File Changes for larrym

v271_preview to v271_preview2 (2012-07-24 to 2012-07-31) v271

• src/hg/hgBlat/hgBlat.c
  • lines changed 1, context: html, text, full: html, text
    remove hBackgroundImage and hgColOutside
• src/hg/hgFileSearch/hgFileSearch.c
  • lines changed 4, context: html, text, full: html, text
    hBackgroundImage
  • lines changed 13, context: html, text, full: html, text
    resolve merge conflict with master
  • lines changed 7, context: html, text, full: html, text
    resolve merge conflict with master
• src/hg/hgFileUi/hgFileUi.c
  • lines changed 1, context: html, text, full: html, text
    hBackgroundImage
  • lines changed 2, context: html, text, full: html, text
    resolve merge conflict with master
• src/hg/hgGateway/hgGateway.c
  • lines changed 22, context: html, text, full: html, text
    integrate suggest into the position box
  • lines changed 64, context: html, text, full: html, text
    resolve merge conflict with master
  • lines changed 8, context: html, text, full: html, text
    tweak tables to accomodate new layout
  • lines changed 1, context: html, text, full: html, text
    make watermark more concise to address width problem in hgGateway
• src/hg/hgGenome/browseRegions.c
  • lines changed 1, context: html, text, full: html, text
    hBackgroundImage
• src/hg/hgPcr/hgPcr.c
  • lines changed 1, context: html, text, full: html, text
    hBackgroundImage
• src/hg/hgSuggest/hgSuggest.c
  • lines changed 17, context: html, text, full: html, text
    Include description in gene suggest list to accomodate ambiguous entries (#5962)
• src/hg/hgTables/hgTables.c
  • lines changed 1, context: html, text, full: html, text
    hBackgroundImage
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 1, context: html, text, full: html, text
    remove hBackgroundImage and hgColOutside
• src/hg/hgTracks/hgTracks.c
  • lines changed 3, context: html, text, full: html, text
    enable MERGE_GENE_SUGGEST; remove jumpButtonOnClick from submit button b/c it is no longer needed with merged suggest; change 1em to 0.3em spacing to save some real estate
  • lines changed 22, context: html, text, full: html, text
    remove obsolete code
  • lines changed 101, context: html, text, full: html, text
    resolve merge conflict with master
• src/hg/hgTracks/imageV2.c
  • lines changed 4, context: html, text, full: html, text
    remove explicit background for imgTbl (will be done in style file)
  • lines changed 70, context: html, text, full: html, text
    resolve merge conflict with master
• src/hg/hgTracks/mainMain.c
  • lines changed 1, context: html, text, full: html, text
    remove hBackgroundImage and hgColOutside
  • lines changed 1, context: html, text, full: html, text
    add hgTracks class to HEAD so we can special-case hgTracks background
  • lines changed 1, context: html, text, full: html, text
    always add CGI name to the body class (enables special casing in style files)
• src/hg/hgTracks/menu.c
  • lines changed 172, context: html, text, full: html, text
    start of new menu code
  • lines changed 1, context: html, text, full: html, text
    restore odd/even code
  • lines changed 5, context: html, text, full: html, text
    remove odd/even classes for view menu
• src/hg/htdocs/inc/globalNavBar.inc
  • lines changed 1, context: html, text, full: html, text
    use LOGIN_START/LOGIN_END comments to strip the hgLogin menu item for sites that aren't using hgLogin
  • lines changed 4, context: html, text, full: html, text
    change geo mirror items to OPTIONAL_GEO_MIRROR_ITEMS
  • lines changed 1, context: html, text, full: html, text
    add anchor to Source Code link
  • lines changed 2, context: html, text, full: html, text
    restore context specific help for some CGIs
  • lines changed 3, context: html, text, full: html, text
    remove Log in/out menu item
• src/hg/htdocs/style/HGStyle.css
  • lines changed 1, context: html, text, full: html, text
    add default background to body.cgi (used to put in the BODY tag)
  • lines changed 2, context: html, text, full: html, text
    restore definition of .positionDisplay
  • lines changed 5, context: html, text, full: html, text
    de-emphasize positionInput (work-in-progress)
  • lines changed 17, context: html, text, full: html, text
    move some stuff into css file
• src/hg/inc/hgColors.h
  • lines changed 3, context: html, text, full: html, text
    remove hBackgroundImage and hgColOutside
• src/hg/inc/hui.h
  • lines changed 3, context: html, text, full: html, text
    remove hBackgroundImage and hgColOutside
• src/hg/inc/web.h
  • lines changed 3, context: html, text, full: html, text
    start of new menu code
  • lines changed 3, context: html, text, full: html, text
    use new menus everywhere in hgNear
  • lines changed 8, context: html, text, full: html, text
    resolve merge conflict with master
• src/hg/js/autocomplete.js
  • lines changed 64, context: html, text, full: html, text
    refactor suggestBox code into autocomplete.js so it can be re-used in hgGateway
  • lines changed 2, context: html, text, full: html, text
    fix a comment
  • lines changed 3, context: html, text, full: html, text
    change selectCallback so callback has more info
  • lines changed 22, context: html, text, full: html, text
    set hgFind.matches to highlight items choosen by users (#6330)
  • lines changed 28, context: html, text, full: html, text
    remove obsolete code
  • lines changed 33, context: html, text, full: html, text
    code cleanup (get rid of suggestCache global)
  • lines changed 2, context: html, text, full: html, text
    make watermark more concise to address width problem in hgGateway
  • lines changed 1, context: html, text, full: html, text
    reset positionInput watermark when user zooms
• src/hg/js/hgGateway.js
  • lines changed 44, context: html, text, full: html, text
    use suggestBox
  • lines changed 3, context: html, text, full: html, text
    change selectCallback so callback has more info
  • lines changed 9, context: html, text, full: html, text
    simplify suggestTrack code
  • lines changed 6, context: html, text, full: html, text
    code cleanup
• src/hg/js/hgTracks.js
  • lines changed 74, context: html, text, full: html, text
    refactor suggestBox code into autocomplete.js so it can be re-used in hgGateway
  • lines changed 4, context: html, text, full: html, text
    move comment back to the right place
  • lines changed 5, context: html, text, full: html, text
    handle situations where positionInput doesn't exist (e.g. PDF Output page)
  • lines changed 9, context: html, text, full: html, text
    change selectCallback so callback has more info
  • lines changed 5, context: html, text, full: html, text
    set hgFind.matches to highlight items choosen by users (#6330)
  • lines changed 26, context: html, text, full: html, text
    remove obsolete code
  • lines changed 9, context: html, text, full: html, text
    add hgFind.matches only if last thing user did was to choose from suggest
  • lines changed 41, context: html, text, full: html, text
    reset positionInput watermark when user zooms
  • lines changed 1, context: html, text, full: html, text
    fix vis.makeTrackVisible code
• src/hg/js/utils.js
  • lines changed 4, context: html, text, full: html, text
    move some stuff into css file
• src/hg/lib/cart.c
  • lines changed 30, context: html, text, full: html, text
    support browser.style
  • lines changed 46, context: html, text, full: html, text
    resolve merge conflict with master
  • lines changed 2, context: html, text, full: html, text
    fix compiler error
• src/hg/lib/hgColors.c
  • lines changed 6, context: html, text, full: html, text
    hBackgroundImage
• src/hg/lib/hgFind.c
  • lines changed 10, context: html, text, full: html, text
    move some stuff into css file
• src/hg/lib/hui.c
  • lines changed 7, context: html, text, full: html, text
    hBackgroundImage
  • lines changed 9, context: html, text, full: html, text
    resolve merge conflict with master
• src/hg/lib/web.c
  • lines changed 218, context: html, text, full: html, text
    start of new menu code
  • lines changed 3, context: html, text, full: html, text
    hBackgroundImage
  • lines changed 2, context: html, text, full: html, text
    refactor BODY code; add class='cgi' so we can special case dynamic code
  • lines changed 5, context: html, text, full: html, text
    use LOGIN_START/LOGIN_END comments to strip the hgLogin menu item for sites that aren't using hgLogin
  • lines changed 54, context: html, text, full: html, text
    restore context specific help for some CGIs
  • lines changed 7, context: html, text, full: html, text
    add context-sensitive help for hgCustom
  • lines changed 40, context: html, text, full: html, text
    use new menus everywhere in hgNear
  • lines changed 180, context: html, text, full: html, text
    resolve merge conflict with master
  • lines changed 4, context: html, text, full: html, text
    use cloneString in setContextSpecificHelp
• src/hg/near/hgNear/configure.c
  • lines changed 2, context: html, text, full: html, text
    use new menus everywhere in hgNear
• src/hg/near/hgNear/customColumn.c
  • lines changed 10, context: html, text, full: html, text
    use new menus everywhere in hgNear
• src/hg/near/hgNear/hgNear.c
  • lines changed 4, context: html, text, full: html, text
    add standard menu
  • lines changed 9, context: html, text, full: html, text
    work in progress to use new menus
  • lines changed 4, context: html, text, full: html, text
    use new menus everywhere in hgNear
• src/hg/near/hgNear/order.c
  • lines changed 3, context: html, text, full: html, text
    use new menus everywhere in hgNear
• src/hg/phyloGif/phyloGif.c
  • lines changed 1, context: html, text, full: html, text
    remove hBackgroundImage and hgColOutside
• src/hg/protein/pbGlobal/pbGlobal.c
  • lines changed 1, context: html, text, full: html, text
    support browser.style
• src/hg/protein/pbTracks/pbTracks.c
  • lines changed 1, context: html, text, full: html, text
    support browser.style
• src/hg/utils/automation/geoMirrorNode.pl
  • lines changed 0, context: html, text, full: html, text
    Merge commit 'origin'; branch 'master' into newMenu
• src/inc/htmshell.h
  • lines changed 3, context: html, text, full: html, text
    refactor BODY code; add class='cgi' so we can special case dynamic code
• src/lib/htmshell.c
  • lines changed 27, context: html, text, full: html, text
    refactor BODY code; add class='cgi' so we can special case dynamic code
  • lines changed 14, context: html, text, full: html, text
    always add CGI name to the body class (enables special casing in style files)
  • lines changed 14, context: html, text, full: html, text
    Merge commit 'origin'; branch 'master' into newMenu
  • lines changed 4, context: html, text, full: html, text
    move some stuff into css file