All File Changes

v382_preview to v382_preview2 (2019-05-06 to 2019-05-13) v382

• confs/hgwdev.hg.conf
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    b0e3641e5d6074c8deb5c89ba0333de5847f9cda Sun May 12 01:11:46 2019 -0700
    Installing updated hg.conf files from UCSC servers
• src/hg/cirm/cdw/cdwGetFile/cdwGetFile.c
  • lines changed 21, context: html, text, full: html, text
    b9790c43b9e50be9b2b1d5f97ad760c5442ae8a9 Sun May 12 02:07:18 2019 -0700
    Adding 400, 401, 403, 404 http response errors. Helps browser and htmlCheck know that there is a problem.
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    33ff7f177b5641cd9aebb684a057a84b08920d8c Sun May 12 11:52:14 2019 -0700
    It makes sense to treat the missing accession id like a 404 for downloads via cdwGetFile
• src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c
  • lines changed 1, context: html, text, full: html, text
    cbf4c7b6c3904b38057e689cef37baedaa10a9f9 Sat May 11 21:49:56 2019 -0700
    swapping field order as requested. moving lab and data_set_id further down in the list.
• src/hg/cirm/cdw/lib/cdwNavBar.h
  • lines changed 1, context: html, text, full: html, text
    3e8d247277c158e7586cae231f349ec47f123cb7 Sat May 11 03:32:16 2019 -0700
    cdw cleanup unneeded li tag in menu. removed old comment.
• src/hg/cirm/cdw/lib/cdwPageFooter.h
  • lines changed 1, context: html, text, full: html, text
    1369d6a545c0e0380f964b2cc3be5cd0e6681a3a Sun May 12 02:37:23 2019 -0700
    fixing cdw footer for CESCG pdf link
• src/hg/hgBlat/hgBlat.c
  • lines changed 3, context: html, text, full: html, text
    a7862d4f9328120aafe39604f07aa39b293e76bd Thu May 9 15:29:17 2019 -0700
    Brian requested single paragraph
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 7, context: html, text, full: html, text
    ea98af2e746d154a9a3d493a5b2d9f5932b39d47 Sun May 5 15:23:59 2019 -0700
    Clean up UI for factorSource right labels, and make both selections default on (checking w/ JK). Enhancements for ENCODE TF Clusters track update. refs #21139
  • lines changed 2, context: html, text, full: html, text
    ca9faceb4bea8c732c739d9ae3499cb6e14014e1 Thu May 9 11:10:06 2019 -0700
    Limit top links for Downloads and Contacts to ENCODE production phase tracks (not required for ENCODE 3 tracks). refs #23243
  • lines changed 2, context: html, text, full: html, text
    ba72264e2cb13ed8ce40418bb42eafb2e88e7869 Sun May 12 21:26:43 2019 -0700
    Adding spectrum.js to hgTrackUi for color inputs, refs #18842
• src/hg/hgTracks/bedTrack.c
  • lines changed 5, context: html, text, full: html, text
    dff3f2a22bb375a6ec0eb38ab29b8bdc1e0de9d2 Thu May 9 11:47:45 2019 -0700
    fix filters on bigBeds with over 32 fields. Fix justification of dense left label on gdcCancer track
• src/hg/hgTracks/bigBedTrack.c
  • lines changed 1, context: html, text, full: html, text
    dff3f2a22bb375a6ec0eb38ab29b8bdc1e0de9d2 Thu May 9 11:47:45 2019 -0700
    fix filters on bigBeds with over 32 fields. Fix justification of dense left label on gdcCancer track
• src/hg/hgTracks/factorSource.c
  • lines changed 1, context: html, text, full: html, text
    ea98af2e746d154a9a3d493a5b2d9f5932b39d47 Sun May 5 15:23:59 2019 -0700
    Clean up UI for factorSource right labels, and make both selections default on (checking w/ JK). Enhancements for ENCODE TF Clusters track update. refs #21139
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    dd762ac172cffcdea562a5629554698bce13f2e2 Fri May 10 16:42:28 2019 -0700
    oops, hideKids was checking for a 0 instead of presence for composites
• src/hg/hgTracks/hgTracks.h
  • lines changed 3, context: html, text, full: html, text
    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
    Initial commit of Hi-C display support via .hic files, refs #18842
• src/hg/hgTracks/hicTrack.c
  • lines changed 513, context: html, text, full: html, text
    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
    Initial commit of Hi-C display support via .hic files, refs #18842
• src/hg/hgTracks/lolly.h
  • lines changed 1, context: html, text, full: html, text
    127b6b678948569c41e56db76db116e2a3836beb Wed May 8 14:14:39 2019 -0700
    Add a pack mode to bigLolly that shows the data as bigBed
  • lines changed 2, context: html, text, full: html, text
    dff3f2a22bb375a6ec0eb38ab29b8bdc1e0de9d2 Thu May 9 11:47:45 2019 -0700
    fix filters on bigBeds with over 32 fields. Fix justification of dense left label on gdcCancer track
• src/hg/hgTracks/lollyTrack.c
  • lines changed 31, context: html, text, full: html, text
    127b6b678948569c41e56db76db116e2a3836beb Wed May 8 14:14:39 2019 -0700
    Add a pack mode to bigLolly that shows the data as bigBed
  • lines changed 11, context: html, text, full: html, text
    dff3f2a22bb375a6ec0eb38ab29b8bdc1e0de9d2 Thu May 9 11:47:45 2019 -0700
    fix filters on bigBeds with over 32 fields. Fix justification of dense left label on gdcCancer track
• src/hg/hgTracks/makefile
  • lines changed 1, context: html, text, full: html, text
    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
    Initial commit of Hi-C display support via .hic files, refs #18842
• src/hg/hgTracks/simpleTracks.c
  • lines changed 4, context: html, text, full: html, text
    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
    Initial commit of Hi-C display support via .hic files, refs #18842
• src/hg/hgc/peakClusters.c
  • lines changed 26, context: html, text, full: html, text
    e25bb6ee49c45a024860feee889688230d50b413 Fri May 10 15:14:06 2019 -0700
    Add links pointing to ENCODE portal pages, to peak cluster details. Input from JK. refs #21139
• src/hg/htdocs/FAQ/FAQdownloads.html
  • lines changed 11, context: html, text, full: html, text
    6a211b4bfd69949866640e3c33054467c35b05cd Wed May 8 09:40:11 2019 -0700
    Adding another bigBedToBed example using the hgdownload-euro server, refs #20551
• src/hg/htdocs/FAQ/FAQlink.html
  • lines changed 152, context: html, text, full: html, text
    cd5a9cb6994919e931d32d43bed2ad149e87c62c Wed May 8 11:09:54 2019 -0700
    Adding more info and changes from Brian's proofread #23131
  • lines changed 2, context: html, text, full: html, text
    365b6551e0e3ef1c0eb4908eaf29a40427390d93 Wed May 8 12:58:58 2019 -0700
    Minor punctuation changes #21131
  • lines changed 12, context: html, text, full: html, text
    48767d83b6b5cbba8bfa1bfada682effec74f83f Wed May 8 14:35:15 2019 -0700
    Adding defintions for URL params #23131
  • lines changed 2, context: html, text, full: html, text
    41e95869bc578e5b7bb4b5e6a9a0db359209aea1 Wed May 8 15:07:02 2019 -0700
    Removing inconsistent periods #23131
• src/hg/htdocs/goldenPath/help/api.html
  • lines changed 12, context: html, text, full: html, text
    daab58830afaaff9af3cd658fc0c544b2f151e7f Tue May 7 10:55:03 2019 -0700
    update to api.genome.ucsc.edu reference refs #18869
  • lines changed 16, context: html, text, full: html, text
    4394637e2f1a5665405d2a70cde01e0c9bea18ca Tue May 7 13:05:22 2019 -0700
    eliminate underscores from Plants hub names refs #18869
• src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html
  • lines changed 19, context: html, text, full: html, text
    fb03279f1b82b728d35b24d8e2e3fe1757098da1 Thu May 9 15:35:25 2019 -0700
    Adding edits to various locations for CR, refs #23444
• src/hg/htdocs/goldenPath/help/mirrorManual.html
  • lines changed 30, context: html, text, full: html, text
    4c58a7409dd32d544c1045da57c47f6219ddef5f Wed May 8 09:15:26 2019 -0700
    Adding rsync examples to the mirrorManual.html page, refs #20551
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 3, context: html, text, full: html, text
    5962a82b2d286040a8f45857d983ac7496632d0c Thu May 9 11:42:23 2019 -0700
    Adding a note about types in hubs versus types in source.
• src/hg/htdocs/images/cellbrowser.png
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    3d9ee83a5687500fb54e6894b17e0331f413d1e1 Mon May 13 05:28:43 2019 -0700
    adding first version of single cell static page, refs #22679
• src/hg/htdocs/images/screenshot-tabMuris.png
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    3d9ee83a5687500fb54e6894b17e0331f413d1e1 Mon May 13 05:28:43 2019 -0700
    adding first version of single cell static page, refs #22679
• src/hg/htdocs/singlecell.html
  • lines changed 107, context: html, text, full: html, text
    3d9ee83a5687500fb54e6894b17e0331f413d1e1 Mon May 13 05:28:43 2019 -0700
    adding first version of single cell static page, refs #22679
• src/hg/htdocs/style/HGStyle.css
  • lines changed 3, context: html, text, full: html, text
    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
    Initial commit of Hi-C display support via .hic files, refs #18842
• src/hg/htdocs/training/index.html
  • lines changed 26, context: html, text, full: html, text
    c00a65d25b98e7fede58081479ed7323535da368 Mon May 6 14:45:34 2019 -0700
    dropping completed mexico workshop, moving amsterdam into near-future list with link, adding links to grand rapids and kansas city.
• src/hg/hubApi/apiUtils.c
  • lines changed 1, context: html, text, full: html, text
    0fa463010909722ad54a2a938e244b0bc9c94589 Tue May 7 13:32:50 2019 -0700
    provide error exit timing for apache error_log refs #18869
  • lines changed 32, context: html, text, full: html, text
    fd532108ac0d9e35b8fe6087e86e84a0e073eae3 Wed May 8 12:08:40 2019 -0700
    for list/ucscGenomes function only show active=1 genomes by default with hidden option showActive0=on to allow show of active=0 genomes refs #18869
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    5157fdf6389da69cc64f5c0f222f9f6bc8358fec Fri May 10 14:23:21 2019 -0700
    better to centralize listing of legal arguments in one location refs #23437 #18869
• src/hg/hubApi/dataApi.h
  • lines changed 2, context: html, text, full: html, text
    0fa463010909722ad54a2a938e244b0bc9c94589 Tue May 7 13:32:50 2019 -0700
    provide error exit timing for apache error_log refs #18869
  • lines changed 3, context: html, text, full: html, text
    fd532108ac0d9e35b8fe6087e86e84a0e073eae3 Wed May 8 12:08:40 2019 -0700
    for list/ucscGenomes function only show active=1 genomes by default with hidden option showActive0=on to allow show of active=0 genomes refs #18869
  • lines changed 1, context: html, text, full: html, text
    372b7cc0781a079e0b264e0b2b7758eb8712bff2 Thu May 9 10:48:15 2019 -0700
    Two is actually Too refs #18869
  • lines changed 9, context: html, text, full: html, text
    5157fdf6389da69cc64f5c0f222f9f6bc8358fec Fri May 10 14:23:21 2019 -0700
    better to centralize listing of legal arguments in one location refs #23437 #18869
• src/hg/hubApi/getData.c
  • lines changed 2, context: html, text, full: html, text
    5157fdf6389da69cc64f5c0f222f9f6bc8358fec Fri May 10 14:23:21 2019 -0700
    better to centralize listing of legal arguments in one location refs #23437 #18869
• src/hg/hubApi/hubApi.c
  • lines changed 2, context: html, text, full: html, text
    0fa463010909722ad54a2a938e244b0bc9c94589 Tue May 7 13:32:50 2019 -0700
    provide error exit timing for apache error_log refs #18869
  • lines changed 28, context: html, text, full: html, text
    fd532108ac0d9e35b8fe6087e86e84a0e073eae3 Wed May 8 12:08:40 2019 -0700
    for list/ucscGenomes function only show active=1 genomes by default with hidden option showActive0=on to allow show of active=0 genomes refs #18869
  • lines changed 1, context: html, text, full: html, text
    aa8973d200491bde968e21fcc8bb40cb0f6fd84e Thu May 9 11:04:20 2019 -0700
    need to sleep even in the case of hogExit refs #18869
• src/hg/hubApi/list.c
  • lines changed 5, context: html, text, full: html, text
    5157fdf6389da69cc64f5c0f222f9f6bc8358fec Fri May 10 14:23:21 2019 -0700
    better to centralize listing of legal arguments in one location refs #23437 #18869
• src/hg/hubApi/tests/expected/err01.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/err02.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/err03.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/err04.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/err07.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/err20.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/err26.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/err27.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/err28.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/err29.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/err32.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/err33.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/err34.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/err35.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/err36.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/getSeq01.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/list01.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/list02.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/list06.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/list07.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/list08.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/test11.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/test12.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/test13.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/wig10.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/wig11.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/wig12.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/wig22.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/wig23.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/expected/wig24.gz
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/hubApi/tests/makefile
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    7a9a2ada4fa7cc6697f8033e219ca1e2a5349316 Tue May 7 13:14:50 2019 -0700
    eliminate the underscores from the Plants hub refs #18869
• src/hg/inc/Cstraw.h
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    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
    Initial commit of Hi-C display support via .hic files, refs #18842
• src/hg/inc/chromAlias.h
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    14dbb674fd1cc2300b157847a50dae414aa44e40 Mon May 6 10:08:20 2019 -0700
    Moved chromAlias.h from hg/inc to hg/lib, apparently git missed the memo, no ticket
• src/hg/inc/hic.h
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    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
    Initial commit of Hi-C display support via .hic files, refs #18842
• src/hg/inc/hicUi.h
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    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
    Initial commit of Hi-C display support via .hic files, refs #18842
• src/hg/inc/hui.h
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    ca9faceb4bea8c732c739d9ae3499cb6e14014e1 Thu May 9 11:10:06 2019 -0700
    Limit top links for Downloads and Contacts to ENCODE production phase tracks (not required for ENCODE 3 tracks). refs #23243
• src/hg/inc/trackDb.h
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    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
    Initial commit of Hi-C display support via .hic files, refs #18842
• src/hg/js/hui.js
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    1eaedcf685289f4cddd2f7c1206e8fb2d90ce0bf Mon May 6 17:22:43 2019 -0700
    allow users to turn on or off advanced controls in filters
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    8ff3b1dca5e9e0bb4f8670f5bca2dd9c0e2a4527 Tue May 7 10:55:47 2019 -0700
    use the little blue arrow to hide/unhide the advanced filter controls
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    fe43cd3394528a515b867eb2e8f69d152bd4d178 Mon May 6 10:01:16 2019 -0700
    A few initial library additions for eventual Hi-C support, refs #18842
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    fe43cd3394528a515b867eb2e8f69d152bd4d178 Mon May 6 10:01:16 2019 -0700
    A few initial library additions for eventual Hi-C support, refs #18842
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    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
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    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
    Initial commit of Hi-C display support via .hic files, refs #18842
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    d1dafcb2502a7c2fd549c0bf978f15920a817a37 Mon May 6 15:22:05 2019 -0700
    Fix problem with +/- buttons at buttoms of big matrix. They were being created with non-unique ID. refs #20532
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    1eaedcf685289f4cddd2f7c1206e8fb2d90ce0bf Mon May 6 17:22:43 2019 -0700
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    8ff3b1dca5e9e0bb4f8670f5bca2dd9c0e2a4527 Tue May 7 10:55:47 2019 -0700
    use the little blue arrow to hide/unhide the advanced filter controls
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    ca9faceb4bea8c732c739d9ae3499cb6e14014e1 Thu May 9 11:10:06 2019 -0700
    Limit top links for Downloads and Contacts to ENCODE production phase tracks (not required for ENCODE 3 tracks). refs #23243
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    4b7932eab53f17d8beac9a0853286e5dfcdcc5a8 Thu May 9 17:44:54 2019 -0700
    Add override option to pennantIcon (needed for supertracks).
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    b49b64da2abd8202b9d2fd5243a777f3906de708 Fri May 10 13:11:16 2019 -0700
    Fix problem with +/- buttons controlling vertical colunmns in matrix. They were being created with non-unique ids. refs #23452
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    e2b2a906fdde9ae81b6d5e4ac3642d0a5c604005 Fri May 10 13:42:13 2019 -0700
    make Advanced filter think blue and underlined. Also, only appear if we're bigBed filtering
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    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
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    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
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    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
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    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
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    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
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    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
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    3e8d247277c158e7586cae231f349ec47f123cb7 Sat May 11 03:32:16 2019 -0700
    cdw cleanup unneeded li tag in menu. removed old comment.
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    127b6b678948569c41e56db76db116e2a3836beb Wed May 8 14:14:39 2019 -0700
    Add a pack mode to bigLolly that shows the data as bigBed
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    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
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    8f1411e5356e0a7adaa7da6e7e8035ec6347b6d3 Tue May 7 11:27:49 2019 -0700
    avoid needless leading underscores _ in hub naming schemes refs #18869
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    aba55984f35dacd02061eafb2ca9a9784efb8bae Thu May 9 16:31:31 2019 -0700
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    50c0049649c7268bd12ab0689cda7f8261b46a63 Mon May 6 16:11:42 2019 -0700
    DGV Gold track mostly ready for QA, refs #23371
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    8f259b05deaa29bdf499d66258135465505a0725 Tue May 7 13:51:27 2019 -0700
    Update dgv gold bigBed with search index, refs #23371
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    aba55984f35dacd02061eafb2ca9a9784efb8bae Thu May 9 16:31:31 2019 -0700
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    aba55984f35dacd02061eafb2ca9a9784efb8bae Thu May 9 16:31:31 2019 -0700
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    aba55984f35dacd02061eafb2ca9a9784efb8bae Thu May 9 16:31:31 2019 -0700
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    aba55984f35dacd02061eafb2ca9a9784efb8bae Thu May 9 16:31:31 2019 -0700
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    5ab918a1f0f82450a20ecfa649679ad6e049a0e3 Thu May 9 17:49:09 2019 -0700
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    50c0049649c7268bd12ab0689cda7f8261b46a63 Mon May 6 16:11:42 2019 -0700
    DGV Gold track mostly ready for QA, refs #23371
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    839eb00f05b954a1d26a7e8f327bf3da04820c83 Tue May 7 13:48:27 2019 -0700
    Adding name search for dgv gold track, refs #23371
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgTfbsUniform.ra
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    5ab918a1f0f82450a20ecfa649679ad6e049a0e3 Thu May 9 17:49:09 2019 -0700
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    5ab918a1f0f82450a20ecfa649679ad6e049a0e3 Thu May 9 17:49:09 2019 -0700
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    5ab918a1f0f82450a20ecfa649679ad6e049a0e3 Thu May 9 17:49:09 2019 -0700
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    aba55984f35dacd02061eafb2ca9a9784efb8bae Thu May 9 16:31:31 2019 -0700
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    5ab918a1f0f82450a20ecfa649679ad6e049a0e3 Thu May 9 17:49:09 2019 -0700
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    5ab918a1f0f82450a20ecfa649679ad6e049a0e3 Thu May 9 17:49:09 2019 -0700
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    aba55984f35dacd02061eafb2ca9a9784efb8bae Thu May 9 16:31:31 2019 -0700
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    5ab918a1f0f82450a20ecfa649679ad6e049a0e3 Thu May 9 17:49:09 2019 -0700
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    5ab918a1f0f82450a20ecfa649679ad6e049a0e3 Thu May 9 17:49:09 2019 -0700
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    5ab918a1f0f82450a20ecfa649679ad6e049a0e3 Thu May 9 17:49:09 2019 -0700
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    aba55984f35dacd02061eafb2ca9a9784efb8bae Thu May 9 16:31:31 2019 -0700
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    5ab918a1f0f82450a20ecfa649679ad6e049a0e3 Thu May 9 17:49:09 2019 -0700
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    1884acf1713a23e0bf0f6f546dbf9d592c07076e Sun May 12 22:11:46 2019 -0700
    Add setting for links on factorSource cluster details. refs #21139
• src/hg/makeDb/trackDb/human/hg38/gdcCancer.html
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    5dbc8e37d37d41e8da0b5a95325721df57210e75 Tue May 7 05:50:14 2019 -0700
    adding to docs page for gdcCancer track, refs #22742
• src/hg/makeDb/trackDb/human/hg38/gdcCancer.ra
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    63b69455ae7d589506d1de7d49c8442fde701994 Mon May 6 13:11:05 2019 -0700
    put filters at top level in GDC Cancer track
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    30e057e128c94224ba3c67e0e4866e412b6d094b Wed May 8 14:18:49 2019 -0700
    some tweaks to gdcCancer track
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    dff3f2a22bb375a6ec0eb38ab29b8bdc1e0de9d2 Thu May 9 11:47:45 2019 -0700
    fix filters on bigBeds with over 32 fields. Fix justification of dense left label on gdcCancer track
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    aba55984f35dacd02061eafb2ca9a9784efb8bae Thu May 9 16:31:31 2019 -0700
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    5ab918a1f0f82450a20ecfa649679ad6e049a0e3 Thu May 9 17:49:09 2019 -0700
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    297b95b8bf487c1c97378bb5d5114686eda02c1b Thu May 9 17:56:14 2019 -0700
    Tweak icon message.
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    5ab918a1f0f82450a20ecfa649679ad6e049a0e3 Thu May 9 17:49:09 2019 -0700
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• src/hg/makeDb/trackDb/mouse/mm10/defaultPriority.ra
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    c49064c3c614cd14d60ddde792647e38bb8329c5 Mon May 6 15:29:02 2019 -0700
    Changing visibilities on mm10 default tracks #23434
• src/hg/makeDb/trackDb/mouse/mm10/mm10Patch4.ra
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    c49064c3c614cd14d60ddde792647e38bb8329c5 Mon May 6 15:29:02 2019 -0700
    Changing visibilities on mm10 default tracks #23434
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    ee4676400f2aaa04f379194804cf54c59b51f593 Mon May 13 05:42:38 2019 -0700
    fixing up tab muris docs page, refs #21811
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    c49064c3c614cd14d60ddde792647e38bb8329c5 Mon May 6 15:29:02 2019 -0700
    Changing visibilities on mm10 default tracks #23434
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    c49064c3c614cd14d60ddde792647e38bb8329c5 Mon May 6 15:29:02 2019 -0700
    Changing visibilities on mm10 default tracks #23434
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    c49064c3c614cd14d60ddde792647e38bb8329c5 Mon May 6 15:29:02 2019 -0700
    Changing visibilities on mm10 default tracks #23434
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    50c0049649c7268bd12ab0689cda7f8261b46a63 Mon May 6 16:11:42 2019 -0700
    DGV Gold track mostly ready for QA, refs #23371
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    1884acf1713a23e0bf0f6f546dbf9d592c07076e Sun May 12 22:11:46 2019 -0700
    Add setting for links on factorSource cluster details. refs #21139
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    f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700
    Initial commit of Hi-C display support via .hic files, refs #18842
• src/hg/utils/automation/translateDgvGold.py
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    59ed2ee65401685e0a3f7c9e4277bdc1e6bde82e Mon May 6 10:35:21 2019 -0700
    Small script for translating dgv gff to bed12, refs #23371
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    50c0049649c7268bd12ab0689cda7f8261b46a63 Mon May 6 16:11:42 2019 -0700
    DGV Gold track mostly ready for QA, refs #23371
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    0415303224a924bb582bcd55dde59542909e0f6f Thu May 9 10:06:28 2019 -0700
    Fixup translateDgvGold script to add a space after each comma for better hgc text wrapping ,refs #23371
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    fe43cd3394528a515b867eb2e8f69d152bd4d178 Mon May 6 10:01:16 2019 -0700
    A few initial library additions for eventual Hi-C support, refs #18842
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    fe43cd3394528a515b867eb2e8f69d152bd4d178 Mon May 6 10:01:16 2019 -0700
    A few initial library additions for eventual Hi-C support, refs #18842
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    fe43cd3394528a515b867eb2e8f69d152bd4d178 Mon May 6 10:01:16 2019 -0700
    A few initial library additions for eventual Hi-C support, refs #18842
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    f1a4a262044ed35475efe87e454788e49f567534 Thu May 9 16:23:43 2019 -0700
    fixing out of memory problems on htmlCheck
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    fe43cd3394528a515b867eb2e8f69d152bd4d178 Mon May 6 10:01:16 2019 -0700
    A few initial library additions for eventual Hi-C support, refs #18842
• src/lib/udc.c
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    ddb71276f45d5967f0d2249478ef1a4ffe854163 Fri May 10 17:04:45 2019 -0700
    Fixing overflow bug with udcFileSize, no ticket
• src/lib/windowsToAscii.c
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    7c54162cec5c2a0540abe920b10fef44c10f9e4b Tue May 7 15:58:53 2019 -0700
    remove spurious slash at end of iconv call #23423
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    f1a4a262044ed35475efe87e454788e49f567534 Thu May 9 16:23:43 2019 -0700
    fixing out of memory problems on htmlCheck
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