lines changed 13, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 13, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/expected/testHarness.out
  • lines changed 17, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 17, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/input/doc.as
  • lines changed 17, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 17, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/input/doc2.as
  • lines changed 33, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 33, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/input/hardTest.as
  • lines changed 28, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 28, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/input/mainTest.as
  • lines changed 51, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 51, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/input/newTest.as
  • lines changed 22, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 22, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/input/polyTest.as
  • lines changed 25, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 25, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/input/simpleTest.as
  • lines changed 66, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 66, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/input/symColsTest.tab
  • lines changed 6, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 6, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/input/symTest.as
  • lines changed 8, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 8, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/jsonTest.c
  • lines changed 114, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 114, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/makefile
  • lines changed 118, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 118, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/testHarness.c
  • lines changed 193, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 193, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoSql/tests/testSymCols.c
  • lines changed 117, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 117, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoXml/autoXml.c
  • lines changed 724, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 724, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoXml/autoXml.doc
  • lines changed 190, context: html, text, full: html, text
    Removing MySQL linking dependency.
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    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoXml/dasBed.dtdx
  • lines changed 43, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 43, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoXml/doTest
  • lines changed 5, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 5, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoXml/makefile
  • lines changed 17, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 17, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoXml/polygon.dtdx
  • lines changed 9, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 9, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoXml/t/makefile
  • lines changed 14, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 14, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoXml/t/t.c
  • lines changed 255, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 255, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoXml/test.dtdx
  • lines changed 36, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 36, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoXml/test/dasGff/dasGff.dtd
  • lines changed 45, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 45, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoXml/test/dasGff/expected/dasGff.c
  • lines changed 1281, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 1281, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoXml/test/dasGff/expected/dasGff.h
  • lines changed 387, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 387, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoXml/test/polygon/expected/polygon.c
  • lines changed 241, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 241, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoXml/test/polygon/expected/polygon.h
  • lines changed 89, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 89, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/autoXml/test/polygon/polygon.dtd
  • lines changed 11, context: html, text, full: html, text
    Removing MySQL linking dependency.
  • lines changed 11, context: html, text, full: html, text
    Moving autoSql and autoDtd and autoXml back to just under hg. A little autoSql -django fix.
• src/utils/raSqlQuery/raSqlQuery.c
  • lines changed 2, context: html, text, full: html, text
    Improving usage message which was lacking 'from' clause.