File Changes for kate

v304_base to v305_preview (2014-08-11 to 2014-08-18) v305

• src/hg/htdocs/ENCODE/FAQ/index.html
  • lines changed 47, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/dataMatrix/encodeChipMatrixHg18.html
  • lines changed 11, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/dataMatrix/encodeChipMatrixHuman.html
  • lines changed 1, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/dataMatrix/encodeChipMatrixInclude.html
  • lines changed 1, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/dataMatrix/encodeChipMatrixMouse.html
  • lines changed 1, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/dataMatrix/encodeDataMatrixHg18.html
  • lines changed 11, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/dataMatrix/encodeDataMatrixHuman.html
  • lines changed 1, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/dataMatrix/encodeDataMatrixInclude.html
  • lines changed 2, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/dataMatrix/encodeDataMatrixMouse.html
  • lines changed 1, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/dataMatrix/encodeDataSummaryHuman.html
  • lines changed 1, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/dataMatrix/encodeDataSummaryInclude.html
  • lines changed 2, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/dataMatrix/encodeDataSummaryMouse.html
  • lines changed 1, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/downloads.html
  • lines changed 139, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/downloadsMouse.html
  • lines changed 9, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/fileFormats.html
  • lines changed 2, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/index.html
  • lines changed 269, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/usageResources.html
  • lines changed 3, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/images/encode/browser.png
  • lines changed 0, context: html, text, full: html, text
    Add screenshots of tools for new UCSC ENCODE home page. refs #13616
• src/hg/htdocs/images/encode/dataMatrix.png
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    Add screenshots of tools for new UCSC ENCODE home page. refs #13616
• src/hg/htdocs/images/encode/search.png
  • lines changed 0, context: html, text, full: html, text
    Add screenshots of tools for new UCSC ENCODE home page. refs #13616
• src/hg/htdocs/images/encode/stanfordSearch.png
  • lines changed 0, context: html, text, full: html, text
    Add screenshots of tools for new UCSC ENCODE home page. refs #13616
• src/hg/htdocs/images/gbLogoOnly.png
  • lines changed 0, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/inc/encodeProjectSoftware.topbar.html
  • lines changed 8, context: html, text, full: html, text
    Second round of UCSC-ifying ENCODE pages. Change color scheme and logo, and revamp home page. Intended as final pass for QA before cutover of encodeproject.org to Stanford. refs #13616
• src/hg/inc/gtexData.h
  • lines changed 64, context: html, text, full: html, text
    Cleanup
• src/hg/inc/gtexDonor.h
  • lines changed 69, context: html, text, full: html, text
    Add lib files for gtexDonor table. refs #13504
• src/hg/inc/gtexSample.h
  • lines changed 5, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
• src/hg/inc/gtexSampleData.h
  • lines changed 69, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
• src/hg/inc/gtexTissue.h
  • lines changed 69, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
• src/hg/inc/gtexTissueData.h
  • lines changed 64, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
• src/hg/lib/gtexData.as
  • lines changed 7, context: html, text, full: html, text
    Cleanup
• src/hg/lib/gtexData.c
  • lines changed 156, context: html, text, full: html, text
    Cleanup
• src/hg/lib/gtexDonor.as
  • lines changed 8, context: html, text, full: html, text
    Add lib files for gtexDonor table. refs #13504
• src/hg/lib/gtexDonor.c
  • lines changed 152, context: html, text, full: html, text
    Add lib files for gtexDonor table. refs #13504
• src/hg/lib/gtexDonor.sql
  • lines changed 14, context: html, text, full: html, text
    Add lib files for gtexDonor table. refs #13504
• src/hg/lib/gtexSample.as
  • lines changed 4, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
• src/hg/lib/gtexSample.c
  • lines changed 21, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
• src/hg/lib/gtexSample.sql
  • lines changed 13, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
• src/hg/lib/gtexSampleData.as
  • lines changed 8, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
• src/hg/lib/gtexSampleData.c
  • lines changed 155, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
  • lines changed 2, context: html, text, full: html, text
    Add gtexDonor table. Fix some table loading problems. refs #13504
• src/hg/lib/gtexSampleData.sql
  • lines changed 14, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
  • lines changed 2, context: html, text, full: html, text
    Add gtexDonor table. Fix some table loading problems. refs #13504
• src/hg/lib/gtexTissue.as
  • lines changed 8, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
• src/hg/lib/gtexTissue.c
  • lines changed 155, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
• src/hg/lib/gtexTissue.sql
  • lines changed 14, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
• src/hg/lib/gtexTissueData.as
  • lines changed 7, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
• src/hg/lib/gtexTissueData.c
  • lines changed 158, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
• src/hg/lib/gtexTissueData.sql
  • lines changed 13, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
• src/hg/lib/makefile
  • lines changed 3, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
  • lines changed 1, context: html, text, full: html, text
    Add gtexDonor table. Fix some table loading problems. refs #13504
• src/hg/makeDb/doc/gtex/2014-jan.txt
  • lines changed 59, context: html, text, full: html, text
    Add table of levels for all GTEX samples. refs #13504
  • lines changed 7, context: html, text, full: html, text
    Add gtexDonor table. Fix some table loading problems. refs #13504
• src/hg/makeDb/outside/hgGtex/expected/gtexTest.tab
  • lines changed 3, context: html, text, full: html, text
    Cleanup
• src/hg/makeDb/outside/hgGtex/expected/gtexTestDonor.tab
  • lines changed 214, context: html, text, full: html, text
    Add gtexDonor table. Fix some table loading problems. refs #13504
• src/hg/makeDb/outside/hgGtex/expected/gtexTestSample.tab
  • lines changed 2921, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
• src/hg/makeDb/outside/hgGtex/expected/gtexTestSampleData.tab
  • lines changed 8763, context: html, text, full: html, text
    Add gtexDonor table. Fix some table loading problems. refs #13504
• src/hg/makeDb/outside/hgGtex/expected/gtexTestSamples.tab
  • lines changed 2921, context: html, text, full: html, text
    Cleanup
• src/hg/makeDb/outside/hgGtex/expected/gtexTestTissue.tab
  • lines changed 53, context: html, text, full: html, text
    Add gtexDonor table. Fix some table loading problems. refs #13504
• src/hg/makeDb/outside/hgGtex/expected/gtexTestTissueData.tab
  • lines changed 3, context: html, text, full: html, text
    Add gtexDonor table. Fix some table loading problems. refs #13504
• src/hg/makeDb/outside/hgGtex/hgGtex.c
  • lines changed 2, context: html, text, full: html, text
    Swap param order for consistency
  • lines changed 96, context: html, text, full: html, text
    Add table of levels for all GTEX samples. refs #13504
  • lines changed 380, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
  • lines changed 21, context: html, text, full: html, text
    Make it more readable, as per braney code review. refs #13801
  • lines changed 112, context: html, text, full: html, text
    Add gtexDonor table. Fix some table loading problems. refs #13504
• src/hg/makeDb/outside/hgGtex/makefile
  • lines changed 2, context: html, text, full: html, text
    Add table of levels for all GTEX samples. refs #13504
  • lines changed 12, context: html, text, full: html, text
    Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504
  • lines changed 3, context: html, text, full: html, text
    Clean up test targets
• src/hg/makeDb/outside/makefile
  • lines changed 1, context: html, text, full: html, text
    Make it more readable, as per braney code review. refs #13801