All File Changes

v334_preview2 to v334_base (2016-06-06 to 2016-06-13) v334

• src/browserbox/root/updateBrowser.sh
  • lines changed 8, context: html, text, full: html, text
    d4602fb53954917fe94513be398074f0ff03b23f Mon Jun 6 16:55:11 2016 -0700
    adding imagemagick to gbib, refs #15312
    
• src/hg/cirm/cdw/cdwMakeFileTags/cdwMakeFileTags.c
  • lines changed 42, context: html, text, full: html, text
    cf9cd3ef793f93183997f5d908f3eb27fc84ec9d Wed Jun 8 14:52:39 2016 -0700
    Checking that all fields in cdwFileTags would be unique in a case insensitive way before deleting old table. Getting rid of unused items in cdwMetaTags table.
    
• src/hg/cirm/cdw/cdwQuery/cdwQuery.c
  • lines changed 1, context: html, text, full: html, text
    5f552f1a0ee9b190c5c88434da3327c323afc797 Wed Jun 8 14:26:20 2016 -0700
    Moving bits of tdbQuery that checked for fields not existing in a query statement to rqlParse.c, and making cdwQuery do this check as well.
    
• src/hg/cirm/cdw/inc/cdwLib.h
  • lines changed 3, context: html, text, full: html, text
    26bef6a063e059b25da8ed4f2a102305f6cc6ed7 Wed Jun 8 14:28:22 2016 -0700
    Making it so that rql queries to cdw tags are checked for nonexistent fields.
    
• src/hg/cirm/cdw/lib/cdwLib.c
  • lines changed 11, context: html, text, full: html, text
    26bef6a063e059b25da8ed4f2a102305f6cc6ed7 Wed Jun 8 14:28:22 2016 -0700
    Making it so that rql queries to cdw tags are checked for nonexistent fields.
    
• src/hg/cirm/cdw/lib/cdwValid.c
  • lines changed 13, context: html, text, full: html, text
    741b0531d412a34731ada11992985903e1a30ce7 Wed Jun 8 14:51:01 2016 -0700
    Adding additional checks on casing of GEO tags.
    
• src/hg/encode3/validateManifest/Manifest file - Encode-DCC Wiki.htm
  • lines changed 0, context: html, text, full: html, text
    dde5410474e784356a930343734d5470d443ca43 Mon Jun 6 15:29:20 2016 -0700
    Between the spaces in the filenames and the dos newlines, this was more trouble than it was worth, messes up git-reports too. I have removed it. We still have a plain text version which is simple and retains most of the information.
    
• src/hg/encode3/validateManifest/Manifest file - Encode-DCC Wiki_comhaid/load.css
  • lines changed 0, context: html, text, full: html, text
    dde5410474e784356a930343734d5470d443ca43 Mon Jun 6 15:29:20 2016 -0700
    Between the spaces in the filenames and the dos newlines, this was more trouble than it was worth, messes up git-reports too. I have removed it. We still have a plain text version which is simple and retains most of the information.
    
• src/hg/encode3/validateManifest/Manifest file - Encode-DCC Wiki_comhaid/load.php
  • lines changed 0, context: html, text, full: html, text
    dde5410474e784356a930343734d5470d443ca43 Mon Jun 6 15:29:20 2016 -0700
    Between the spaces in the filenames and the dos newlines, this was more trouble than it was worth, messes up git-reports too. I have removed it. We still have a plain text version which is simple and retains most of the information.
    
• src/hg/encode3/validateManifest/Manifest file - Encode-DCC Wiki_comhaid/load_002.css
  • lines changed 0, context: html, text, full: html, text
    dde5410474e784356a930343734d5470d443ca43 Mon Jun 6 15:29:20 2016 -0700
    Between the spaces in the filenames and the dos newlines, this was more trouble than it was worth, messes up git-reports too. I have removed it. We still have a plain text version which is simple and retains most of the information.
    
• src/hg/encode3/validateManifest/Manifest file - Encode-DCC Wiki_comhaid/load_002.php
  • lines changed 0, context: html, text, full: html, text
    dde5410474e784356a930343734d5470d443ca43 Mon Jun 6 15:29:20 2016 -0700
    Between the spaces in the filenames and the dos newlines, this was more trouble than it was worth, messes up git-reports too. I have removed it. We still have a plain text version which is simple and retains most of the information.
    
• src/hg/encode3/validateManifest/Manifest file - Encode-DCC Wiki_comhaid/load_003.php
  • lines changed 0, context: html, text, full: html, text
    dde5410474e784356a930343734d5470d443ca43 Mon Jun 6 15:29:20 2016 -0700
    Between the spaces in the filenames and the dos newlines, this was more trouble than it was worth, messes up git-reports too. I have removed it. We still have a plain text version which is simple and retains most of the information.
    
• src/hg/encode3/validateManifest/Manifest file - Encode-DCC Wiki_comhaid/load_004.php
  • lines changed 0, context: html, text, full: html, text
    dde5410474e784356a930343734d5470d443ca43 Mon Jun 6 15:29:20 2016 -0700
    Between the spaces in the filenames and the dos newlines, this was more trouble than it was worth, messes up git-reports too. I have removed it. We still have a plain text version which is simple and retains most of the information.
    
• src/hg/encode3/validateManifest/Manifest file - Encode-DCC Wiki_comhaid/load_005.php
  • lines changed 0, context: html, text, full: html, text
    dde5410474e784356a930343734d5470d443ca43 Mon Jun 6 15:29:20 2016 -0700
    Between the spaces in the filenames and the dos newlines, this was more trouble than it was worth, messes up git-reports too. I have removed it. We still have a plain text version which is simple and retains most of the information.
    
• src/hg/encode3/validateManifest/Manifest file - Encode-DCC Wiki_comhaid/load_006.php
  • lines changed 0, context: html, text, full: html, text
    dde5410474e784356a930343734d5470d443ca43 Mon Jun 6 15:29:20 2016 -0700
    Between the spaces in the filenames and the dos newlines, this was more trouble than it was worth, messes up git-reports too. I have removed it. We still have a plain text version which is simple and retains most of the information.
    
• src/hg/encode3/validateManifest/Manifest file - Encode-DCC Wiki_comhaid/load_007.php
  • lines changed 0, context: html, text, full: html, text
    dde5410474e784356a930343734d5470d443ca43 Mon Jun 6 15:29:20 2016 -0700
    Between the spaces in the filenames and the dos newlines, this was more trouble than it was worth, messes up git-reports too. I have removed it. We still have a plain text version which is simple and retains most of the information.
    
• src/hg/encode3/validateManifest/Manifest file - Encode-DCC Wiki_comhaid/poweredby_mediawiki_88x31.png
  • lines changed 0, context: html, text, full: html, text
    dde5410474e784356a930343734d5470d443ca43 Mon Jun 6 15:29:20 2016 -0700
    Between the spaces in the filenames and the dos newlines, this was more trouble than it was worth, messes up git-reports too. I have removed it. We still have a plain text version which is simple and retains most of the information.
    
• src/hg/hgGateway/hgGateway.c
  • lines changed 7, context: html, text, full: html, text
    69b427307c0ec0dcda1782182aae4b46ac50fb8e Mon Jun 6 10:31:34 2016 -0700
    Check database existence instead of just relying on dbDb.active because GBiB/GBiC may copy our dbDb, but have a limited set of species locally. fixes #17316
    
• src/hg/hgLogin/hgLogin.c
  • lines changed 1, context: html, text, full: html, text
    8072ac144242761fb980c914908b1c2697430f21 Thu Jun 9 11:35:56 2016 -0700
    Revert "Logins are case-insensitive, but cookie-checking is case-sensitive, so when making cookies, use the correctly cased userName from gbMembers. fixes #17396"
    
    This reverts commit 0ada44855b610aa826c3839e41d9b48929f86951.
    
  • lines changed 3, context: html, text, full: html, text
    ce019544af5459e5d1074720e5368a0b5dcd2d2a Thu Jun 9 11:36:00 2016 -0700
    Revert "New random-token method for login (HT Max & Galt): instead of requiring a new table gbMemberToken, use autoUpgrade to add a new column (keyList) to gbMembers that contains a list of long random keys, analogous to userDb and sessionDb's sessionKey (see cartDb.c). The token cookie now includes both gbMembers.idx (for fast lookup) and the long random key, similar to the hguid cookie and hgsid CGI param. keyList is a list in order to support user login on multiple web clients. refs #17327 #17336 note-11"
    
    This reverts commit ecd6e5bc9b85bcbafb08da0c1dae876b284ba69c.
    
  • lines changed 77, context: html, text, full: html, text
    d48e7626ab0b366e8ce43fee17366fe7d6ba6e67 Thu Jun 9 11:36:06 2016 -0700
    Revert "Several revisions to login cookie-checking after helpful code review by Max:"
    
    This reverts commit 185dbcc2ba84d6eb1301163b926ebed3177cd379.
    
  • lines changed 5, context: html, text, full: html, text
    5faaad7e4a0cde71c69f9c73db7fe94cf5db8bdc Thu Jun 9 11:42:40 2016 -0700
    Revert "Added checking of wiki.loggedInCookie (numeric user ID) using random numbers as suggested by Max"
    
    This reverts commit a240964d6dfdd6f8661487b64538d33518d88501.
    
    Conflicts:
    src/hg/hgSession/hgSession.c
    -- doSessionDetail was moved up by Jonathan's changes, so it needed to be changed to get userName the old way.
    
• src/hg/hgLogin/hgLogin.h
  • lines changed 1, context: html, text, full: html, text
    d48e7626ab0b366e8ce43fee17366fe7d6ba6e67 Thu Jun 9 11:36:06 2016 -0700
    Revert "Several revisions to login cookie-checking after helpful code review by Max:"
    
    This reverts commit 185dbcc2ba84d6eb1301163b926ebed3177cd379.
    
• src/hg/hgPublicSessions/hgPublicSessions.c
  • lines changed 68, context: html, text, full: html, text
    95433400da33b5bae4c4c8475f1305fc08510f66 Sat Jun 11 14:25:14 2016 -0700
    Store the sort/filter state of jQuery-DataTables-enabled tables in hgSession and hgPublicSessions to the cart, without including that state in saved sessions. Block IE versions before 11 from seeing the DataTables table version, due to checkbox issues. Bonus: fix for a minor session deletion bug. refs #15312, #17509
    
• src/hg/hgSession/hgSession.c
  • lines changed 63, context: html, text, full: html, text
    7339d9619c68e0758518c78e0b3564a03c3d7835 Wed Jun 8 12:06:09 2016 -0700
    Fix for flawed attempt at counting custom tracks, refs #17476
    
  • lines changed 3, context: html, text, full: html, text
    d48e7626ab0b366e8ce43fee17366fe7d6ba6e67 Thu Jun 9 11:36:06 2016 -0700
    Revert "Several revisions to login cookie-checking after helpful code review by Max:"
    
    This reverts commit 185dbcc2ba84d6eb1301163b926ebed3177cd379.
    
  • lines changed 52, context: html, text, full: html, text
    5faaad7e4a0cde71c69f9c73db7fe94cf5db8bdc Thu Jun 9 11:42:40 2016 -0700
    Revert "Added checking of wiki.loggedInCookie (numeric user ID) using random numbers as suggested by Max"
    
    This reverts commit a240964d6dfdd6f8661487b64538d33518d88501.
    
    Conflicts:
    src/hg/hgSession/hgSession.c
    -- doSessionDetail was moved up by Jonathan's changes, so it needed to be changed to get userName the old way.
    
  • lines changed 27, context: html, text, full: html, text
    95433400da33b5bae4c4c8475f1305fc08510f66 Sat Jun 11 14:25:14 2016 -0700
    Store the sort/filter state of jQuery-DataTables-enabled tables in hgSession and hgPublicSessions to the cart, without including that state in saved sessions. Block IE versions before 11 from seeing the DataTables table version, due to checkbox issues. Bonus: fix for a minor session deletion bug. refs #15312, #17509
    
• src/hg/hgTables/mainPage.c
  • lines changed 2, context: html, text, full: html, text
    cfd6179f57db3bce50099459572f9ced7369f3cb Fri Jun 10 12:07:00 2016 -0700
    When TB region=genome option is grayed out, add an explanatory note. refs #4458 notes 62, 72, 73.
    
• src/hg/hgTables/usage.c
  • lines changed 9, context: html, text, full: html, text
    61878cb225c4fafa3ba2d38af16330fbb57377ed Mon Jun 13 09:52:59 2016 -0700
    Basic documentation of tableBrowser noGenome support in TB and DI. refs #4458
    
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 2, context: html, text, full: html, text
    de15ac2542d2b375ffd780b647b3ff2e217ed6d1 Fri Jun 10 10:06:01 2016 -0700
    fix some problems in bigChain and bigMaf support #17325
    
• src/hg/hgTracks/chainTrack.c
  • lines changed 7, context: html, text, full: html, text
    851d782e10f818584974de056b992ae15d12abfd Thu Jun 9 12:27:46 2016 -0700
    make sure that bigChain custom tracks have a "linkDataUrl" #17325
    
• src/hg/hgTracks/longRangeTrack.c
  • lines changed 12, context: html, text, full: html, text
    f4a6e625d1992c8ca56a24bada941dda284a4c53 Fri Jun 10 12:24:41 2016 -0700
    draw feet in long-range mode #15232
    
• src/hg/hgTracks/wigMafTrack.c
  • lines changed 1, context: html, text, full: html, text
    3489a161f5cf1dc1eb6e3e93d262b4f4617b8c0b Thu Jun 9 11:58:36 2016 -0700
    fix a problem with bigMaf in dense when there's no data in the file #17325
    
• src/hg/hgc/hgc.c
  • lines changed 25, context: html, text, full: html, text
    f5915923089694356c860f93b6ce42a863989edd Fri Jun 10 13:54:48 2016 -0700
    get longRange hgc page to put out information about the feet #15232
    
• src/hg/hgc/mafClick.c
  • lines changed 1, context: html, text, full: html, text
    de15ac2542d2b375ffd780b647b3ff2e217ed6d1 Fri Jun 10 10:06:01 2016 -0700
    fix some problems in bigChain and bigMaf support #17325
    
• src/hg/htdocs/FAQ/FAQlicense.html
  • lines changed 2, context: html, text, full: html, text
    ef558500b66b498cad72797c305268754a6a8650 Fri Jun 10 08:34:37 2016 -0700
    Fixing typo on FAQlicense page, no redmine
    
• src/hg/htdocs/goldenPath/help/bam.html
  • lines changed 15, context: html, text, full: html, text
    1df3dcb38b1a317902c78d8a082a132681c89956 Thu Jun 9 15:01:37 2016 -0700
    modifying documentation of bam, bigBed and bigWig to highlight that
    track lines are not mandatory anymore. refs #17506
    
• src/hg/htdocs/goldenPath/help/bigBed.html
  • lines changed 19, context: html, text, full: html, text
    1df3dcb38b1a317902c78d8a082a132681c89956 Thu Jun 9 15:01:37 2016 -0700
    modifying documentation of bam, bigBed and bigWig to highlight that
    track lines are not mandatory anymore. refs #17506
    
  • lines changed 5, context: html, text, full: html, text
    7bde84863189c4896219d4178a31a5da56b595b5 Fri Jun 10 15:04:24 2016 -0700
    Adding line break for consistency among other pages Max changed, refs# 17506
    
• src/hg/htdocs/goldenPath/help/bigWig.html
  • lines changed 22, context: html, text, full: html, text
    1df3dcb38b1a317902c78d8a082a132681c89956 Thu Jun 9 15:01:37 2016 -0700
    modifying documentation of bam, bigBed and bigWig to highlight that
    track lines are not mandatory anymore. refs #17506
    
• src/hg/htdocs/goldenPath/help/hgIntegratorHelp.html
  • lines changed 14, context: html, text, full: html, text
    61878cb225c4fafa3ba2d38af16330fbb57377ed Mon Jun 13 09:52:59 2016 -0700
    Basic documentation of tableBrowser noGenome support in TB and DI. refs #4458
    
• src/hg/htdocs/goldenPath/help/hgTracksHelp.html
  • lines changed 3, context: html, text, full: html, text
    41317c5eeeea1bf48c217d6d96c5e090daf9c298 Fri Jun 10 09:46:45 2016 -0700
    updating docs with genome-asia info, refs #17401
    
• src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html
  • lines changed 6, context: html, text, full: html, text
    6f4a324fb3af25b558779378ad48fabfdde9b25d Mon Jun 6 10:21:52 2016 -0700
    Adding a paragraph about udcTimeout for enabling Blat on Assembly Hubs refs #17124
    
• src/hg/htdocs/goldenPath/help/sessions.html
  • lines changed 1, context: html, text, full: html, text
    41317c5eeeea1bf48c217d6d96c5e090daf9c298 Fri Jun 10 09:46:45 2016 -0700
    updating docs with genome-asia info, refs #17401
    
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 1, context: html, text, full: html, text
    9530b7b66ba870bd4ec5a83f9fd103f2b4510251 Mon Jun 6 11:58:05 2016 -0700
    added a little more text to describe this video, per suggestions by Cath. refs #17462
    
  • lines changed 1, context: html, text, full: html, text
    07493d23329ef45ed2c2aad89c90c9b3b4fd2c75 Mon Jun 6 15:27:41 2016 -0700
    Correcting typo, extra </p> tag in news code review refs #17486
    
• src/hg/htdocs/inc/globalNavBar.inc
  • lines changed 2, context: html, text, full: html, text
    95433400da33b5bae4c4c8475f1305fc08510f66 Sat Jun 11 14:25:14 2016 -0700
    Store the sort/filter state of jQuery-DataTables-enabled tables in hgSession and hgPublicSessions to the cart, without including that state in saved sessions. Block IE versions before 11 from seeing the DataTables table version, due to checkbox issues. Bonus: fix for a minor session deletion bug. refs #15312, #17509
    
• src/hg/htdocs/indexNews.html
  • lines changed 2, context: html, text, full: html, text
    07493d23329ef45ed2c2aad89c90c9b3b4fd2c75 Mon Jun 6 15:27:41 2016 -0700
    Correcting typo, extra </p> tag in news code review refs #17486
    
• src/hg/htdocs/style/HGStyle.css
  • lines changed 4, context: html, text, full: html, text
    95433400da33b5bae4c4c8475f1305fc08510f66 Sat Jun 11 14:25:14 2016 -0700
    Store the sort/filter state of jQuery-DataTables-enabled tables in hgSession and hgPublicSessions to the cart, without including that state in saved sessions. Block IE versions before 11 from seeing the DataTables table version, due to checkbox issues. Bonus: fix for a minor session deletion bug. refs #15312, #17509
    
• src/hg/htdocs/training/index.html
  • lines changed 1, context: html, text, full: html, text
    9530b7b66ba870bd4ec5a83f9fd103f2b4510251 Mon Jun 6 11:58:05 2016 -0700
    added a little more text to describe this video, per suggestions by Cath. refs #17462
    
• src/hg/htdocs/training/vids/index.html
  • lines changed 4, context: html, text, full: html, text
    9530b7b66ba870bd4ec5a83f9fd103f2b4510251 Mon Jun 6 11:58:05 2016 -0700
    added a little more text to describe this video, per suggestions by Cath. refs #17462
    
• src/hg/inc/autoUpgrade.h
  • lines changed 2, context: html, text, full: html, text
    ce019544af5459e5d1074720e5368a0b5dcd2d2a Thu Jun 9 11:36:00 2016 -0700
    Revert "New random-token method for login (HT Max & Galt): instead of requiring a new table gbMemberToken, use autoUpgrade to add a new column (keyList) to gbMembers that contains a list of long random keys, analogous to userDb and sessionDb's sessionKey (see cartDb.c). The token cookie now includes both gbMembers.idx (for fast lookup) and the long random key, similar to the hguid cookie and hgsid CGI param. keyList is a list in order to support user login on multiple web clients. refs #17327 #17336 note-11"
    
    This reverts commit ecd6e5bc9b85bcbafb08da0c1dae876b284ba69c.
    
• src/hg/inc/cart.h
  • lines changed 6, context: html, text, full: html, text
    95433400da33b5bae4c4c8475f1305fc08510f66 Sat Jun 11 14:25:14 2016 -0700
    Store the sort/filter state of jQuery-DataTables-enabled tables in hgSession and hgPublicSessions to the cart, without including that state in saved sessions. Block IE versions before 11 from seeing the DataTables table version, due to checkbox issues. Bonus: fix for a minor session deletion bug. refs #15312, #17509
    
• src/hg/inc/jsHelper.h
  • lines changed 12, context: html, text, full: html, text
    95433400da33b5bae4c4c8475f1305fc08510f66 Sat Jun 11 14:25:14 2016 -0700
    Store the sort/filter state of jQuery-DataTables-enabled tables in hgSession and hgPublicSessions to the cart, without including that state in saved sessions. Block IE versions before 11 from seeing the DataTables table version, due to checkbox issues. Bonus: fix for a minor session deletion bug. refs #15312, #17509
    
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    52006074179b4c6766f89a5a8861179f9d07fa1a Mon Jun 13 10:22:36 2016 -0700
    New version number v334
    
• src/hg/inc/wikiLink.h
  • lines changed 4, context: html, text, full: html, text
    ce019544af5459e5d1074720e5368a0b5dcd2d2a Thu Jun 9 11:36:00 2016 -0700
    Revert "New random-token method for login (HT Max & Galt): instead of requiring a new table gbMemberToken, use autoUpgrade to add a new column (keyList) to gbMembers that contains a list of long random keys, analogous to userDb and sessionDb's sessionKey (see cartDb.c). The token cookie now includes both gbMembers.idx (for fast lookup) and the long random key, similar to the hguid cookie and hgsid CGI param. keyList is a list in order to support user login on multiple web clients. refs #17327 #17336 note-11"
    
    This reverts commit ecd6e5bc9b85bcbafb08da0c1dae876b284ba69c.
    
  • lines changed 20, context: html, text, full: html, text
    d48e7626ab0b366e8ce43fee17366fe7d6ba6e67 Thu Jun 9 11:36:06 2016 -0700
    Revert "Several revisions to login cookie-checking after helpful code review by Max:"
    
    This reverts commit 185dbcc2ba84d6eb1301163b926ebed3177cd379.
    
  • lines changed 10, context: html, text, full: html, text
    5faaad7e4a0cde71c69f9c73db7fe94cf5db8bdc Thu Jun 9 11:42:40 2016 -0700
    Revert "Added checking of wiki.loggedInCookie (numeric user ID) using random numbers as suggested by Max"
    
    This reverts commit a240964d6dfdd6f8661487b64538d33518d88501.
    
    Conflicts:
    src/hg/hgSession/hgSession.c
    -- doSessionDetail was moved up by Jonathan's changes, so it needed to be changed to get userName the old way.
    
• src/hg/js/react/hgIntegrator/hgIntegrator.jsx
  • lines changed 9, context: html, text, full: html, text
    61878cb225c4fafa3ba2d38af16330fbb57377ed Mon Jun 13 09:52:59 2016 -0700
    Basic documentation of tableBrowser noGenome support in TB and DI. refs #4458
    
• src/hg/lib/cart.c
  • lines changed 4, context: html, text, full: html, text
    d48e7626ab0b366e8ce43fee17366fe7d6ba6e67 Thu Jun 9 11:36:06 2016 -0700
    Revert "Several revisions to login cookie-checking after helpful code review by Max:"
    
    This reverts commit 185dbcc2ba84d6eb1301163b926ebed3177cd379.
    
  • lines changed 5, context: html, text, full: html, text
    a113b1eaec149fb32d3abfe886497b33c728d4f0 Thu Jun 9 11:36:18 2016 -0700
    Revert "Oops, cartLoadUserSession is called before cartWriteCookie, so it needs to call loginSystemValidateCookies first."
    
    This reverts commit ce16fc5a8df55c02029781b267936bde5110264e.
    
  • lines changed 7, context: html, text, full: html, text
    5faaad7e4a0cde71c69f9c73db7fe94cf5db8bdc Thu Jun 9 11:42:40 2016 -0700
    Revert "Added checking of wiki.loggedInCookie (numeric user ID) using random numbers as suggested by Max"
    
    This reverts commit a240964d6dfdd6f8661487b64538d33518d88501.
    
    Conflicts:
    src/hg/hgSession/hgSession.c
    -- doSessionDetail was moved up by Jonathan's changes, so it needed to be changed to get userName the old way.
    
  • lines changed 17, context: html, text, full: html, text
    95433400da33b5bae4c4c8475f1305fc08510f66 Sat Jun 11 14:25:14 2016 -0700
    Store the sort/filter state of jQuery-DataTables-enabled tables in hgSession and hgPublicSessions to the cart, without including that state in saved sessions. Block IE versions before 11 from seeing the DataTables table version, due to checkbox issues. Bonus: fix for a minor session deletion bug. refs #15312, #17509
    
• src/hg/lib/gbMemberToken.as
  • lines changed 8, context: html, text, full: html, text
    ce019544af5459e5d1074720e5368a0b5dcd2d2a Thu Jun 9 11:36:00 2016 -0700
    Revert "New random-token method for login (HT Max & Galt): instead of requiring a new table gbMemberToken, use autoUpgrade to add a new column (keyList) to gbMembers that contains a list of long random keys, analogous to userDb and sessionDb's sessionKey (see cartDb.c). The token cookie now includes both gbMembers.idx (for fast lookup) and the long random key, similar to the hguid cookie and hgsid CGI param. keyList is a list in order to support user login on multiple web clients. refs #17327 #17336 note-11"
    
    This reverts commit ecd6e5bc9b85bcbafb08da0c1dae876b284ba69c.
    
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    ca7124f136400ff4b651eae36478d4b7190864c5 Thu Jun 9 11:36:10 2016 -0700
    Revert "adding another column to the gbMemberToken table, refs #17327"
    
    This reverts commit 6628f59edcffa5a7778f380072eeaeca09a2f742.
    
  • lines changed 7, context: html, text, full: html, text
    5faaad7e4a0cde71c69f9c73db7fe94cf5db8bdc Thu Jun 9 11:42:40 2016 -0700
    Revert "Added checking of wiki.loggedInCookie (numeric user ID) using random numbers as suggested by Max"
    
    This reverts commit a240964d6dfdd6f8661487b64538d33518d88501.
    
    Conflicts:
    src/hg/hgSession/hgSession.c
    -- doSessionDetail was moved up by Jonathan's changes, so it needed to be changed to get userName the old way.
    
• src/hg/lib/gbMemberToken.c
  • lines changed 139, context: html, text, full: html, text
    ce019544af5459e5d1074720e5368a0b5dcd2d2a Thu Jun 9 11:36:00 2016 -0700
    Revert "New random-token method for login (HT Max & Galt): instead of requiring a new table gbMemberToken, use autoUpgrade to add a new column (keyList) to gbMembers that contains a list of long random keys, analogous to userDb and sessionDb's sessionKey (see cartDb.c). The token cookie now includes both gbMembers.idx (for fast lookup) and the long random key, similar to the hguid cookie and hgsid CGI param. keyList is a list in order to support user login on multiple web clients. refs #17327 #17336 note-11"
    
    This reverts commit ecd6e5bc9b85bcbafb08da0c1dae876b284ba69c.
    
  • lines changed 139, context: html, text, full: html, text
    ca7124f136400ff4b651eae36478d4b7190864c5 Thu Jun 9 11:36:10 2016 -0700
    Revert "adding another column to the gbMemberToken table, refs #17327"
    
    This reverts commit 6628f59edcffa5a7778f380072eeaeca09a2f742.
    
• src/hg/lib/gbMemberToken.h
  • lines changed 66, context: html, text, full: html, text
    ce019544af5459e5d1074720e5368a0b5dcd2d2a Thu Jun 9 11:36:00 2016 -0700
    Revert "New random-token method for login (HT Max & Galt): instead of requiring a new table gbMemberToken, use autoUpgrade to add a new column (keyList) to gbMembers that contains a list of long random keys, analogous to userDb and sessionDb's sessionKey (see cartDb.c). The token cookie now includes both gbMembers.idx (for fast lookup) and the long random key, similar to the hguid cookie and hgsid CGI param. keyList is a list in order to support user login on multiple web clients. refs #17327 #17336 note-11"
    
    This reverts commit ecd6e5bc9b85bcbafb08da0c1dae876b284ba69c.
    
  • lines changed 66, context: html, text, full: html, text
    ca7124f136400ff4b651eae36478d4b7190864c5 Thu Jun 9 11:36:10 2016 -0700
    Revert "adding another column to the gbMemberToken table, refs #17327"
    
    This reverts commit 6628f59edcffa5a7778f380072eeaeca09a2f742.
    
• src/hg/lib/gbMemberToken.sql
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    ce019544af5459e5d1074720e5368a0b5dcd2d2a Thu Jun 9 11:36:00 2016 -0700
    Revert "New random-token method for login (HT Max & Galt): instead of requiring a new table gbMemberToken, use autoUpgrade to add a new column (keyList) to gbMembers that contains a list of long random keys, analogous to userDb and sessionDb's sessionKey (see cartDb.c). The token cookie now includes both gbMembers.idx (for fast lookup) and the long random key, similar to the hguid cookie and hgsid CGI param. keyList is a list in order to support user login on multiple web clients. refs #17327 #17336 note-11"
    
    This reverts commit ecd6e5bc9b85bcbafb08da0c1dae876b284ba69c.
    
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    ca7124f136400ff4b651eae36478d4b7190864c5 Thu Jun 9 11:36:10 2016 -0700
    Revert "adding another column to the gbMemberToken table, refs #17327"
    
    This reverts commit 6628f59edcffa5a7778f380072eeaeca09a2f742.
    
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    5faaad7e4a0cde71c69f9c73db7fe94cf5db8bdc Thu Jun 9 11:42:40 2016 -0700
    Revert "Added checking of wiki.loggedInCookie (numeric user ID) using random numbers as suggested by Max"
    
    This reverts commit a240964d6dfdd6f8661487b64538d33518d88501.
    
    Conflicts:
    src/hg/hgSession/hgSession.c
    -- doSessionDetail was moved up by Jonathan's changes, so it needed to be changed to get userName the old way.
    
• src/hg/lib/jksql.c
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    07236560bae97afc34102ff2ae4a19ea74e7a049 Wed Jun 8 17:00:49 2016 -0700
    Replacing some str* functions with safe* functions so that if there is buffer overflow, we'll errAbort instead of carrying on with unterminated strings. An undetected overflow in sqlQuickQuery caused strange behavior downstream. refs #17327 note-101
    
• src/hg/lib/jsHelper.c
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    95433400da33b5bae4c4c8475f1305fc08510f66 Sat Jun 11 14:25:14 2016 -0700
    Store the sort/filter state of jQuery-DataTables-enabled tables in hgSession and hgPublicSessions to the cart, without including that state in saved sessions. Block IE versions before 11 from seeing the DataTables table version, due to checkbox issues. Bonus: fix for a minor session deletion bug. refs #15312, #17509
    
• src/hg/lib/wikiLink.c
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    d968686107101a1824d34a007a19c8d18b368b78 Wed Jun 8 17:06:40 2016 -0700
    Limit the length of gbMembers.keyList to avoid buffer overflow (and wasted space). refs #17327 notes 98, 100, 101.
    
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    c6e8c8af66b4ea7a9df7e8cc9fc7cacb99b234a4 Thu Jun 9 11:35:42 2016 -0700
    Revert "Limit the length of gbMembers.keyList to avoid buffer overflow (and wasted space). refs #17327 notes 98, 100, 101."
    
    This reverts commit d968686107101a1824d34a007a19c8d18b368b78.
    
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    d1039b8f7028add5bb676f882c003152d50d073a Thu Jun 9 11:35:45 2016 -0700
    Revert "Fixing bug that allowed faked wiki cookie name to override hgLogin name. refs #17397 note-8, note-9."
    
    This reverts commit 70688a29ce74bb1fafd03ef2dda79ef38ea2891b.
    
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    1423f7d5003af35b06436d9c70130853ab9e7df8 Thu Jun 9 11:35:48 2016 -0700
    Revert "In order to support userNames with leading/trailing spaces, CGI-encode the userName store in the cookie, and CGI-decode before comparing it to gbMembers.userName. refs #17396 note-15, note-17"
    
    This reverts commit 5c93dde5814fddc96330bbdea7aa3f9ff374aedf.
    
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    e284653caf49c71f8eb4539b0913f6a90c817907 Thu Jun 9 11:35:53 2016 -0700
    Revert "If remote hgLogin is configured by specifying some other server in hg.conf's wiki.host, then just accept the remote host cookies with no validation. fixes #17397"
    
    This reverts commit 3c9694bc8ed2b3d835de4985b9ee7f0eebf1bfe2.
    
  • lines changed 246, context: html, text, full: html, text
    ce019544af5459e5d1074720e5368a0b5dcd2d2a Thu Jun 9 11:36:00 2016 -0700
    Revert "New random-token method for login (HT Max & Galt): instead of requiring a new table gbMemberToken, use autoUpgrade to add a new column (keyList) to gbMembers that contains a list of long random keys, analogous to userDb and sessionDb's sessionKey (see cartDb.c). The token cookie now includes both gbMembers.idx (for fast lookup) and the long random key, similar to the hguid cookie and hgsid CGI param. keyList is a list in order to support user login on multiple web clients. refs #17327 #17336 note-11"
    
    This reverts commit ecd6e5bc9b85bcbafb08da0c1dae876b284ba69c.
    
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    d48e7626ab0b366e8ce43fee17366fe7d6ba6e67 Thu Jun 9 11:36:06 2016 -0700
    Revert "Several revisions to login cookie-checking after helpful code review by Max:"
    
    This reverts commit 185dbcc2ba84d6eb1301163b926ebed3177cd379.
    
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    d8a0894d79f6d5b97797d07e0ced60ee37f528c6 Thu Jun 9 11:36:13 2016 -0700
    Revert "duh, if loginSystem is not enabled, we cannot use the gbMembers table. refs #17327"
    
    This reverts commit 46b4e2937954d44c12dcb496a140608316959d21.
    
  • lines changed 231, context: html, text, full: html, text
    5faaad7e4a0cde71c69f9c73db7fe94cf5db8bdc Thu Jun 9 11:42:40 2016 -0700
    Revert "Added checking of wiki.loggedInCookie (numeric user ID) using random numbers as suggested by Max"
    
    This reverts commit a240964d6dfdd6f8661487b64538d33518d88501.
    
    Conflicts:
    src/hg/hgSession/hgSession.c
    -- doSessionDetail was moved up by Jonathan's changes, so it needed to be changed to get userName the old way.
    
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    8b036c75c1833e62d94b3f8a3d48fcadafd8103f Thu Jun 9 11:43:37 2016 -0700
    Revert "Check idx vs database -- temporary stopgap."
    
    This reverts commit 5615ffccc75fa3e3a6b1477b696c1488a407b865.
    
• src/hg/makeDb/doc/hg19.txt
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    eeb83ec386609de45e012d085807e853db4bc80a Tue Jun 7 08:40:15 2016 -0700
    lastz runs hg19 and hg38 to orcOrc1 refs #17425
    
• src/hg/makeDb/doc/hg38/lastzRuns.txt
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    eeb83ec386609de45e012d085807e853db4bc80a Tue Jun 7 08:40:15 2016 -0700
    lastz runs hg19 and hg38 to orcOrc1 refs #17425
    
• src/hg/makeDb/doc/orcOrc1/initialBuild.txt
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    9f7a0b55376d4cc4b5dab52ed440a21f5d0d9e06 Tue Jun 7 14:05:03 2016 -0700
    in pushQ 007863 refs #17425
    
• src/hg/makeDb/doc/orcOrc1/lastzRuns.txt
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    29bafd43f3698c8c1a01760e0b397dd76d91abfb Mon Jun 6 14:05:23 2016 -0700
    lastz runs for oviAri3 and turTru2 to orcOrc1 refs #17425
    
• src/hg/makeDb/outside/gtexHub/hub/gtexHub.html
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    4002aeddb0c3a50627cef8ba406a8167f6cc4454 Mon Jun 6 15:11:13 2016 -0700
    Change contact for description page as per AnnZ. refs #15647
    
• src/hg/makeDb/trackDb/human/hg38/centromeres.html
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    2cb6344c23924193c7d459410a5260800f9b341a Wed Jun 8 16:38:17 2016 -0700
    Fixing html errors found by hgTablesTest which runs html checker on the description pages.
    
• src/hg/makeDb/trackDb/human/hg38/cons20way.html
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    2cb6344c23924193c7d459410a5260800f9b341a Wed Jun 8 16:38:17 2016 -0700
    Fixing html errors found by hgTablesTest which runs html checker on the description pages.
    
• src/hg/makeDb/trackDb/human/hg38/hg38Patch7.ra
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    d2846a2412c4882d4c3329bed96c4b13cdc19f12 Mon Jun 6 12:16:53 2016 -0700
    adding hg38Patchy7 refs #13673
    
• src/hg/makeDb/trackDb/human/hg38/knownGene.html
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    2cb6344c23924193c7d459410a5260800f9b341a Wed Jun 8 16:38:17 2016 -0700
    Fixing html errors found by hgTablesTest which runs html checker on the description pages.
    
• src/hg/makeDb/trackDb/trackDb.ra
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    22990d399a26d11688656954fcfc4fa0ddb942a6 Mon Jun 6 12:13:47 2016 -0700
    default viz for NCBI RefSeq vs UCSC refGene refs #13673
    
• src/hg/utils/automation/configFiles/ancCey1.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/aptMan1.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/aquChr2.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/ascSuu1.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/bisBis1.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/bruMal2.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/burXyl1.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/caeAng2.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/caeSp51.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/ce11.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/chlSab2.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/ci3.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/dirImm1.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/dm6.config.ra
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    83fc1f5f3442c2a3924fcc234aeaa29056adacfc Mon Jun 13 10:04:55 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/galGal5.config.ra
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    83fc1f5f3442c2a3924fcc234aeaa29056adacfc Mon Jun 13 10:04:55 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/galVar1.config.ra
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    83fc1f5f3442c2a3924fcc234aeaa29056adacfc Mon Jun 13 10:04:55 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/gorGor4.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/haeCon2.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/hetBac1.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/loaLoa1.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/manPen1.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
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• src/hg/utils/automation/configFiles/melInc2.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
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• src/hg/utils/automation/configFiles/micMur2.config.ra
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• src/hg/utils/automation/configFiles/nanPar1.config.ra
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• src/hg/utils/automation/configFiles/necAme1.config.ra
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• src/hg/utils/automation/configFiles/oncVol1.config.ra
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• src/hg/utils/automation/configFiles/orcOrc1.config.ra
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• src/hg/utils/automation/configFiles/ornAna2.config.ra
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• src/hg/utils/automation/configFiles/oxyTri2.config.ra
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• src/hg/utils/automation/configFiles/panPan2.config.ra
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• src/hg/utils/automation/configFiles/panRed1.config.ra
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• src/hg/utils/automation/configFiles/ponAbe3.config.ra
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• src/hg/utils/automation/configFiles/priExs1.config.ra
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• src/hg/utils/automation/configFiles/priPac3.config.ra
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    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
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• src/hg/utils/automation/configFiles/rheMac8.config.ra
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    83fc1f5f3442c2a3924fcc234aeaa29056adacfc Mon Jun 13 10:04:55 2016 -0700
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• src/hg/utils/automation/configFiles/rhiRox1.config.ra
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    83fc1f5f3442c2a3924fcc234aeaa29056adacfc Mon Jun 13 10:04:55 2016 -0700
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• src/hg/utils/automation/configFiles/rouAeg1.config.ra
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    83fc1f5f3442c2a3924fcc234aeaa29056adacfc Mon Jun 13 10:04:55 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/strRat1.config.ra
  • lines changed 23, context: html, text, full: html, text
    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/strRat2.config.ra
  • lines changed 23, context: html, text, full: html, text
    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/thaSir1.config.ra
  • lines changed 23, context: html, text, full: html, text
    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/triSpi1.config.ra
  • lines changed 23, context: html, text, full: html, text
    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/automation/configFiles/triSui1.config.ra
  • lines changed 23, context: html, text, full: html, text
    fd031f1b5f30559e6cabe07619062fabe86fa2e6 Mon Jun 13 09:52:00 2016 -0700
    catching up to new browser build config files refs #17457
    
• src/hg/utils/gff3ToGenePred/gff3ToGenePred.c
  • lines changed 3, context: html, text, full: html, text
    519c9ff3d74a3c56e6c4eb0253b9606c7b196618 Thu Jun 9 18:40:08 2016 -0700
    make more robust by using isEmpty to test for NULL or empty string
    
• src/hg/utils/makeTableList/makeTableList.c
  • lines changed 1, context: html, text, full: html, text
    bfbe7be73c10fe287c484769f0467660af853a23 Thu Jun 9 16:49:09 2016 -0700
    adding proteom to makeTableList utility to fix a gbib bug, refs #17424
    
• src/hg/utils/tdbQuery/tdbQuery.c
  • lines changed 100, context: html, text, full: html, text
    5f552f1a0ee9b190c5c88434da3327c323afc797 Wed Jun 8 14:26:20 2016 -0700
    Moving bits of tdbQuery that checked for fields not existing in a query statement to rqlParse.c, and making cdwQuery do this check as well.
    
• src/inc/obscure.h
  • lines changed 3, context: html, text, full: html, text
    faa36478617263d289e1edd79d8d941c36c4dd8c Wed Jun 8 14:30:46 2016 -0700
    Adding ensureNamesCaseUnique library function to check for symbol conflicts in a case-insensitive way giving a symbol list. This is used to precheck when defining a SQL table from a tagStorm, since tagStorm is case sensitive but SQL is not.
    
• src/inc/rql.h
  • lines changed 8, context: html, text, full: html, text
    5f552f1a0ee9b190c5c88434da3327c323afc797 Wed Jun 8 14:26:20 2016 -0700
    Moving bits of tdbQuery that checked for fields not existing in a query statement to rqlParse.c, and making cdwQuery do this check as well.
    
• src/lib/common.c
  • lines changed 3, context: html, text, full: html, text
    ce019544af5459e5d1074720e5368a0b5dcd2d2a Thu Jun 9 11:36:00 2016 -0700
    Revert "New random-token method for login (HT Max & Galt): instead of requiring a new table gbMemberToken, use autoUpgrade to add a new column (keyList) to gbMembers that contains a list of long random keys, analogous to userDb and sessionDb's sessionKey (see cartDb.c). The token cookie now includes both gbMembers.idx (for fast lookup) and the long random key, similar to the hguid cookie and hgsid CGI param. keyList is a list in order to support user login on multiple web clients. refs #17327 #17336 note-11"
    
    This reverts commit ecd6e5bc9b85bcbafb08da0c1dae876b284ba69c.
    
• src/lib/htmlPage.c
  • lines changed 1, context: html, text, full: html, text
    a39cf17bd648ebf89f823e6a32ea9edae1ec82b6 Wed May 25 15:50:23 2016 -0700
    Improving error message.
    
• src/lib/obscure.c
  • lines changed 28, context: html, text, full: html, text
    faa36478617263d289e1edd79d8d941c36c4dd8c Wed Jun 8 14:30:46 2016 -0700
    Adding ensureNamesCaseUnique library function to check for symbol conflicts in a case-insensitive way giving a symbol list. This is used to precheck when defining a SQL table from a tagStorm, since tagStorm is case sensitive but SQL is not.
    
• src/lib/rqlParse.c
  • lines changed 102, context: html, text, full: html, text
    5f552f1a0ee9b190c5c88434da3327c323afc797 Wed Jun 8 14:26:20 2016 -0700
    Moving bits of tdbQuery that checked for fields not existing in a query statement to rqlParse.c, and making cdwQuery do this check as well.
    
• src/product/installer/README.md
  • lines changed 17, context: html, text, full: html, text
    66a160d0d3c9f14b4ad8fbdba274128e57fa98eb Mon Jun 6 10:21:22 2016 -0700
    Adding obfuscated email, editing help message to match script help message, refs #14399
    
• src/product/installer/browserSetup.sh
  • lines changed 10, context: html, text, full: html, text
    52df8c338b9dd6330a48ae2e883559aa47f267e1 Wed Jun 8 09:34:57 2016 -0700
    imagemagick changes, refs #1263
    
  • lines changed 2, context: html, text, full: html, text
    570d73af557662a44ed043af2acc4b65af3824a7 Wed Jun 8 13:08:52 2016 -0700
    fixing gbic bug for imagegick, refs #1263
    
  • lines changed 20, context: html, text, full: html, text
    a465fa83c9c36d18e1f96783268b1f48d15c8483 Wed Jun 8 16:48:19 2016 -0700
    another try to fix the imagemagick gbic problem, refs #1263
    
• src/product/mirrorManual.txt
  • lines changed 1280, context: html, text, full: html, text
    0eb443c64f5794221aa852515bd9307832179c2b Mon Jun 6 16:47:11 2016 -0700
    committing a single big doc file that explains how to install a mirror.
    This is just a manually reformatted concatenated version of the various
    README files in the src/product/ directory in markdown format.
    
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    4fc4604bdc99bd3541f9d2dddb2cd2cfdd0073f7 Mon Jun 13 10:21:37 2016 -0700
    v334 final build refs #17457
    

• lines changed: 4864
• files changed: 153