All File Changes

v347_base to v348_preview (2017-04-03 to 2017-04-10) v348

• src/hg/featureBits/featureBits.c
  • lines changed 5, context: html, text, full: html, text
    b9e6acf3e5397b6be14a3071198e5aff2105f88f Mon Apr 3 13:07:47 2017 -0700
    featureBits usage message now says it will contact database for gap sizes unless -countGaps is specified
• src/hg/hgCustom/hgCustom.c
  • lines changed 4, context: html, text, full: html, text
    ca001361fc433fbacc4805265af7110c8b24a9bb Tue Apr 4 12:28:38 2017 -0700
    code cleanup from CSP changes.
• src/hg/hgGtexTrackSettings/hgGtexTrackSettings.c
  • lines changed 13, context: html, text, full: html, text
    661ed410515150835be535b6a3563d784e878fe3 Thu Feb 9 16:42:34 2017 -0800
    Add GO button to Configuration subsection (next to vis dropdown), as per request by B0b. refs #18556
  • lines changed 47, context: html, text, full: html, text
    774cdab50f95e18aad73b455a907158c44f76f9e Mon Apr 3 16:49:52 2017 -0700
    Fix twitchy layout of vis drop-down (lose bolding of Go, seemed a bit excessive anyway). Add pointer cursor to drop-down while the hood is up. refs #18556
• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 6, context: html, text, full: html, text
    84881cd63a7a22436c8f6915a9b587941e923f73 Wed Apr 5 15:52:22 2017 -0700
    check hgdownload for public.ix if not stored locally
• src/hg/hgMenubar/hgMenubar.c
  • lines changed 2, context: html, text, full: html, text
    f54e5654ffc1ece8ed6dfc65fa14a97b5379170f Fri Apr 7 10:15:33 2017 -0700
    Omitting extraneous (and erroneous) content header, thanks Max
  • lines changed 2, context: html, text, full: html, text
    2ef4a62800008fee49d817b5fd5fb0f5dea5730b Fri Apr 7 10:17:41 2017 -0700
    Erroneous, but not extraneous. Line re-added to hgMenuBar output. :)
• src/hg/hgTables/hgTables.c
  • lines changed 1, context: html, text, full: html, text
    a13f7abae98ad53f44f0ad3836a29a4b84ef39e0 Wed Apr 5 14:04:41 2017 -0700
    Add htmlClose() after position lookup failure so that jsInlineFinish is called and the warning message is displayed to the user. fixes #19190
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 1, context: html, text, full: html, text
    ca001361fc433fbacc4805265af7110c8b24a9bb Tue Apr 4 12:28:38 2017 -0700
    code cleanup from CSP changes.
• src/hg/hgTracks/hgTracks.c
  • lines changed 13, context: html, text, full: html, text
    7340e66cb860fa73cc651af31eb8fda2b668cb0d Wed Apr 5 11:41:31 2017 -0700
    Modifying zoom dialog box so one does not have to see it by using the modifier keys Alt or Ctrl/Cmd. Also allowing user to choose a color for the highlight and allowing to delete all highlights in the View menu. refs #19118
• src/hg/hgTracks/hgTracks.h
  • lines changed 2, context: html, text, full: html, text
    7340e66cb860fa73cc651af31eb8fda2b668cb0d Wed Apr 5 11:41:31 2017 -0700
    Modifying zoom dialog box so one does not have to see it by using the modifier keys Alt or Ctrl/Cmd. Also allowing user to choose a color for the highlight and allowing to delete all highlights in the View menu. refs #19118
• src/hg/hgTracks/menu.c
  • lines changed 2, context: html, text, full: html, text
    7340e66cb860fa73cc651af31eb8fda2b668cb0d Wed Apr 5 11:41:31 2017 -0700
    Modifying zoom dialog box so one does not have to see it by using the modifier keys Alt or Ctrl/Cmd. Also allowing user to choose a color for the highlight and allowing to delete all highlights in the View menu. refs #19118
• src/hg/hgc/hgc.c
  • lines changed 1, context: html, text, full: html, text
    6983526d91951c0a7b7c2be598aeda56891f07d8 Wed Apr 5 12:15:41 2017 -0700
    Revert "don't do fancy indel display with custom blat tracks" This reverts commit ab0e825a8d803a2fe12374a6ed834199080ab109.
  • lines changed 1, context: html, text, full: html, text
    14de03254c905b470cb8b5a5c3fb01172ca006e3 Wed Apr 5 14:49:07 2017 -0700
    add extra options to custom blat display (indelPolyA, etc..)
  • lines changed 2, context: html, text, full: html, text
    ed16fa412c2b0d65563bd277e3bc64d7e8c5d4a1 Wed Apr 5 15:12:20 2017 -0700
    oops... only turn indelPolyA on for DNA alignments in custom BLAT tracks
  • lines changed 1, context: html, text, full: html, text
    77e41af608d71f2d42cb7fff9794b1aec9fdea0d Wed Apr 5 15:49:01 2017 -0700
    fix message
• src/hg/htdocs/ENCODE/releaseLog.html
  • lines changed 1, context: html, text, full: html, text
    c91ab6c91c8d925ddb646da4a3a1a9bea486be86 Fri Apr 7 14:19:45 2017 -0700
    pointing our Jobs links in footers and top menu bar to the new Careers page at the GI site
• src/hg/htdocs/FAQ/FAQdownloads.html
  • lines changed 1, context: html, text, full: html, text
    6abac737cbfb365d320d1dce7bb5926b74943d11 Wed Apr 5 09:55:18 2017 -0700
    Fixing broken anchor link in downloads FAQ
• src/hg/htdocs/FAQ/FAQlink.html
  • lines changed 16, context: html, text, full: html, text
    e440b893ee978f8f5e3bdb9c6f544fb999538bc4 Wed Mar 15 14:21:20 2017 -0700
    Moved the See also links below the separator bar in TOC section.
• src/hg/htdocs/Neandertal/index.html
  • lines changed 1, context: html, text, full: html, text
    c91ab6c91c8d925ddb646da4a3a1a9bea486be86 Fri Apr 7 14:19:45 2017 -0700
    pointing our Jobs links in footers and top menu bar to the new Careers page at the GI site
• src/hg/htdocs/contacts.html
  • lines changed 1, context: html, text, full: html, text
    d6a104273b5e936c526ddd8b051f683cfab2015e Tue Apr 4 11:58:36 2017 -0700
    fixed typo
• src/hg/htdocs/goldenPath/help/customTrackText.html
  • lines changed 2, context: html, text, full: html, text
    f58847fb6429f35da2ab11bf638d7a7ca207cf4c Mon Apr 3 15:02:15 2017 -0700
    Added a tag for Example 11, which is referenced from several other docs.
• src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html
  • lines changed 10, context: html, text, full: html, text
    13e2fc5ebc8d7e5ebb318df8ea46e50d61505222 Mon Apr 3 15:19:24 2017 -0700
    Edited a few bits of text for readability.
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 21, context: html, text, full: html, text
    35d0fd49f297accfefd3d0f07b43dc5601e0f493 Mon Mar 20 14:45:05 2017 -0700
    Made a few minor edits to text and format.
  • lines changed 20, context: html, text, full: html, text
    44ad9e3d422dd1b770dcd11baf138056fc241a4d Wed Mar 22 13:13:21 2017 -0700
    Did a bit of wordsmithing and format fixing.
• src/hg/htdocs/goldenPath/releaseLogOld.html
  • lines changed 1, context: html, text, full: html, text
    c91ab6c91c8d925ddb646da4a3a1a9bea486be86 Fri Apr 7 14:19:45 2017 -0700
    pointing our Jobs links in footers and top menu bar to the new Careers page at the GI site
• src/hg/htdocs/inc/gbFooter.html
  • lines changed 1, context: html, text, full: html, text
    c91ab6c91c8d925ddb646da4a3a1a9bea486be86 Fri Apr 7 14:19:45 2017 -0700
    pointing our Jobs links in footers and top menu bar to the new Careers page at the GI site
• src/hg/htdocs/inc/gbsFooter.html
  • lines changed 1, context: html, text, full: html, text
    c91ab6c91c8d925ddb646da4a3a1a9bea486be86 Fri Apr 7 14:19:45 2017 -0700
    pointing our Jobs links in footers and top menu bar to the new Careers page at the GI site
• src/hg/htdocs/inc/globalNavBar.inc
  • lines changed 1, context: html, text, full: html, text
    c91ab6c91c8d925ddb646da4a3a1a9bea486be86 Fri Apr 7 14:19:45 2017 -0700
    pointing our Jobs links in footers and top menu bar to the new Careers page at the GI site
• src/hg/htdocs/inc/jWestFooter.html
  • lines changed 1, context: html, text, full: html, text
    c91ab6c91c8d925ddb646da4a3a1a9bea486be86 Fri Apr 7 14:19:45 2017 -0700
    pointing our Jobs links in footers and top menu bar to the new Careers page at the GI site
• src/hg/htdocs/style/gb.css
  • lines changed 5, context: html, text, full: html, text
    774cdab50f95e18aad73b455a907158c44f76f9e Mon Apr 3 16:49:52 2017 -0700
    Fix twitchy layout of vis drop-down (lose bolding of Go, seemed a bit excessive anyway). Add pointer cursor to drop-down while the hood is up. refs #18556
• src/hg/htdocs/style/makefile
  • lines changed 1, context: html, text, full: html, text
    1ba1c23fae4f19e26c68ee33fbd74877dee543db Wed Apr 5 16:04:01 2017 -0700
    adding makefile for style file I forgot in last commit, thx to Angie/Brian, refs #19118
• src/hg/htdocs/style/spectrum.min.css
  • lines changed 1, context: html, text, full: html, text
    91fcdfd53023caab91d0f9670267d66add71cea7 Wed Apr 5 13:01:19 2017 -0700
    forgot css for the new color picker in last commit, refs #19118
• src/hg/htdocs/training/index.html
  • lines changed 13, context: html, text, full: html, text
    385bae5fbd793e476e7c469a6f2ba3d9b1ff9c96 Tue Apr 4 20:48:15 2017 -0700
    fixing punctuation inside of link error. Refs #19178
• src/hg/inc/hPrint.h
  • lines changed 3, context: html, text, full: html, text
    ca001361fc433fbacc4805265af7110c8b24a9bb Tue Apr 4 12:28:38 2017 -0700
    code cleanup from CSP changes.
• src/hg/js/autocomplete.js
  • lines changed 1, context: html, text, full: html, text
    66b54e4201d100beff80b786ac2964f383d2b99e Wed Apr 5 16:31:05 2017 -0700
    Adding HGVS to hgTracks position/search box watermark, thx Max for suggesting.
• src/hg/js/hgTracks.js
  • lines changed 149, context: html, text, full: html, text
    7340e66cb860fa73cc651af31eb8fda2b668cb0d Wed Apr 5 11:41:31 2017 -0700
    Modifying zoom dialog box so one does not have to see it by using the modifier keys Alt or Ctrl/Cmd. Also allowing user to choose a color for the highlight and allowing to delete all highlights in the View menu. refs #19118
• src/hg/js/jquery.imgareaselect.js
  • lines changed 5, context: html, text, full: html, text
    7340e66cb860fa73cc651af31eb8fda2b668cb0d Wed Apr 5 11:41:31 2017 -0700
    Modifying zoom dialog box so one does not have to see it by using the modifier keys Alt or Ctrl/Cmd. Also allowing user to choose a color for the highlight and allowing to delete all highlights in the View menu. refs #19118
• src/hg/js/makefile
  • lines changed 1, context: html, text, full: html, text
    7340e66cb860fa73cc651af31eb8fda2b668cb0d Wed Apr 5 11:41:31 2017 -0700
    Modifying zoom dialog box so one does not have to see it by using the modifier keys Alt or Ctrl/Cmd. Also allowing user to choose a color for the highlight and allowing to delete all highlights in the View menu. refs #19118
• src/hg/js/spectrum.min.js
  • lines changed 4, context: html, text, full: html, text
    7340e66cb860fa73cc651af31eb8fda2b668cb0d Wed Apr 5 11:41:31 2017 -0700
    Modifying zoom dialog box so one does not have to see it by using the modifier keys Alt or Ctrl/Cmd. Also allowing user to choose a color for the highlight and allowing to delete all highlights in the View menu. refs #19118
• src/hg/lib/hAnno.c
  • lines changed 1, context: html, text, full: html, text
    7495791f0d935716eb5a6231e11ba833ef327aed Thu Apr 6 10:21:25 2017 -0700
    Oops, forgot to implement maxOutRows for annoStreamTab! Thx Chris Lee. refs #12216
• src/hg/lib/hPrint.c
  • lines changed 7, context: html, text, full: html, text
    ca001361fc433fbacc4805265af7110c8b24a9bb Tue Apr 4 12:28:38 2017 -0700
    code cleanup from CSP changes.
• src/hg/lib/hui.c
  • lines changed 1, context: html, text, full: html, text
    ca001361fc433fbacc4805265af7110c8b24a9bb Tue Apr 4 12:28:38 2017 -0700
    code cleanup from CSP changes.
  • lines changed 60, context: html, text, full: html, text
    760d941586a240c1b4c4e1143f1fd2a3f8ff96c1 Fri Apr 7 11:26:45 2017 -0700
    add the ability to specify a fielded tab-sep file for metadata in a track hub
• src/hg/lib/tests/annoGratorTester.c
  • lines changed 1, context: html, text, full: html, text
    7495791f0d935716eb5a6231e11ba833ef327aed Thu Apr 6 10:21:25 2017 -0700
    Oops, forgot to implement maxOutRows for annoStreamTab! Thx Chris Lee. refs #12216
• src/hg/lib/trackHub.c
  • lines changed 7, context: html, text, full: html, text
    760d941586a240c1b4c4e1143f1fd2a3f8ff96c1 Fri Apr 7 11:26:45 2017 -0700
    add the ability to specify a fielded tab-sep file for metadata in a track hub
• src/hg/makeDb/doc/anoCar2.txt
  • lines changed 26, context: html, text, full: html, text
    5ee79e13be1adbd62760be8cc2a3db56b164931e Thu Apr 6 20:32:09 2017 -0700
    lastz chainNet xenTro9 anoCar2 refs #19151
• src/hg/makeDb/doc/canFam3.txt
  • lines changed 70, context: html, text, full: html, text
    d7d769af42570ced6c8f540e7b94bd412e301e12 Thu Apr 6 20:30:18 2017 -0700
    lastz chainNet xenTro9 canFam3 refs #19151
• src/hg/makeDb/doc/chrPic2.txt
  • lines changed 24, context: html, text, full: html, text
    4d7fe3f615a497c113a3aa18bdfc328a70957235 Thu Apr 6 20:31:21 2017 -0700
    lastz chainNet mm10 chrPic2 refs #13166
• src/hg/makeDb/doc/fr3.txt
  • lines changed 26, context: html, text, full: html, text
    0209fe937bf22f43e6e099a9e1a6856714729067 Thu Apr 6 20:34:53 2017 -0700
    lastz chainNet xenTro9 fr3 refs #19151
• src/hg/makeDb/doc/hg19.txt
  • lines changed 4, context: html, text, full: html, text
    c4b03f437ed4c7c0c13cac9fdc5ac0426da659cd Mon Apr 3 16:21:47 2017 -0700
    Noting that a couple jobs left running have completed.
• src/hg/makeDb/doc/mm10.txt
  • lines changed 2, context: html, text, full: html, text
    5290369a3f23b31f2467cbfe12d86cd89a1d5d3c Wed Apr 5 10:13:58 2017 -0700
    finished lastz chainNet to frog xenLae2 refs #17435
  • lines changed 71, context: html, text, full: html, text
    4d7fe3f615a497c113a3aa18bdfc328a70957235 Thu Apr 6 20:31:21 2017 -0700
    lastz chainNet mm10 chrPic2 refs #13166
• src/hg/makeDb/doc/monDom5.txt
  • lines changed 61, context: html, text, full: html, text
    9df328e8dedaffdc13e0bef82d9a717d0a9689ee Thu Apr 6 20:29:50 2017 -0700
    lastz chainNet xenTro9 monDom5 refs #19151
• src/hg/makeDb/doc/xenLae2/initialBuild.txt
  • lines changed 30, context: html, text, full: html, text
    751f1bcf592d02e48b941f06320fe73d640b3c4c Wed Apr 5 10:15:08 2017 -0700
    done with genbank run and lastz mm10 hg38 and default position set refs #17435
• src/hg/makeDb/doc/xenTro9/lastzRuns.txt
  • lines changed 266, context: html, text, full: html, text
    ed0af0847625a744ec3082b9a94694850acf9c53 Thu Apr 6 20:33:19 2017 -0700
    lastz chainNet xenTro9 to xenLae2 galGal5 fr3 anoCar2 canFam3 refs #19151
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    3715cfbc6229c5ebb79a22bb73eb39add7b1e14a Wed Apr 5 09:49:10 2017 -0700
    adding xenLae2 to the update alignments refs #17435
• src/hg/makeDb/genbank/etc/hgwbeta.dbs
  • lines changed 1, context: html, text, full: html, text
    9fa60ee57d5433c2032813012afb726ea197a3fe Fri Apr 7 11:02:40 2017 -0700
    Turning on genbank updates for nanPar1 on hgwbeta, refs #15056
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 1, context: html, text, full: html, text
    3715cfbc6229c5ebb79a22bb73eb39add7b1e14a Wed Apr 5 09:49:10 2017 -0700
    adding xenLae2 to the update alignments refs #17435
• src/hg/makeDb/trackDb/alpaca/vicPac1/description.html
  • lines changed 2, context: html, text, full: html, text
    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/alpaca/vicPac2/description.html
  • lines changed 2, context: html, text, full: html, text
    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/alpaca/vicVic1/description.html
  • lines changed 2, context: html, text, full: html, text
    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/ancestor/homIni20/description.html
  • lines changed 2, context: html, text, full: html, text
    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/ancestor/homPan20/description.html
  • lines changed 2, context: html, text, full: html, text
    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/anopheles/anoGam1/description.html
  • lines changed 2, context: html, text, full: html, text
    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/apis/apiMel1/description.html
  • lines changed 2, context: html, text, full: html, text
    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/apis/apiMel2/description.html
  • lines changed 2, context: html, text, full: html, text
    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/armadillo/dasNov2/description.html
  • lines changed 2, context: html, text, full: html, text
    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/armadillo/dasNov3/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/baboon/papAnu2/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/baboon/papHam1/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/balAcu/balAcu1/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/bats/rouAeg1/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/birds/amaVit1/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/birds/aptMan1/description.html
  • lines changed 2, context: html, text, full: html, text
    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/birds/aquChr2/description.html
  • lines changed 2, context: html, text, full: html, text
    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/birds/geoFor1/description.html
  • lines changed 2, context: html, text, full: html, text
    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/birds/melUnd1/description.html
  • lines changed 2, context: html, text, full: html, text
    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/bison/bisBis1/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/bonobo/panPan1/description.html
  • lines changed 2, context: html, text, full: html, text
    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
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    6e9edd2772f93fde239e5a2bca2a9fcd8fe3f8ec Thu Apr 6 12:56:46 2017 -0700
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
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• src/hg/makeDb/trackDb/xenTro/xenTro9/description.html
  • lines changed 2, context: html, text, full: html, text
    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/xenTro/xenTro9/trackDb.chainNet.ra
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    791e00b122641b5cee357a2af218f5fbcee16daa Thu Apr 6 13:56:29 2017 -0700
    adding chainNet overrides refs #19151
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    497eba07a57f115518b245a76788731bd3306ac4 Fri Apr 7 22:16:42 2017 -0700
    adding chrPic2, monDom5 and canFam3 overrides refs #19151
• src/hg/makeDb/trackDb/xenTro/xenTro9/trackDb.ra
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    791e00b122641b5cee357a2af218f5fbcee16daa Thu Apr 6 13:56:29 2017 -0700
    adding chainNet overrides refs #19151
• src/hg/makeDb/trackDb/zebraFinch/taeGut1/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/zebraFinch/taeGut2/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/zebrafish/danRer1/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/zebrafish/danRer10/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/zebrafish/danRer2/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/zebrafish/danRer3/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/zebrafish/danRer4/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/zebrafish/danRer5/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/zebrafish/danRer6/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/makeDb/trackDb/zebrafish/danRer7/description.html
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    2b1c3b83cd32e66c568b6cd4c39123f7faa13cd7 Thu Apr 6 16:58:51 2017 -0700
    trackDb description.html pages, changing hgdownload.cse.ucsc.edu to soe, refs #19134
• src/hg/utils/automation/asmHubGatewayPage.pl
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    c7c10224861dc80c730e5cd32126473538f420da Fri Apr 7 08:56:55 2017 -0700
    changing cse.ucsc.edu to soe.ucsc.edu references refs #19134
• src/hg/utils/automation/asmHubRmsk.pl
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    c7c10224861dc80c730e5cd32126473538f420da Fri Apr 7 08:56:55 2017 -0700
    changing cse.ucsc.edu to soe.ucsc.edu references refs #19134
• src/hg/utils/automation/doBlastzChainNet.pl
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    c7c10224861dc80c730e5cd32126473538f420da Fri Apr 7 08:56:55 2017 -0700
    changing cse.ucsc.edu to soe.ucsc.edu references refs #19134
• src/hg/utils/automation/doDbSnpMaskSequence.pl
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    c7c10224861dc80c730e5cd32126473538f420da Fri Apr 7 08:56:55 2017 -0700
    changing cse.ucsc.edu to soe.ucsc.edu references refs #19134
• src/hg/utils/automation/makeDownloads.pl
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    c7c10224861dc80c730e5cd32126473538f420da Fri Apr 7 08:56:55 2017 -0700
    changing cse.ucsc.edu to soe.ucsc.edu references refs #19134
• src/hg/utils/automation/makeGenomeDb.pl
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    c7c10224861dc80c730e5cd32126473538f420da Fri Apr 7 08:56:55 2017 -0700
    changing cse.ucsc.edu to soe.ucsc.edu references refs #19134
• src/inc/annoStreamTab.h
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    7495791f0d935716eb5a6231e11ba833ef327aed Thu Apr 6 10:21:25 2017 -0700
    Oops, forgot to implement maxOutRows for annoStreamTab! Thx Chris Lee. refs #12216
• src/inc/cheapcgi.h
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    ca001361fc433fbacc4805265af7110c8b24a9bb Tue Apr 4 12:28:38 2017 -0700
    code cleanup from CSP changes.
• src/lib/annoStreamTab.c
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    7495791f0d935716eb5a6231e11ba833ef327aed Thu Apr 6 10:21:25 2017 -0700
    Oops, forgot to implement maxOutRows for annoStreamTab! Thx Chris Lee. refs #12216
• src/lib/cheapcgi.c
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    ca001361fc433fbacc4805265af7110c8b24a9bb Tue Apr 4 12:28:38 2017 -0700
    code cleanup from CSP changes.
• src/lib/fieldedTable.c
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    760d941586a240c1b4c4e1143f1fd2a3f8ff96c1 Fri Apr 7 11:26:45 2017 -0700
    add the ability to specify a fielded tab-sep file for metadata in a track hub
• src/lib/udc.c
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    7d1ac36f32f35df5b49c007b072af2784c305159 Thu Apr 6 15:06:11 2017 -0700
    add missing #ifdef USE_SSL
• src/product/scripts/fetchCramReference.sh
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    ec10e1d6a06631709bb00bcff1ad6eaf987dd348 Fri Apr 7 12:16:17 2017 -0700
    fetchCramReference.sh now correctly increments try count on server error
• src/utils/qa/getPubHubContact.sh
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    6a56036fe0b6115f872813ff07733f0bda7e785f Thu Apr 6 16:39:22 2017 -0700
    Script was producing truncated files because these lines could fail causing it to quit early. Made it so these lines always come back with zero return code, #18316
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    3330c7deec180bf7ca82a38455c77ee04b51a73f Fri Apr 7 07:05:46 2017 -0700
    removing testing echo statement, no redmine
• src/utils/qa/weeklybld/buildEnv.csh
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    c4f5bf4fa1bebee3e3cffc09af86701281ebdc31 Mon Apr 10 10:10:31 2017 -0700
    v348 preview1 refs #19120

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