All File Changes

v390_preview2 to v390_base (2019-10-28 to 2019-11-04) v390

• src/browserbox/root/updateBrowser.sh
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    9a50cad7d19278c83614c84cd16f59c4750556a8 Tue Oct 29 11:12:28 2019 -0700
    Adding knownAttrs to the list of default hg38 tables on gbib, refs #24398
• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 51, context: html, text, full: html, text
    a48e4a31e870414b9ed4a9731bf4ca694e6ff008 Wed Oct 30 11:36:15 2019 -0700
    Fixes to hub searching after code review: Angie noticed that links were broken due to a bug, but it turns out they were broken in a much bigger way as subtrack search hits were not linking out to the right parent tracks. This has been fixed by adding a new column to the hubSearchText table to encode the parent type of the parent tracks (comp, super, etc), and then building the links the correct way, refs #24338
  • lines changed 1, context: html, text, full: html, text
    dd18234755c357c71093aff59a8ec8185e0851be Wed Oct 30 11:53:12 2019 -0700
    Closing a div that I forgot to close so the footer gets out of the table of public hubs, found by Dan
• src/hg/hgTracks/bigBedTrack.c
  • lines changed 16, context: html, text, full: html, text
    0f31a575a4aab5a27760676b40c71592217a61c8 Sun Nov 3 14:11:10 2019 -0800
    if people ask for filters on fields that don't exist, special case a few field names that exist at standard locations
• src/hg/hgc/bigDbSnpClick.c
  • lines changed 4, context: html, text, full: html, text
    acca3deffc05c4d8d11590a1cf3d893763254712 Thu Oct 31 13:43:05 2019 -0700
    dbSnp153: Adding new ucscNotes suggested by Ana Benet: clinvar{Benign,Conflicting,Pathogenic}, rareAll, rareSome. refs #23283
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 34, context: html, text, full: html, text
    2693ceee58c1848dbe7f051f5107a6e60406dc62 Thu Oct 31 16:04:27 2019 -0700
    Updating release docs for ENCODE 3 Reg. supertrack, refs #23880
  • lines changed 15, context: html, text, full: html, text
    a802e81d2d9370c88efa7153e9f3f4d5bec52e28 Thu Oct 31 16:32:54 2019 -0700
    Announcing the LRG update for hg19 and hg38, refs #24285
  • lines changed 47, context: html, text, full: html, text
    e336d663540641bf7e423e9398035a4a612b144f Thu Oct 31 16:43:13 2019 -0700
    Fixing a merge conflict. Commenting out Connor's announcement until tomorrow. Announcing the LRG update for hg19 and hg38, refs #24285
• src/hg/htdocs/images/enR.png
  • lines changed 0, context: html, text, full: html, text
    af4fdd3e7067f11fbd2d28a340dd0eacf43ab087 Thu Oct 31 13:52:44 2019 -0700
    Adding image for ENCODE 3 Reg. supertrack release, refs #23880
• src/hg/htdocs/images/kate2003.jpg
  • lines changed 0, context: html, text, full: html, text
    a821dea8712a10da60c4b3ab569ff1eab8a55377 Fri Nov 1 16:20:43 2019 -0700
    Adding a photo of Kate from 2003, refs #20314
• src/hg/htdocs/indexNews.html
  • lines changed 11, context: html, text, full: html, text
    2693ceee58c1848dbe7f051f5107a6e60406dc62 Thu Oct 31 16:04:27 2019 -0700
    Updating release docs for ENCODE 3 Reg. supertrack, refs #23880
  • lines changed 6, context: html, text, full: html, text
    a802e81d2d9370c88efa7153e9f3f4d5bec52e28 Thu Oct 31 16:32:54 2019 -0700
    Announcing the LRG update for hg19 and hg38, refs #24285
  • lines changed 15, context: html, text, full: html, text
    e336d663540641bf7e423e9398035a4a612b144f Thu Oct 31 16:43:13 2019 -0700
    Fixing a merge conflict. Commenting out Connor's announcement until tomorrow. Announcing the LRG update for hg19 and hg38, refs #24285
• src/hg/htdocs/license/gbLicense2019.pdf
  • lines changed 0, context: html, text, full: html, text
    8260118e0741f40c0e2993b9835fa18fc299048a Thu Oct 31 16:07:36 2019 -0700
    Updating license, refs #24326
• src/hg/htdocs/license/index.html
  • lines changed 1, context: html, text, full: html, text
    8260118e0741f40c0e2993b9835fa18fc299048a Thu Oct 31 16:07:36 2019 -0700
    Updating license, refs #24326
• src/hg/htdocs/style/HGStyle.css
  • lines changed 1, context: html, text, full: html, text
    ab8c75c06bffbecea6bda11535beaad614bcd494 Mon Oct 28 14:09:51 2019 -0700
    table.subtracks needs white-space:nowrap, but its normal table descendants do not; set back to normal. refs #23283 note-72
• src/hg/htdocs/training/index.html
  • lines changed 2, context: html, text, full: html, text
    5acad9e94a3bcc9a0e60e936b66e8a3b02f494e7 Mon Oct 28 16:47:35 2019 -0700
    correcting date and adding better link for UNC workshop
• src/hg/inc/bigDbSnp.h
  • lines changed 5, context: html, text, full: html, text
    acca3deffc05c4d8d11590a1cf3d893763254712 Thu Oct 31 13:43:05 2019 -0700
    dbSnp153: Adding new ucscNotes suggested by Ana Benet: clinvar{Benign,Conflicting,Pathogenic}, rareAll, rareSome. refs #23283
• src/hg/inc/hubSearchText.h
  • lines changed 3, context: html, text, full: html, text
    a48e4a31e870414b9ed4a9731bf4ca694e6ff008 Wed Oct 30 11:36:15 2019 -0700
    Fixes to hub searching after code review: Angie noticed that links were broken due to a bug, but it turns out they were broken in a much bigger way as subtrack search hits were not linking out to the right parent tracks. This has been fixed by adding a new column to the hubSearchText table to encode the parent type of the parent tracks (comp, super, etc), and then building the links the correct way, refs #24338
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    591e3cbcda755521392d61fa1b6e2d9d462b04a5 Mon Nov 4 10:14:38 2019 -0800
    New version number v390
• src/hg/lib/bigDbSnp.c
  • lines changed 12, context: html, text, full: html, text
    acca3deffc05c4d8d11590a1cf3d893763254712 Thu Oct 31 13:43:05 2019 -0700
    dbSnp153: Adding new ucscNotes suggested by Ana Benet: clinvar{Benign,Conflicting,Pathogenic}, rareAll, rareSome. refs #23283
  • lines changed 1, context: html, text, full: html, text
    b23bfd1da3c9926158cd96b7f73bf6b889c3d424 Thu Oct 31 14:06:35 2019 -0700
    Minor wording tweak, refs #23283
• src/hg/lib/hic.c
  • lines changed 1, context: html, text, full: html, text
    e4a0cde0a4bfd301c7d6e154873b84de784528fa Wed Oct 30 12:38:36 2019 -0700
    Count of retrieved records should be 0 when .hic files fail, refs #24403
• src/hg/lib/hicUi.c
  • lines changed 16, context: html, text, full: html, text
    2c21f6206ae7c0b230a2c05b6da14e64d7372215 Tue Oct 29 16:20:22 2019 -0700
    Improving auto-scale performance in Hi-C, fixing a bad assumption about the order of available resolutions in a list, refs #24308
• src/hg/lib/hubSearchText.as
  • lines changed 3, context: html, text, full: html, text
    a48e4a31e870414b9ed4a9731bf4ca694e6ff008 Wed Oct 30 11:36:15 2019 -0700
    Fixes to hub searching after code review: Angie noticed that links were broken due to a bug, but it turns out they were broken in a much bigger way as subtrack search hits were not linking out to the right parent tracks. This has been fixed by adding a new column to the hubSearchText table to encode the parent type of the parent tracks (comp, super, etc), and then building the links the correct way, refs #24338
• src/hg/lib/hubSearchText.c
  • lines changed 24, context: html, text, full: html, text
    a48e4a31e870414b9ed4a9731bf4ca694e6ff008 Wed Oct 30 11:36:15 2019 -0700
    Fixes to hub searching after code review: Angie noticed that links were broken due to a bug, but it turns out they were broken in a much bigger way as subtrack search hits were not linking out to the right parent tracks. This has been fixed by adding a new column to the hubSearchText table to encode the parent type of the parent tracks (comp, super, etc), and then building the links the correct way, refs #24338
• src/hg/lib/hubSearchText.sql
  • lines changed 3, context: html, text, full: html, text
    a48e4a31e870414b9ed4a9731bf4ca694e6ff008 Wed Oct 30 11:36:15 2019 -0700
    Fixes to hub searching after code review: Angie noticed that links were broken due to a bug, but it turns out they were broken in a much bigger way as subtrack search hits were not linking out to the right parent tracks. This has been fixed by adding a new column to the hubSearchText table to encode the parent type of the parent tracks (comp, super, etc), and then building the links the correct way, refs #24338
• src/hg/lib/hui.c
  • lines changed 15, context: html, text, full: html, text
    db1681c559128800c65ce174dc010343e6ea38d2 Thu Oct 31 13:45:12 2019 -0700
    bigDbSnp freqSource dropdown: clarify that 'GnomAD' is GnomAD genomes, thx Ana. refs #23283
  • lines changed 3, context: html, text, full: html, text
    08c8e7af6efdcb2902bda11d2b309c116565b413 Sun Nov 3 09:08:26 2019 -0800
    take #2 on implementing "autoScale group" in trackDb.
• src/hg/lib/trackHub.c
  • lines changed 2, context: html, text, full: html, text
    444e5309f1913159a90d5d3026cf35af7558b743 Thu Oct 31 14:58:20 2019 -0700
    Adding bigLolly to supprted hubCheck types, refs #24177
• src/hg/lib/wiggleCart.c
  • lines changed 5, context: html, text, full: html, text
    08c8e7af6efdcb2902bda11d2b309c116565b413 Sun Nov 3 09:08:26 2019 -0800
    take #2 on implementing "autoScale group" in trackDb.
• src/hg/makeDb/doc/bigDbSnp.txt
  • lines changed 27, context: html, text, full: html, text
    acca3deffc05c4d8d11590a1cf3d893763254712 Thu Oct 31 13:43:05 2019 -0700
    dbSnp153: Adding new ucscNotes suggested by Ana Benet: clinvar{Benign,Conflicting,Pathogenic}, rareAll, rareSome. refs #23283
• src/hg/makeDb/trackDb/crisprAll.html
  • lines changed 13, context: html, text, full: html, text
    343fea87263b7c29116af560510356a194e4da0b Tue Oct 29 12:51:15 2019 -0700
    Sprucing up the crisprAll html, and removing a hardcoded hg19 mention refs#24296
• src/hg/makeDb/trackDb/crisprAll.ra
  • lines changed 1, context: html, text, full: html, text
    4637cd3a50a2775ae60e4d35a76d3e420bf90cdb Fri Nov 1 10:24:00 2019 -0700
    Adding bigDataUrl to crisprAll track in order to drop pointer tables refs #24296
• src/hg/makeDb/trackDb/galVar/galVar1/cons5way.html
  • lines changed 2, context: html, text, full: html, text
    be2f3a5665e247fe81232a650da531a9fe2f9be1 Wed Oct 30 08:54:01 2019 -0700
    Updating http to https for galVar1, uiLinks cronjob
• src/hg/makeDb/trackDb/human/dbSnp153Composite.html
  • lines changed 36, context: html, text, full: html, text
    acca3deffc05c4d8d11590a1cf3d893763254712 Thu Oct 31 13:43:05 2019 -0700
    dbSnp153: Adding new ucscNotes suggested by Ana Benet: clinvar{Benign,Conflicting,Pathogenic}, rareAll, rareSome. refs #23283
  • lines changed 3, context: html, text, full: html, text
    b23bfd1da3c9926158cd96b7f73bf6b889c3d424 Thu Oct 31 14:06:35 2019 -0700
    Minor wording tweak, refs #23283
  • lines changed 16, context: html, text, full: html, text
    98407c7ac7f8fda3aec01535e17b92e3a5de8177 Fri Nov 1 14:53:38 2019 -0700
    Improving upon dbSNP's uneven descriptions of frequency-submitting projects. refs #23283
  • lines changed 3, context: html, text, full: html, text
    77a05dfd9799bd98b69d9d3f1604b19d8e3591b5 Fri Nov 1 14:59:11 2019 -0700
    typo fix: 152 -> 153, refs #23283
• src/hg/makeDb/trackDb/human/hg19/gnomad.html
  • lines changed 1, context: html, text, full: html, text
    83f03644efae69f762bf7a031d6e0ce4262c6de8 Mon Oct 28 15:40:49 2019 -0700
    Updating the hg19 gnomAD downloads link. Noticed it was dead due all lower case, no RM
• src/hg/makeDb/trackDb/human/hg19/rao2014Hic.html
  • lines changed 63, context: html, text, full: html, text
    18a0da2e5830f31261a2867590e366f540700dda Mon Oct 28 17:03:51 2019 -0700
    Updating the HTML lines to be less than 100 characters and using the HTML entity for double quotes, refs #24380 #24273
  • lines changed 3, context: html, text, full: html, text
    d051666f16ed4f55cde74dfda92919531110c2ca Mon Oct 28 17:06:26 2019 -0700
    Adding direct link to the .hic file for hg19, refs #24380 #24273
• src/hg/makeDb/trackDb/human/hg19/trackDb.gencode.ra
  • lines changed 1, context: html, text, full: html, text
    b36f6a6d55cd7adb1373a6f8f22147b0d6458427 Fri Nov 1 10:04:16 2019 -0700
    Removing stale pennantIcons, no RM
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    b36f6a6d55cd7adb1373a6f8f22147b0d6458427 Fri Nov 1 10:04:16 2019 -0700
    Removing stale pennantIcons, no RM
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV31lift37.ra
  • lines changed 1, context: html, text, full: html, text
    b36f6a6d55cd7adb1373a6f8f22147b0d6458427 Fri Nov 1 10:04:16 2019 -0700
    Removing stale pennantIcons, no RM
• src/hg/makeDb/trackDb/human/hg38/hicAndMicroC.html
  • lines changed 69, context: html, text, full: html, text
    d813f4744bb1eb1130558c0ca040dadbfb4324fd Mon Oct 28 16:42:36 2019 -0700
    Updating the line lengths to be less than 100 character and replacing double quotes with the HTML entity, refs #24380 #24273
  • lines changed 4, context: html, text, full: html, text
    e37b242cb757d58ff140f12feced1a727564be1d Mon Oct 28 16:47:42 2019 -0700
    Adding a link to the .hic files on hgdownload for hg38, refs #24380 #24273
• src/hg/makeDb/trackDb/human/hg38/knownGene.html
  • lines changed 4, context: html, text, full: html, text
    9b3d423dba454579883bcbbdc9119f26eec452c6 Fri Nov 1 13:00:31 2019 -0700
    Specifying the file knownGene was built from refs #24406
• src/hg/makeDb/trackDb/human/hg38/knownGene.ra
  • lines changed 1, context: html, text, full: html, text
    1135365a47a69524dd04881163be90b8389532b6 Tue Oct 29 09:16:23 2019 -0700
    Adding an updated pennant icon for hg38 and mm10 GENOCDE v32/vm23 release, refs #24087
• src/hg/makeDb/trackDb/human/hg38/trackDb.gencode.ra
  • lines changed 1, context: html, text, full: html, text
    b36f6a6d55cd7adb1373a6f8f22147b0d6458427 Fri Nov 1 10:04:16 2019 -0700
    Removing stale pennantIcons, no RM
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV31.ra
  • lines changed 1, context: html, text, full: html, text
    b36f6a6d55cd7adb1373a6f8f22147b0d6458427 Fri Nov 1 10:04:16 2019 -0700
    Removing stale pennantIcons, no RM
• src/hg/makeDb/trackDb/human/lovdComp.html
  • lines changed 116, context: html, text, full: html, text
    1afc00801fa1291d55a92e292f9fca3aa87b6566 Mon Nov 4 05:14:23 2019 -0800
    adding release tags for lovd and adding lovdComp.html, refs #24408
  • lines changed 8, context: html, text, full: html, text
    8de64f5db2e46f7e2694996a6d7a082b4bbabdcb Mon Nov 4 05:20:25 2019 -0800
    track docs update for lovd, refs #24408
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    acca3deffc05c4d8d11590a1cf3d893763254712 Thu Oct 31 13:43:05 2019 -0700
    dbSnp153: Adding new ucscNotes suggested by Ana Benet: clinvar{Benign,Conflicting,Pathogenic}, rareAll, rareSome. refs #23283
  • lines changed 1, context: html, text, full: html, text
    0d4a91ffec51c95e9e509b528f553d0bdb1adad8 Thu Oct 31 14:12:33 2019 -0700
    dbSnp153: oops, forgot to add rareAll and rareSome to ucscNotesFilterValues. refs #23283
  • lines changed 1, context: html, text, full: html, text
    a802e81d2d9370c88efa7153e9f3f4d5bec52e28 Thu Oct 31 16:32:54 2019 -0700
    Announcing the LRG update for hg19 and hg38, refs #24285
  • lines changed 20, context: html, text, full: html, text
    7330f07979130a5814186c51c0ed2ab036f9edaa Fri Nov 1 13:30:03 2019 -0700
    Tweak ucscNotes filter labels. refs #23283
  • lines changed 24, context: html, text, full: html, text
    40d29e81f3b815d0fbb56dd628a1c653933d3b3b Fri Nov 1 13:53:50 2019 -0700
    Added search specs for dbSnp153{Common,ClinVar,Mult} subset tracks. refs #23283
  • lines changed 23, context: html, text, full: html, text
    b98ba30fa69bf7ff12c58db12776589373e24e95 Mon Nov 4 05:04:51 2019 -0800
    splitting lovd track into composite with two subtracks, refs #24408
  • lines changed 15, context: html, text, full: html, text
    1afc00801fa1291d55a92e292f9fca3aa87b6566 Mon Nov 4 05:14:23 2019 -0800
    adding release tags for lovd and adding lovdComp.html, refs #24408
• src/hg/makeDb/trackDb/mouse/mm10/encode3RenChromHmm.html
  • lines changed 1, context: html, text, full: html, text
    4dc687fdbf86e8fa94ac9592f2798a3a0af61c7b Tue Oct 29 15:27:27 2019 -0700
    editing the description page for the encode3 ChromHMM track, refs #24128
• src/hg/makeDb/trackDb/mouse/mm10/encode3RenHistone.html
  • lines changed 7, context: html, text, full: html, text
    abfff073eab9fd41c06ba9c7ae4aa139524a5a54 Mon Oct 28 16:43:42 2019 -0700
    Editing description page for ENCODE 3 release, refs #23693
• src/hg/makeDb/trackDb/mouse/mm10/knownGene.ra
  • lines changed 1, context: html, text, full: html, text
    1135365a47a69524dd04881163be90b8389532b6 Tue Oct 29 09:16:23 2019 -0700
    Adding an updated pennant icon for hg38 and mm10 GENOCDE v32/vm23 release, refs #24087
• src/hg/makeDb/trackDb/rat/rn6/cons20way.html
  • lines changed 2, context: html, text, full: html, text
    043c00ff7a0400e11fece0e03d11811277e20b95 Mon Nov 4 09:31:47 2019 -0800
    Updating HTTP to HTTPS for rn6, uiLinks cronjob.
• src/hg/snp/dbSnpJsonToTab/dbSnpJsonToTab.c
  • lines changed 42, context: html, text, full: html, text
    acca3deffc05c4d8d11590a1cf3d893763254712 Thu Oct 31 13:43:05 2019 -0700
    dbSnp153: Adding new ucscNotes suggested by Ana Benet: clinvar{Benign,Conflicting,Pathogenic}, rareAll, rareSome. refs #23283
  • lines changed 8, context: html, text, full: html, text
    19da7bcf56ec86a80554a364d191d31b00d95f3e Fri Nov 1 13:51:49 2019 -0700
    dbSnpJsonToTab was including refIsMinor multiple times for same variant - fixed. refs #23283
• src/hg/utils/automation/categorizeBigDbSnp.pl
  • lines changed 80, context: html, text, full: html, text
    ab911e338fecf626957f119d86bea1075ec0bcfd Fri Nov 1 14:11:47 2019 -0700
    Oops, forgot to commit categorizeBigDbSnp.pl along with doBigDbSnp.pl when adding subset tracks. refs #23283
• src/hg/utils/bedPartition/bedPartition.c
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    99e41c7f76633c836d8788f2f99aa77d996519a2 Mon Oct 28 12:27:30 2019 -0700
    Added bedPartition program to calculate non-overlapping ranges in a BED file
• src/hg/utils/bedPartition/makefile
  • lines changed 3, context: html, text, full: html, text
    99e41c7f76633c836d8788f2f99aa77d996519a2 Mon Oct 28 12:27:30 2019 -0700
    Added bedPartition program to calculate non-overlapping ranges in a BED file
• src/hg/utils/bedPartition/tests/expected/test1.ranges.bed
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    99e41c7f76633c836d8788f2f99aa77d996519a2 Mon Oct 28 12:27:30 2019 -0700
    Added bedPartition program to calculate non-overlapping ranges in a BED file
• src/hg/utils/bedPartition/tests/input/mrna1.bed
  • lines changed 81, context: html, text, full: html, text
    99e41c7f76633c836d8788f2f99aa77d996519a2 Mon Oct 28 12:27:30 2019 -0700
    Added bedPartition program to calculate non-overlapping ranges in a BED file
• src/hg/utils/bedPartition/tests/makefile
  • lines changed 16, context: html, text, full: html, text
    99e41c7f76633c836d8788f2f99aa77d996519a2 Mon Oct 28 12:27:30 2019 -0700
    Added bedPartition program to calculate non-overlapping ranges in a BED file
• src/hg/utils/hubCrawl/hubCrawl.c
  • lines changed 25, context: html, text, full: html, text
    a48e4a31e870414b9ed4a9731bf4ca694e6ff008 Wed Oct 30 11:36:15 2019 -0700
    Fixes to hub searching after code review: Angie noticed that links were broken due to a bug, but it turns out they were broken in a much bigger way as subtrack search hits were not linking out to the right parent tracks. This has been fixed by adding a new column to the hubSearchText table to encode the parent type of the parent tracks (comp, super, etc), and then building the links the correct way, refs #24338
• src/hg/utils/makefile
  • lines changed 2, context: html, text, full: html, text
    99e41c7f76633c836d8788f2f99aa77d996519a2 Mon Oct 28 12:27:30 2019 -0700
    Added bedPartition program to calculate non-overlapping ranges in a BED file
• src/hg/utils/otto/lovd/checkAndLoad.sh
  • lines changed 17, context: html, text, full: html, text
    b98ba30fa69bf7ff12c58db12776589373e24e95 Mon Nov 4 05:04:51 2019 -0800
    splitting lovd track into composite with two subtracks, refs #24408
• src/inc/srcVersion.h
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    591e3cbcda755521392d61fa1b6e2d9d462b04a5 Mon Nov 4 10:14:38 2019 -0800
    New version number v390
• src/utils/chromFixer/chromFixer
  • lines changed 148, context: html, text, full: html, text
    7ebdab2ed06177da38613d236eaff100513ab57b Wed Oct 30 21:41:20 2019 -0700
    write chromFixer tool, refs #24407
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    564d7150acdd107cf31883feece7c11098d33740 Wed Oct 30 21:58:37 2019 -0700
    making chromFixer py3 compatible, refs #24407
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    4f577798b6f2ace7507b711d3189e42650ca7f83 Wed Oct 30 22:04:47 2019 -0700
    docs for chromFixer, refs #24407
• src/utils/chromFixer/hg19.chromAlias.tsv
  • lines changed 890, context: html, text, full: html, text
    7ebdab2ed06177da38613d236eaff100513ab57b Wed Oct 30 21:41:20 2019 -0700
    write chromFixer tool, refs #24407
• src/utils/chromFixer/hg38.chromAlias.tsv
  • lines changed 1785, context: html, text, full: html, text
    7ebdab2ed06177da38613d236eaff100513ab57b Wed Oct 30 21:41:20 2019 -0700
    write chromFixer tool, refs #24407
• src/utils/chromFixer/makefile
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    7ebdab2ed06177da38613d236eaff100513ab57b Wed Oct 30 21:41:20 2019 -0700
    write chromFixer tool, refs #24407
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    fb3a65112bfbf0e30ed266ca74d0e2ed7c8ec133 Sat Nov 2 05:02:12 2019 -0700
    fixing build bug, refs #24407
• src/utils/chromFixer/tests/expected/hg19.bed
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    7ebdab2ed06177da38613d236eaff100513ab57b Wed Oct 30 21:41:20 2019 -0700
    write chromFixer tool, refs #24407
• src/utils/chromFixer/tests/expected/mm10.bed
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    7ebdab2ed06177da38613d236eaff100513ab57b Wed Oct 30 21:41:20 2019 -0700
    write chromFixer tool, refs #24407
• src/utils/chromFixer/tests/in/hg19.bed
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    7ebdab2ed06177da38613d236eaff100513ab57b Wed Oct 30 21:41:20 2019 -0700
    write chromFixer tool, refs #24407
• src/utils/chromFixer/tests/in/mm10.bed
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    7ebdab2ed06177da38613d236eaff100513ab57b Wed Oct 30 21:41:20 2019 -0700
    write chromFixer tool, refs #24407
• src/utils/chromFixer/tests/makefile
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    7ebdab2ed06177da38613d236eaff100513ab57b Wed Oct 30 21:41:20 2019 -0700
    write chromFixer tool, refs #24407
• src/utils/makefile
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    7ebdab2ed06177da38613d236eaff100513ab57b Wed Oct 30 21:41:20 2019 -0700
    write chromFixer tool, refs #24407
• src/utils/qa/weeklybld/buildEnv.csh
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    8e861dc0be3f722f3241144474d59bad6d4d9472 Mon Nov 4 10:13:21 2019 -0800
    v390 final build, refs #24359

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