All File Changes

v370_base to v371_preview (2018-08-20 to 2018-08-27) v371

• src/browserbox/README.txt
  • lines changed 28, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 28, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/home/browser/.bashrc
  • lines changed 6, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
  • lines changed 7, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 7, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/home/browser/.hg.conf
  • lines changed 3, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
  • lines changed 4, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 4, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/home/browser/downloadTools
  • lines changed 1, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
  • lines changed 1, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 1, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/home/browser/gbibAddTools
  • lines changed 1, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
  • lines changed 1, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 1, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/root/addTools
  • lines changed 2, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 2, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/root/browserLogs/scripts/virtualBox.txt
  • lines changed 3, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/browserbox/root/hg.conf.offline
  • lines changed 3, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
  • lines changed 4, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 4, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/root/mirrorTrack
  • lines changed 1, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
  • lines changed 1, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 1, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/root/updateBrowser.sh
  • lines changed 8, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
  • lines changed 14, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 14, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/root/urlIsNotNewerThanFile
  • lines changed 1, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
  • lines changed 1, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 1, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/usr/local/apache/cgi-bin/hg.conf
  • lines changed 3, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
  • lines changed 4, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 4, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/var/spool/cron/crontabs/root
  • lines changed 2, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
  • lines changed 2, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 2, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/gfServer/README.blat
  • lines changed 3, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hca/toHca/hcaStormToBundles/testIt
  • lines changed 1, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hg/cirm/cdw/cdwSummary/cdwSummary
  • lines changed 1, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hg/das/tests/makefile
  • lines changed 2, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hg/encode/encodeCharts/encodeReportLib.py
  • lines changed 1, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl
  • lines changed 3, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hg/encode/encodeQaCheckHgdownloadFiles/encodeQaCheckHgdownloadFiles
  • lines changed 3, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hg/encode/encodeQaInit/encodeQaInit
  • lines changed 2, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hg/encode/encodeStatus/hgShowEncodeSubmissions
  • lines changed 1, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hg/encode/encodeValidate/newtest/config/cv.ra
  • lines changed 2, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hg/encode/encodeValidate/test/makefile
  • lines changed 1, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hg/encode/hgEncodeSubmit/README.FTP
  • lines changed 3, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hg/encode/hgEncodeSubmit/test/functional/account_controller_test.rb
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    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hg/encode/hgEncodeSubmit/test/unit/user_test.rb
  • lines changed 1, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hg/geoIp/README
  • lines changed 2, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hg/hgBlatTest/makefile
  • lines changed 3, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hg/hgMirror/hgMirror
  • lines changed 7, context: html, text, full: html, text
    5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 Tue Aug 21 00:01:25 2018 -0700
    changing cse subdomain to soe
• src/hg/hgTracks/interactTrack.c
  • lines changed 24, context: html, text, full: html, text
    d55f8036a2a03c72c31b2e70d6adb22d8d0301cb Thu Aug 9 15:52:05 2018 -0700
    Add setting to offset target endpoints from source endpoints. refs #21109
  • lines changed 4, context: html, text, full: html, text
    6e60e7d3ae54dab60eb8c7ad1af02441266729c3 Mon Aug 13 15:24:08 2018 -0700
    Expanding interactDirectional to allow source or target offset display. refs #21109
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    8fdcab346a8b88a6395eecbc5a4925c2572215e1 Mon Aug 13 16:35:29 2018 -0700
    Support for source or target end offsets. refs #21109
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    374405106b2e246ff47079103aee676e413b7534 Wed Aug 15 16:11:04 2018 -0700
    Adding 'foot' arg to click through, so interactions using same endpoint can be shown on details page. Still need to add code to make use of bigBed indexing. refs #21917
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    d6f591dd751bfa252163c710f614ddd2b4fb421b Sun Aug 26 20:03:45 2018 -0700
    Overlapping interactions. refs #21917
• src/hg/hgc/barChartClick.c
  • lines changed 6, context: html, text, full: html, text
    c3cba271647d7a8d2df940be434dc4f1970d2067 Fri Aug 24 17:40:09 2018 -0700
    fixing possible crash in hgc for bigBarChart, no redmine
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    2720d498ff1fcf6f91bfb68bed205788161baf99 Fri Aug 24 18:13:10 2018 -0700
    oops forgot to remove debugging printfs in the last commit
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    568ea79b380d977ebc8f3f35cb5cb20130c746c2 Fri Aug 24 18:46:16 2018 -0700
    fixing another barchart crash, when the size does not include the trailing newline, no redmine
• src/hg/hgc/interactClick.c
  • lines changed 65, context: html, text, full: html, text
    cc6dfb2327a38c758277142df7d35c03d92b0c0f Wed Aug 15 13:51:16 2018 -0700
    List multiple items on details page if they overlap. refs #21917
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    374405106b2e246ff47079103aee676e413b7534 Wed Aug 15 16:11:04 2018 -0700
    Adding 'foot' arg to click through, so interactions using same endpoint can be shown on details page. Still need to add code to make use of bigBed indexing. refs #21917
  • lines changed 1, context: html, text, full: html, text
    d6f591dd751bfa252163c710f614ddd2b4fb421b Sun Aug 26 20:03:45 2018 -0700
    Overlapping interactions. refs #21917
• src/hg/hgc/lowelab.c
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    305cf5b58959929ced4acf3293ebd035bb35ff43 Mon Aug 20 14:08:40 2018 -0700
    Cleanup requested by Lowe Lab.
• src/hg/hgs/hgs.c
  • lines changed 79, context: html, text, full: html, text
    3287b31723908959aff8fa82b5406e0e32a3e94f Wed Aug 22 16:57:04 2018 -0700
    New CGI for short linking to sessions, refs #8520
• src/hg/hgs/makefile
  • lines changed 18, context: html, text, full: html, text
    3287b31723908959aff8fa82b5406e0e32a3e94f Wed Aug 22 16:57:04 2018 -0700
    New CGI for short linking to sessions, refs #8520
• src/hg/htdocs/FAQ/FAQblat.html
  • lines changed 3, context: html, text, full: html, text
    b448752a3bc70215db04d531b0841b7a9c49a459 Wed Aug 22 16:06:39 2018 -0700
    fixing genome-source URLs to use gitlist syntax
• src/hg/htdocs/FAQ/FAQformat.html
  • lines changed 1, context: html, text, full: html, text
    b448752a3bc70215db04d531b0841b7a9c49a459 Wed Aug 22 16:06:39 2018 -0700
    fixing genome-source URLs to use gitlist syntax
• src/hg/htdocs/FAQ/FAQlicense.html
  • lines changed 1, context: html, text, full: html, text
    b448752a3bc70215db04d531b0841b7a9c49a459 Wed Aug 22 16:06:39 2018 -0700
    fixing genome-source URLs to use gitlist syntax
• src/hg/htdocs/admin/git.html
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• src/hg/htdocs/admin/jk-install.html
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    b448752a3bc70215db04d531b0841b7a9c49a459 Wed Aug 22 16:06:39 2018 -0700
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• src/hg/htdocs/goldenPath/gbdDescriptions.html
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    b448752a3bc70215db04d531b0841b7a9c49a459 Wed Aug 22 16:06:39 2018 -0700
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• src/hg/htdocs/goldenPath/gbdDescriptionsOld.html
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• src/hg/htdocs/goldenPath/help/bigBed.html
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    b448752a3bc70215db04d531b0841b7a9c49a459 Wed Aug 22 16:06:39 2018 -0700
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• src/hg/htdocs/goldenPath/help/cram.html
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• src/hg/htdocs/goldenPath/help/gbic.html
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• src/hg/htdocs/goldenPath/help/interact.html
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    62baed7ea5198ec98eabb2d5d08b161addc6a8ab Wed Aug 22 17:12:36 2018 -0700
    added field names to the example commented out
• src/hg/htdocs/goldenPath/help/mysql.html
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• src/hg/htdocs/style/floretStyle.css
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• src/hg/htdocs/style/jWest.css
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• src/hg/htdocs/training/index.html
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    1b1261fa2a82b85a769a22ac4fb050004e48f0ab Wed Aug 22 11:36:25 2018 -0700
    dropping completed ucDavis workshop
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    ab73aedaf9d64f049aba7352d7bdf6603ea5a746 Fri Aug 24 20:31:36 2018 -0700
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    c1b2ea9671d1c1b53e63577e981ba6b49b7e1ebf Fri Aug 24 20:40:07 2018 -0700
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• src/hg/inc/hvGfx.h
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    8fdcab346a8b88a6395eecbc5a4925c2572215e1 Mon Aug 13 16:35:29 2018 -0700
    Support for source or target end offsets. refs #21109
• src/hg/inc/interactUi.h
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    d55f8036a2a03c72c31b2e70d6adb22d8d0301cb Thu Aug 9 15:52:05 2018 -0700
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    56c68757f5020c6ef65c137a37e10ad8d3bcb399 Thu Aug 9 16:43:27 2018 -0700
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    6e60e7d3ae54dab60eb8c7ad1af02441266729c3 Mon Aug 13 15:24:08 2018 -0700
    Expanding interactDirectional to allow source or target offset display. refs #21109
• src/hg/js/test/README
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• src/hg/js/test/jsTestDriver.conf
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• src/hg/lib/interactUi.c
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    e689639ae47042fd32ee7aea977197970dbb9e2e Mon Aug 13 14:50:08 2018 -0700
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    6e60e7d3ae54dab60eb8c7ad1af02441266729c3 Mon Aug 13 15:24:08 2018 -0700
    Expanding interactDirectional to allow source or target offset display. refs #21109
• src/hg/makeDb/crisprTrack/crisprAddGenome.py
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• src/hg/makeDb/crisprTrack/lib/twobitreader/download.py
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• src/hg/makeDb/genbank/etc/euronode-copy
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• src/hg/makeDb/genbank/etc/euronode-dbload
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• src/hg/makeDb/genbank/makefile
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• src/hg/makeDb/genbank/tests/tools/optimizeTables
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• src/hg/makeDb/hgLoadWiggle/chkWiggleTable.sh
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• src/hg/makeDb/makeLoChain/makeLoChain-align.csh
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• src/hg/makeDb/trackDb/README
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• src/hg/makeDb/trackDb/checkMetaDb
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• src/hg/makeDb/trackDb/chimp/panTro6/trackDb.ra
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    dc38dad5d9bc22c5493ff0c43f9b7752a195652d Wed Aug 22 14:02:28 2018 -0700
    Removing chainLinearGap from the override since it is redundant. The value is the same as the default. refs #21929
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
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• src/hg/makeDb/trackDb/cv/beta/cv.ra
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• src/hg/makeDb/trackDb/cv/public/cv.ra
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• src/hg/makeDb/trackDb/ebola/eboVir3/cons160way.html
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• src/hg/makeDb/trackDb/human/hg19/gap.html
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    changed dashes to mdash. showing daniel trackDb
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
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• src/hg/makeDb/trackDb/human/hg38/altSequence.html
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• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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• src/hg/makeDb/trackDb/loadTracks
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• src/hg/makeDb/trackDb/makeMetaDb
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• src/hg/makeDb/trackDb/mouse/mm7/knownGene.html
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    Updating http to https for mm7, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/mm7/picTar.html
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• src/hg/makeDb/trackDb/template.html
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• src/hg/makeDb/trackDb/uniprot.html
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• src/hg/makeDb/trackDb/zebrafish/affyZonWildType.html
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• src/hg/makeDb/trackDb/zebrafish/danRer3/bacEndPairs.html
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• src/hg/makeDb/trackDb/zebrafish/danRer3/bacEndSingles.html
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• src/hg/makeDb/trackDb/zebrafish/danRer3/chainSelf.html
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• src/hg/makeDb/trackDb/zebrafish/danRer3/ctgPos2.html
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• src/hg/makeDb/trackDb/zebrafish/danRer3/gold.html
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• src/hg/makeDb/trackDb/zebrafish/danRer3/multiz5way.html
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• src/hg/makeDb/trackDb/zebrafish/danRer3/rhMap.html
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• src/hg/makefile
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    3287b31723908959aff8fa82b5406e0e32a3e94f Wed Aug 22 16:57:04 2018 -0700
    New CGI for short linking to sessions, refs #8520
• src/hg/near/hgNearTest/makefile
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• src/hg/phyloPng/makefile
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• src/hg/pyLib/hgLib.py
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• src/hg/txGraph/algorithms.txt
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• src/hg/utils/automation/doBlastzChainNet.pl
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• src/hg/utils/automation/doRecipBest.pl
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• src/hg/utils/automation/doSameSpeciesLiftOver.pl
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• src/hg/utils/automation/genbank/README.txt
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• src/hg/utils/automation/openStack/paraHubSetup.sh
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• src/hg/utils/genomeQuality/genomeQuality.pl
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• src/inc/bwgInternal.h
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    4a73fd653634412cc9ad0fc17aab320c3fb30be2 Fri Aug 24 17:42:31 2018 -0700
    making the wigToBigWig -clip option more tolerant to hg38 chroms with non-Hiram names, no redmine
• src/inc/common.mk
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    dfda270f3f49ac1f56528bdc6cb23f3fefa09ac9 Wed Aug 22 14:22:44 2018 -0700
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• src/lib/bwgCreate.c
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    4a73fd653634412cc9ad0fc17aab320c3fb30be2 Fri Aug 24 17:42:31 2018 -0700
    making the wigToBigWig -clip option more tolerant to hg38 chroms with non-Hiram names, no redmine
• src/lib/net.c
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    c0559c7337852834308620733c839b69d07549d3 Fri Aug 24 15:33:17 2018 -0700
    Fixes problem with byterange and double redirect in net.c for example hubs and tracks hosted on hgwdev.
• src/lib/tests/fetchUrlTest.c
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    ab14d76f5c397c8c0da0192592b8600640b2669e Fri Aug 24 16:07:27 2018 -0700
    minor improvement
• src/product/README.QuickStart
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• src/product/README.building.source
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• src/product/README.install
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• src/product/README.local.git.source
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• src/product/README.mysql.setup
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• src/product/README.requirements
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• src/product/ex.hg.conf
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• src/product/installer/README.md
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• src/product/installer/browserSetup.sh
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    b448752a3bc70215db04d531b0841b7a9c49a459 Wed Aug 22 16:06:39 2018 -0700
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• src/product/minimal.hg.conf
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• src/product/scripts/README
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• src/product/scripts/activeDbList.sh
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• src/product/scripts/browserEnvironment.txt
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• src/product/scripts/fetchHgCentral.sh
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• src/product/scripts/kentSrcUpdate.sh
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