File Changes for hiram

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v389_preview2 to v389_base (2019-10-07 to 2019-10-14) v389

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src/hg/hgSession/hgSession.c
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  4a5ae434b97f4539c685b10c92813077361ea3f7 Mon Oct 14 10:15:46 2019 -0700
  database variable should be global no redmine
src/hg/hubApi/apiUtils.c
- lines changed 4, context: html, text, full: html, text
  8548a5903f6181e2912ce0e584a0f56240de1858 Thu Oct 10 10:58:23 2019 -0700
  extend supported types for schema display to bigBarChart bigInteract and bigLolly and correct indicate not supported VCF types refs #23589
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  20d72f662e55fd7c611413dbb471a3a2714b9684 Thu Oct 10 14:09:53 2019 -0700
  newly supported type wigMaf refs #23589
src/hg/hubApi/dataApi.h
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  20d72f662e55fd7c611413dbb471a3a2714b9684 Thu Oct 10 14:09:53 2019 -0700
  newly supported type wigMaf refs #23589
src/hg/hubApi/getData.c
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  20d72f662e55fd7c611413dbb471a3a2714b9684 Thu Oct 10 14:09:53 2019 -0700
  newly supported type wigMaf refs #23589
src/hg/hubApi/hubApi.c
- lines changed 2, context: html, text, full: html, text
  20d72f662e55fd7c611413dbb471a3a2714b9684 Thu Oct 10 14:09:53 2019 -0700
  newly supported type wigMaf refs #23589
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  3b8b0dfa4a74833c50166b85257ebaf1affe5a06 Thu Oct 10 16:35:41 2019 -0700
  adding bigLolly type support
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  748c56e2d262310331911bee681b3608d7879051 Fri Oct 11 14:07:48 2019 -0700
  adding track types bigBarChart bigInteract clonePos refs #23589
src/hg/hubApi/list.c
- lines changed 25, context: html, text, full: html, text
  8548a5903f6181e2912ce0e584a0f56240de1858 Thu Oct 10 10:58:23 2019 -0700
  extend supported types for schema display to bigBarChart bigInteract and bigLolly and correct indicate not supported VCF types refs #23589
src/hg/hubApi/tests/expected/list03.gz
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  5c53dedf24121412e28b539cdfba8f2891d60bee Thu Oct 10 11:31:59 2019 -0700
  up to date track list for ce11 refs #23589
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  7fea9ff255a6436de9e6095d69553d8b5bb75778 Thu Oct 10 12:58:47 2019 -0700
  only compare track name listings on the /list/tracks function to avoid the confusion of changing genbank tables messing up the comparison refs #23589
src/hg/hubApi/tests/expected/list09.gz
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  5c53dedf24121412e28b539cdfba8f2891d60bee Thu Oct 10 11:31:59 2019 -0700
  up to date track list for ce11 refs #23589
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  7fea9ff255a6436de9e6095d69553d8b5bb75778 Thu Oct 10 12:58:47 2019 -0700
  only compare track name listings on the /list/tracks function to avoid the confusion of changing genbank tables messing up the comparison refs #23589
src/hg/hubApi/tests/expected/list18.gz
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  25149d3a1dafdf85838536e178b5e66515f8736b Thu Oct 10 14:08:11 2019 -0700
  testing newly supported type wigMaf refs #23589
src/hg/hubApi/tests/expected/notSup04.gz
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  e017e5e9d410b7f882fa5d9f343d7735b438a476 Fri Oct 11 15:27:26 2019 -0700
  remove obsolete test results refs #23589
src/hg/hubApi/tests/expected/notSup05.gz
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  e017e5e9d410b7f882fa5d9f343d7735b438a476 Fri Oct 11 15:27:26 2019 -0700
  remove obsolete test results refs #23589
src/hg/hubApi/tests/expected/notSup06.gz
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  e017e5e9d410b7f882fa5d9f343d7735b438a476 Fri Oct 11 15:27:26 2019 -0700
  remove obsolete test results refs #23589
src/hg/hubApi/tests/expected/schema08.gz
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  25149d3a1dafdf85838536e178b5e66515f8736b Thu Oct 10 14:08:11 2019 -0700
  testing newly supported type wigMaf refs #23589
src/hg/hubApi/tests/expected/schema09.gz
- lines changed 0, context: html, text, full: html, text
  3b8b0dfa4a74833c50166b85257ebaf1affe5a06 Thu Oct 10 16:35:41 2019 -0700
  adding bigLolly type support
src/hg/hubApi/tests/expected/schema10.gz
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  748c56e2d262310331911bee681b3608d7879051 Fri Oct 11 14:07:48 2019 -0700
  adding track types bigBarChart bigInteract clonePos refs #23589
src/hg/hubApi/tests/expected/schema11.gz
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  748c56e2d262310331911bee681b3608d7879051 Fri Oct 11 14:07:48 2019 -0700
  adding track types bigBarChart bigInteract clonePos refs #23589
src/hg/hubApi/tests/expected/schema12.gz
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  748c56e2d262310331911bee681b3608d7879051 Fri Oct 11 14:07:48 2019 -0700
  adding track types bigBarChart bigInteract clonePos refs #23589
src/hg/hubApi/tests/expected/test26.gz
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  5c53dedf24121412e28b539cdfba8f2891d60bee Thu Oct 10 11:31:59 2019 -0700
  up to date track list for ce11 refs #23589
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  9ef5f7a93d3b60eeb501170a76be3e5b019bf6ae Thu Oct 10 12:51:22 2019 -0700
  eliminate dependency on genbank changing track to test genePred refs #23589
src/hg/hubApi/tests/expected/test42.gz
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  25149d3a1dafdf85838536e178b5e66515f8736b Thu Oct 10 14:08:11 2019 -0700
  testing newly supported type wigMaf refs #23589
src/hg/hubApi/tests/expected/test43.gz
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  25149d3a1dafdf85838536e178b5e66515f8736b Thu Oct 10 14:08:11 2019 -0700
  testing newly supported type wigMaf refs #23589
src/hg/hubApi/tests/expected/test44.gz
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  25149d3a1dafdf85838536e178b5e66515f8736b Thu Oct 10 14:08:11 2019 -0700
  testing newly supported type wigMaf refs #23589
src/hg/hubApi/tests/expected/test45.gz
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  3b8b0dfa4a74833c50166b85257ebaf1affe5a06 Thu Oct 10 16:35:41 2019 -0700
  adding bigLolly type support
src/hg/hubApi/tests/expected/test46.gz
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  3b8b0dfa4a74833c50166b85257ebaf1affe5a06 Thu Oct 10 16:35:41 2019 -0700
  adding bigLolly type support
src/hg/hubApi/tests/expected/test47.gz
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  3b8b0dfa4a74833c50166b85257ebaf1affe5a06 Thu Oct 10 16:35:41 2019 -0700
  adding bigLolly type support
src/hg/hubApi/tests/expected/test48.gz
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  748c56e2d262310331911bee681b3608d7879051 Fri Oct 11 14:07:48 2019 -0700
  adding track types bigBarChart bigInteract clonePos refs #23589
src/hg/hubApi/tests/expected/test49.gz
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  748c56e2d262310331911bee681b3608d7879051 Fri Oct 11 14:07:48 2019 -0700
  adding track types bigBarChart bigInteract clonePos refs #23589
src/hg/hubApi/tests/expected/test50.gz
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  748c56e2d262310331911bee681b3608d7879051 Fri Oct 11 14:07:48 2019 -0700
  adding track types bigBarChart bigInteract clonePos refs #23589
src/hg/hubApi/tests/expected/test51.gz
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  748c56e2d262310331911bee681b3608d7879051 Fri Oct 11 14:07:48 2019 -0700
  adding track types bigBarChart bigInteract clonePos refs #23589
src/hg/hubApi/tests/expected/test52.gz
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  748c56e2d262310331911bee681b3608d7879051 Fri Oct 11 14:07:48 2019 -0700
  adding track types bigBarChart bigInteract clonePos refs #23589
src/hg/hubApi/tests/expected/test53.gz
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  748c56e2d262310331911bee681b3608d7879051 Fri Oct 11 14:07:48 2019 -0700
  adding track types bigBarChart bigInteract clonePos refs #23589
src/hg/hubApi/tests/expected/test54.gz
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  748c56e2d262310331911bee681b3608d7879051 Fri Oct 11 14:07:48 2019 -0700
  adding track types bigBarChart bigInteract clonePos refs #23589
src/hg/hubApi/tests/expected/test55.gz
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  748c56e2d262310331911bee681b3608d7879051 Fri Oct 11 14:07:48 2019 -0700
  adding track types bigBarChart bigInteract clonePos refs #23589
src/hg/hubApi/tests/expected/test56.gz
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  748c56e2d262310331911bee681b3608d7879051 Fri Oct 11 14:07:48 2019 -0700
  adding track types bigBarChart bigInteract clonePos refs #23589
src/hg/hubApi/tests/makefile
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  9c835eff071e0d0439042a30012634119712bc27 Thu Oct 10 11:34:10 2019 -0700
  updated error testing refs #23589
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  9ef5f7a93d3b60eeb501170a76be3e5b019bf6ae Thu Oct 10 12:51:22 2019 -0700
  eliminate dependency on genbank changing track to test genePred refs #23589
- lines changed 8, context: html, text, full: html, text
  7fea9ff255a6436de9e6095d69553d8b5bb75778 Thu Oct 10 12:58:47 2019 -0700
  only compare track name listings on the /list/tracks function to avoid the confusion of changing genbank tables messing up the comparison refs #23589
- lines changed 36, context: html, text, full: html, text
  25149d3a1dafdf85838536e178b5e66515f8736b Thu Oct 10 14:08:11 2019 -0700
  testing newly supported type wigMaf refs #23589
- lines changed 26, context: html, text, full: html, text
  3b8b0dfa4a74833c50166b85257ebaf1affe5a06 Thu Oct 10 16:35:41 2019 -0700
  adding bigLolly type support
- lines changed 75, context: html, text, full: html, text
  748c56e2d262310331911bee681b3608d7879051 Fri Oct 11 14:07:48 2019 -0700
  adding track types bigBarChart bigInteract clonePos refs #23589
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  360e462570bd06a078eaea70efdc84d5498db76a Fri Oct 11 15:24:42 2019 -0700
  eliminate tests for not supported as they are now supported refs #23589
src/hg/makeDb/doc/mm10.txt
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  c528cca108442ed73954b1ab87e64088c7c7c7d1 Mon Oct 7 14:23:18 2019 -0700
  lastz chainNet mm10 to regenRn1 rat refs #21579
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  2a038de3ff8f6ef5242536a5f5e94fcc0c65f652 Tue Oct 8 15:56:13 2019 -0700
  running up crisprAll track for mm10 no redmine
src/hg/makeDb/doc/papAnu4/initialBuild.txt
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  21448602a1ff6c887e857f85ba4ee23da3c9ebb9 Tue Oct 8 15:03:39 2019 -0700
  catch up with a missing download file papAnu4.mm10.rbest.axt.gz no redmine
src/hg/makeDb/doc/platinum/README.txt
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  dbdb3f0d042dfc47b1214c2212c8f32297125b5e Wed Oct 9 10:30:39 2019 -0700
  add construction information refs #21784
src/hg/makeDb/doc/platinum/accAsmId.list
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  10a6e5cd8350a3409c7a053ac6f78be70f459c2c Mon Oct 7 14:20:32 2019 -0700
  files to build the platinum genomes assembly hub refs #21784
src/hg/makeDb/doc/platinum/commonNameOrder.list
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  10a6e5cd8350a3409c7a053ac6f78be70f459c2c Mon Oct 7 14:20:32 2019 -0700
  files to build the platinum genomes assembly hub refs #21784
src/hg/makeDb/doc/platinum/commonNames.txt
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  10a6e5cd8350a3409c7a053ac6f78be70f459c2c Mon Oct 7 14:20:32 2019 -0700
  files to build the platinum genomes assembly hub refs #21784
src/hg/makeDb/doc/platinum/ethnicGroup.txt
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  10a6e5cd8350a3409c7a053ac6f78be70f459c2c Mon Oct 7 14:20:32 2019 -0700
  files to build the platinum genomes assembly hub refs #21784
src/hg/makeDb/doc/platinum/family.txt
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  10a6e5cd8350a3409c7a053ac6f78be70f459c2c Mon Oct 7 14:20:32 2019 -0700
  files to build the platinum genomes assembly hub refs #21784
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  558e29b1ae8bb00df3d6d6ee5c7842da76137e6a Tue Oct 8 10:03:18 2019 -0700
  eliminate MS-DOS CRLF line terminator refs #21784
src/hg/makeDb/doc/platinum/human.list
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  10a6e5cd8350a3409c7a053ac6f78be70f459c2c Mon Oct 7 14:20:32 2019 -0700
  files to build the platinum genomes assembly hub refs #21784
src/hg/makeDb/doc/platinum/isolate.txt
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  10a6e5cd8350a3409c7a053ac6f78be70f459c2c Mon Oct 7 14:20:32 2019 -0700
  files to build the platinum genomes assembly hub refs #21784
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  558e29b1ae8bb00df3d6d6ee5c7842da76137e6a Tue Oct 8 10:03:18 2019 -0700
  eliminate MS-DOS CRLF line terminator refs #21784
src/hg/makeDb/doc/platinum/makefile
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  10a6e5cd8350a3409c7a053ac6f78be70f459c2c Mon Oct 7 14:20:32 2019 -0700
  files to build the platinum genomes assembly hub refs #21784
src/hg/makeDb/doc/platinum/mkAsmStats.pl
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  10a6e5cd8350a3409c7a053ac6f78be70f459c2c Mon Oct 7 14:20:32 2019 -0700
  files to build the platinum genomes assembly hub refs #21784
src/hg/makeDb/doc/platinum/mkGenomes.pl
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  10a6e5cd8350a3409c7a053ac6f78be70f459c2c Mon Oct 7 14:20:32 2019 -0700
  files to build the platinum genomes assembly hub refs #21784
src/hg/makeDb/doc/platinum/mkHubIndex.pl
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  10a6e5cd8350a3409c7a053ac6f78be70f459c2c Mon Oct 7 14:20:32 2019 -0700
  files to build the platinum genomes assembly hub refs #21784
src/hg/makeDb/doc/platinum/mkSymLinks.sh
- lines changed 52, context: html, text, full: html, text
  10a6e5cd8350a3409c7a053ac6f78be70f459c2c Mon Oct 7 14:20:32 2019 -0700
  files to build the platinum genomes assembly hub refs #21784
src/hg/makeDb/doc/platinum/perlPara.pl
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  10a6e5cd8350a3409c7a053ac6f78be70f459c2c Mon Oct 7 14:20:32 2019 -0700
  files to build the platinum genomes assembly hub refs #21784
src/hg/makeDb/doc/platinum/redmine21784.fileList.txt
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  f330b19605ffb54cc3e13d2b9cdb23bece18a0c1 Mon Oct 7 14:26:25 2019 -0700
  list of files to push to hgdownload for release refs #21784
src/hg/makeDb/doc/platinum/runOne.sh
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  dbdb3f0d042dfc47b1214c2212c8f32297125b5e Wed Oct 9 10:30:39 2019 -0700
  add construction information refs #21784
src/hg/makeDb/trackDb/human/hg19/platinumGenomes.html
- lines changed 36, context: html, text, full: html, text
  9c4990e7206622fb42ed0de975bb2dd4b6d9d4f1 Mon Oct 7 15:34:00 2019 -0700
  adding VCF files from the platinum genome project refs #21784
src/hg/makeDb/trackDb/human/hg19/platinumGenomes.ra
- lines changed 51, context: html, text, full: html, text
  9c4990e7206622fb42ed0de975bb2dd4b6d9d4f1 Mon Oct 7 15:34:00 2019 -0700
  adding VCF files from the platinum genome project refs #21784
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  8d536c01c2c1830957ab16863aaedbf45ecd5c75 Mon Oct 7 15:43:04 2019 -0700
  adding platinum VCF file tracks to hg38 and hg19 refs #21784
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  a33c17e011949877036dce77048b220274dc1feb Mon Oct 7 15:47:58 2019 -0700
  correct symlinks refs #21784
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  a8e19c9657462c53e955bb58de7ef4093fda6d9c Wed Oct 9 11:43:23 2019 -0700
  adding data access section and correct reference refs #21784
src/hg/makeDb/trackDb/human/hg19/trackDb.ra
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  b4b4ba0dd0c19a9b0dc20cb1562b20de9ba3cd2f Mon Oct 7 16:57:42 2019 -0700
  adding platinumGenomes refs #21784
src/hg/makeDb/trackDb/human/hg38/platinumGenomes.html
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  8d536c01c2c1830957ab16863aaedbf45ecd5c75 Mon Oct 7 15:43:04 2019 -0700
  adding platinum VCF file tracks to hg38 and hg19 refs #21784
src/hg/makeDb/trackDb/human/hg38/platinumGenomes.ra
- lines changed 51, context: html, text, full: html, text
  8d536c01c2c1830957ab16863aaedbf45ecd5c75 Mon Oct 7 15:43:04 2019 -0700
  adding platinum VCF file tracks to hg38 and hg19 refs #21784
- lines changed 6, context: html, text, full: html, text
  a33c17e011949877036dce77048b220274dc1feb Mon Oct 7 15:47:58 2019 -0700
  correct symlinks refs #21784
- lines changed 1, context: html, text, full: html, text
  a8e19c9657462c53e955bb58de7ef4093fda6d9c Wed Oct 9 11:43:23 2019 -0700
  adding data access section and correct reference refs #21784
src/hg/makeDb/trackDb/human/hg38/trackDb.ra
- lines changed 1, context: html, text, full: html, text
  8d536c01c2c1830957ab16863aaedbf45ecd5c75 Mon Oct 7 15:43:04 2019 -0700
  adding platinum VCF file tracks to hg38 and hg19 refs #21784
- lines changed 1, context: html, text, full: html, text
  9db135f92c1f1ca5445f23101f7617f655827fe7 Wed Oct 9 10:24:45 2019 -0700
  adding platinum VCF tracks refs #21784
src/hg/makeDb/trackDb/human/platinumGenomes.html
- lines changed 57, context: html, text, full: html, text
  a8e19c9657462c53e955bb58de7ef4093fda6d9c Wed Oct 9 11:43:23 2019 -0700
  adding data access section and correct reference refs #21784

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