All File Changes

v390_base to v391_preview (2019-11-04 to 2019-11-11) v391

• confs/asia.hg.conf
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    885442790e557118101d38bf9ea18fb229621678 Sun Nov 10 01:11:51 2019 -0800
    Installing updated hg.conf files from UCSC servers
• confs/euro.hg.conf
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    885442790e557118101d38bf9ea18fb229621678 Sun Nov 10 01:11:51 2019 -0800
    Installing updated hg.conf files from UCSC servers
• confs/hgwbeta.hg.conf
  • lines changed 3, context: html, text, full: html, text
    885442790e557118101d38bf9ea18fb229621678 Sun Nov 10 01:11:51 2019 -0800
    Installing updated hg.conf files from UCSC servers
• confs/rr.hg.conf
  • lines changed 2, context: html, text, full: html, text
    885442790e557118101d38bf9ea18fb229621678 Sun Nov 10 01:11:51 2019 -0800
    Installing updated hg.conf files from UCSC servers
• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 2, context: html, text, full: html, text
    64b6a6ca9fc9176eb191e2cc2ad6360b980de876 Fri Nov 8 14:29:29 2019 -0800
    fix link without lastDbPos in hgHubConnect
• src/hg/hgTracks/bigBedTrack.c
  • lines changed 28, context: html, text, full: html, text
    336446810facfb8bd5fe6665f736d647d7dc20c0 Thu Nov 7 10:18:44 2019 -0800
    remove brain-dead code that made a distinction between floats and ints in number filtering
  • lines changed 22, context: html, text, full: html, text
    1bda3889beb9b9247998d9153dee94ca7d13810c Sun Nov 10 16:16:48 2019 -0800
    allow yet another way to specify bigBed filters. This allows specifications of the form "filter*.fieldName"
• src/hg/hgTracks/hgTracks.c
  • lines changed 3, context: html, text, full: html, text
    43cc16d8d72f686e8652637128a13c4fd4851c56 Thu Nov 7 14:58:11 2019 -0800
    add logging of current position in error_log
• src/hg/htdocs/FAQ/FAQformat.html
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    f4ace97438e173daf68c76153a4481de73879798 Fri Nov 8 16:46:02 2019 -0800
    Initial commit of supporting docs for hic track type, refs #22316
• src/hg/htdocs/FAQ/FAQgenes.html
  • lines changed 1, context: html, text, full: html, text
    69df4c45e4eaa694a1a376c7716d5fab97b43cdb Fri Nov 8 11:29:41 2019 -0800
    Fixing Pennant icon and making a typo correction No RM
• src/hg/htdocs/goldenPath/help/bigWig.html
  • lines changed 1, context: html, text, full: html, text
    6ee69e5f785ad30ae6171af8b740d2f00f4778a0 Mon Nov 4 12:53:08 2019 -0800
    add autoScale group to doc
• src/hg/htdocs/goldenPath/help/hgHicTrackHelp.html
  • lines changed 96, context: html, text, full: html, text
    f4ace97438e173daf68c76153a4481de73879798 Fri Nov 8 16:46:02 2019 -0800
    Initial commit of supporting docs for hic track type, refs #22316
• src/hg/htdocs/goldenPath/help/hgSessionHelp.html
  • lines changed 1, context: html, text, full: html, text
    f7519f02a4fcac58f44b6436d0bffffc79b5a53d Fri Nov 8 15:47:45 2019 -0800
    Minor text changes to catch up with our new session expiration policy, no ticket
• src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
  • lines changed 56, context: html, text, full: html, text
    f4ace97438e173daf68c76153a4481de73879798 Fri Nov 8 16:46:02 2019 -0800
    Initial commit of supporting docs for hic track type, refs #22316
• src/hg/htdocs/goldenPath/help/hgTracksHelp.html
  • lines changed 3, context: html, text, full: html, text
    f7519f02a4fcac58f44b6436d0bffffc79b5a53d Fri Nov 8 15:47:45 2019 -0800
    Minor text changes to catch up with our new session expiration policy, no ticket
• src/hg/htdocs/goldenPath/help/hic.html
  • lines changed 151, context: html, text, full: html, text
    f4ace97438e173daf68c76153a4481de73879798 Fri Nov 8 16:46:02 2019 -0800
    Initial commit of supporting docs for hic track type, refs #22316
  • lines changed 1, context: html, text, full: html, text
    0ac4f70c8e22a3831b01aa51ccc1a5f36bad0b04 Fri Nov 8 16:58:18 2019 -0800
    Minor formatting/corrections, no ticket
• src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html
  • lines changed 1, context: html, text, full: html, text
    6ee69e5f785ad30ae6171af8b740d2f00f4778a0 Mon Nov 4 12:53:08 2019 -0800
    add autoScale group to doc
  • lines changed 29, context: html, text, full: html, text
    f4ace97438e173daf68c76153a4481de73879798 Fri Nov 8 16:46:02 2019 -0800
    Initial commit of supporting docs for hic track type, refs #22316
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html
  • lines changed 1, context: html, text, full: html, text
    6ee69e5f785ad30ae6171af8b740d2f00f4778a0 Mon Nov 4 12:53:08 2019 -0800
    add autoScale group to doc
  • lines changed 26, context: html, text, full: html, text
    f4ace97438e173daf68c76153a4481de73879798 Fri Nov 8 16:46:02 2019 -0800
    Initial commit of supporting docs for hic track type, refs #22316
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 7, context: html, text, full: html, text
    6ee69e5f785ad30ae6171af8b740d2f00f4778a0 Mon Nov 4 12:53:08 2019 -0800
    add autoScale group to doc
  • lines changed 11, context: html, text, full: html, text
    abf5388a059de9f58c5af4c38b786cb947514fe5 Mon Nov 4 14:25:53 2019 -0800
    fixing typo and adding notes in group autoScale feature #24365
  • lines changed 34, context: html, text, full: html, text
    f4ace97438e173daf68c76153a4481de73879798 Fri Nov 8 16:46:02 2019 -0800
    Initial commit of supporting docs for hic track type, refs #22316
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 22, context: html, text, full: html, text
    6e3693e403c2c4ac5f6ed33641b900e023a4cea6 Mon Nov 4 13:49:32 2019 -0800
    Preparing to release mm10 refs #24296
  • lines changed 10, context: html, text, full: html, text
    ddb902a45def533aa68aa2dc7a7213f7fe3cdbe1 Mon Nov 4 16:33:15 2019 -0800
    Fixing 9 broken links, some for CR#24420
• src/hg/htdocs/goldenPath/pubs.html
  • lines changed 9, context: html, text, full: html, text
    572b11c0ce7ccde00f260472aca48f972c1b022f Wed Nov 6 09:04:16 2019 -0800
    Adding the latest Browser NAR paper to the pubs.html
  • lines changed 0, context: html, text, full: html, text
    63bbcb1778c11963b7c731bbfea33a31913ca8ce Wed Nov 6 09:27:26 2019 -0800
    removing whitespace on pubs.html
• src/hg/htdocs/images/mm10CrisprAll.png
  • lines changed 0, context: html, text, full: html, text
    6e3693e403c2c4ac5f6ed33641b900e023a4cea6 Mon Nov 4 13:49:32 2019 -0800
    Preparing to release mm10 refs #24296
• src/hg/htdocs/images/round_build_black_18dp.png
  • lines changed 0, context: html, text, full: html, text
    9d81235b0452e72118cc4821639a62905839f6f6 Tue Nov 5 07:26:55 2019 -0800
    fixing test, refs #24407
• src/hg/htdocs/indexNews.html
  • lines changed 13, context: html, text, full: html, text
    6e3693e403c2c4ac5f6ed33641b900e023a4cea6 Mon Nov 4 13:49:32 2019 -0800
    Preparing to release mm10 refs #24296
• src/hg/htdocs/training/index.html
  • lines changed 3, context: html, text, full: html, text
    9d708d064a00c8cc409afb5296191d7c42f69dcc Fri Nov 8 10:14:17 2019 -0800
    added link to Duke workshop
  • lines changed 9, context: html, text, full: html, text
    6a115409d6d740f7f4dd232fee7272b91b6636e8 Fri Nov 8 12:52:17 2019 -0800
    adding link to Lou's UOregon workshop
• src/hg/inc/bigBedFilter.h
  • lines changed 1, context: html, text, full: html, text
    a2b887e7bae9377807d176890e0958f4a10edecb Mon Nov 4 14:28:40 2019 -0800
    add FilterLabel for labeling bigBed filters
  • lines changed 40, context: html, text, full: html, text
    1bda3889beb9b9247998d9153dee94ca7d13810c Sun Nov 10 16:16:48 2019 -0800
    allow yet another way to specify bigBed filters. This allows specifications of the form "filter*.fieldName"
• src/hg/inc/hicUi.h
  • lines changed 1, context: html, text, full: html, text
    69172d33dd3695228085e7d1cb574c2d85678b69 Fri Nov 8 16:18:04 2019 -0800
    Changing default hic draw mode to triangle after feedback, refs #22316
• src/hg/inc/hui.h
  • lines changed 4, context: html, text, full: html, text
    1bda3889beb9b9247998d9153dee94ca7d13810c Sun Nov 10 16:16:48 2019 -0800
    allow yet another way to specify bigBed filters. This allows specifications of the form "filter*.fieldName"
• src/hg/inc/trackDb.h
  • lines changed 1, context: html, text, full: html, text
    1bda3889beb9b9247998d9153dee94ca7d13810c Sun Nov 10 16:16:48 2019 -0800
    allow yet another way to specify bigBed filters. This allows specifications of the form "filter*.fieldName"
• src/hg/js/ddcl.js
  • lines changed 1, context: html, text, full: html, text
    1dc4c848cde9fc9d738fc07841fd4e83e6df20a4 Mon Nov 4 11:38:07 2019 -0800
    Adding triangle icon to all drop-down checklists with class=filterBy. Thx Ana. refs #23283
• src/hg/js/utils.js
  • lines changed 2, context: html, text, full: html, text
    890fdad386e5451ba705effa51a3877bce2e4bdb Mon Nov 4 14:26:54 2019 -0800
    added a comment about a function that doesn't work right when an assembly database name has a '.' in it
• src/hg/lib/hui.c
  • lines changed 24, context: html, text, full: html, text
    a2b887e7bae9377807d176890e0958f4a10edecb Mon Nov 4 14:28:40 2019 -0800
    add FilterLabel for labeling bigBed filters
  • lines changed 45, context: html, text, full: html, text
    336446810facfb8bd5fe6665f736d647d7dc20c0 Thu Nov 7 10:18:44 2019 -0800
    remove brain-dead code that made a distinction between floats and ints in number filtering
  • lines changed 206, context: html, text, full: html, text
    1bda3889beb9b9247998d9153dee94ca7d13810c Sun Nov 10 16:16:48 2019 -0800
    allow yet another way to specify bigBed filters. This allows specifications of the form "filter*.fieldName"
• src/hg/makeDb/doc/bigDbSnp.txt
  • lines changed 11, context: html, text, full: html, text
    356c96fb811f1c8649d7685de33011877268d062 Tue Nov 5 10:35:31 2019 -0800
    dbSnp153: rebuild to get correct counts of diffMajor and refIsMinor. refs #23283
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    f0872f4adaa41af355cf492134407abc595e3830 Thu Nov 7 14:55:11 2019 -0800
    Rebuild bigDbSnp153 after fixing VCF allele normalization in dbSnpJsonToTab. refs #23283
• src/hg/makeDb/doc/encode3/mouse.txt
  • lines changed 27, context: html, text, full: html, text
    ca0956d5875613b43a613fec972e069e2b45ab30 Wed Nov 6 08:57:43 2019 -0800
    Add build scripts to source control. refs #23880
  • lines changed 109, context: html, text, full: html, text
    8f288a664a2b8c73a3a5cbf0507905f89ff17e05 Wed Nov 6 11:05:03 2019 -0800
    Cleanup make doc. refs #23881
• src/hg/makeDb/doc/epdNew.txt
  • lines changed 51, context: html, text, full: html, text
    8abcf1db290578d553d43cf559bf6b987681442b Tue Nov 5 17:26:04 2019 -0800
    Polish track configurations and descriptions. refs #23888
• src/hg/makeDb/doc/hg38/gnomad.txt
  • lines changed 27, context: html, text, full: html, text
    2e2155ca3de501f17408b1cb11ff074a3ccb4b2c Tue Nov 5 12:03:43 2019 -0800
    Add gnomAD variants for hg38. refs #21782
• src/hg/makeDb/doc/hg38/multiz30way.txt
  • lines changed 106, context: html, text, full: html, text
    8b84f22d1b235ac3dcc37d35e2c051d3e6e36292 Wed Nov 6 14:08:46 2019 -0800
    generate new CDS FASTA files for multiz30way
• src/hg/makeDb/outside/encode3/mouse/README.txt
  • lines changed 3, context: html, text, full: html, text
    ca0956d5875613b43a613fec972e069e2b45ab30 Wed Nov 6 08:57:43 2019 -0800
    Add build scripts to source control. refs #23880
• src/hg/makeDb/outside/encode3/mouse/makeChromHmmTrackDb.pl
  • lines changed 38, context: html, text, full: html, text
    ca0956d5875613b43a613fec972e069e2b45ab30 Wed Nov 6 08:57:43 2019 -0800
    Add build scripts to source control. refs #23880
• src/hg/makeDb/outside/encode3/mouse/makeInteract.pl
  • lines changed 255, context: html, text, full: html, text
    ca0956d5875613b43a613fec972e069e2b45ab30 Wed Nov 6 08:57:43 2019 -0800
    Add build scripts to source control. refs #23880
• src/hg/makeDb/outside/encode3/mouse/mergeInteractReps.pl
  • lines changed 62, context: html, text, full: html, text
    ca0956d5875613b43a613fec972e069e2b45ab30 Wed Nov 6 08:57:43 2019 -0800
    Add build scripts to source control. refs #23880
• src/hg/makeDb/trackDb/epdNewPromoter.html
  • lines changed 80, context: html, text, full: html, text
    8abcf1db290578d553d43cf559bf6b987681442b Tue Nov 5 17:26:04 2019 -0800
    Polish track configurations and descriptions. refs #23888
  • lines changed 1, context: html, text, full: html, text
    849a921db0a5f5e89040171e9da31fc63d2aef0d Tue Nov 5 17:28:14 2019 -0800
    Minor edit. refs #23888
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    25b689184439ed910a6804062466c7ce30495646 Wed Nov 6 15:51:52 2019 -0800
    More methods overview -- very brief summary of pipeline docs. refs #23888
• src/hg/makeDb/trackDb/human/dbSnp153Composite.html
  • lines changed 4, context: html, text, full: html, text
    356c96fb811f1c8649d7685de33011877268d062 Tue Nov 5 10:35:31 2019 -0800
    dbSnp153: rebuild to get correct counts of diffMajor and refIsMinor. refs #23283
  • lines changed 4, context: html, text, full: html, text
    76dc0f3ea238bf75a5b62153f225e04bd4e29f3c Tue Nov 5 12:07:48 2019 -0800
    label/description tweaks suggested by Lou. refs #23283
  • lines changed 4, context: html, text, full: html, text
    b0132bc5984bafde279db01449f27699aefde0a3 Thu Nov 7 14:51:58 2019 -0800
    Reworded revStrand description, thx Lou. refs #23283
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    5b813e92e0af87cf6f4492fc227c974309330db0 Fri Nov 8 15:48:05 2019 -0800
    Adding references to dbSNP153 refs#23283
• src/hg/makeDb/trackDb/human/hg19/rao2014Hic.html
  • lines changed 1, context: html, text, full: html, text
    1d919b290c8de964ffd23ccf8388517ac217d05b Fri Nov 8 15:49:06 2019 -0800
    Minor changes to trackDb html for hic tracks on hg19 and hg38, no ticket
  • lines changed 1, context: html, text, full: html, text
    0ac4f70c8e22a3831b01aa51ccc1a5f36bad0b04 Fri Nov 8 16:58:18 2019 -0800
    Minor formatting/corrections, no ticket
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 17, context: html, text, full: html, text
    8abcf1db290578d553d43cf559bf6b987681442b Tue Nov 5 17:26:04 2019 -0800
    Polish track configurations and descriptions. refs #23888
  • lines changed 1, context: html, text, full: html, text
    7fc67f7c0d409822a83b94113bea02abeef2b569 Wed Nov 6 08:21:02 2019 -0800
    Remove problematic and unnecessary release tags. refs #23888
• src/hg/makeDb/trackDb/human/hg38/hicAndMicroC.html
  • lines changed 3, context: html, text, full: html, text
    1d919b290c8de964ffd23ccf8388517ac217d05b Fri Nov 8 15:49:06 2019 -0800
    Minor changes to trackDb html for hic tracks on hg19 and hg38, no ticket
  • lines changed 1, context: html, text, full: html, text
    0ac4f70c8e22a3831b01aa51ccc1a5f36bad0b04 Fri Nov 8 16:58:18 2019 -0800
    Minor formatting/corrections, no ticket
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 35, context: html, text, full: html, text
    8abcf1db290578d553d43cf559bf6b987681442b Tue Nov 5 17:26:04 2019 -0800
    Polish track configurations and descriptions. refs #23888
  • lines changed 1, context: html, text, full: html, text
    7fc67f7c0d409822a83b94113bea02abeef2b569 Wed Nov 6 08:21:02 2019 -0800
    Remove problematic and unnecessary release tags. refs #23888
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    76dc0f3ea238bf75a5b62153f225e04bd4e29f3c Tue Nov 5 12:07:48 2019 -0800
    label/description tweaks suggested by Lou. refs #23283
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    1eb62c61ee677b7a3c90cc77465dcbeacec479ce Tue Nov 5 13:30:58 2019 -0800
    Oops, forgot to add some values to ucscNotesFilterValues. refs #23283
  • lines changed 13, context: html, text, full: html, text
    8abcf1db290578d553d43cf559bf6b987681442b Tue Nov 5 17:26:04 2019 -0800
    Polish track configurations and descriptions. refs #23888
• src/hg/makeDb/trackDb/lamprey/petMar1/multiz6way.html
  • lines changed 3, context: html, text, full: html, text
    198d6a37942482573c4420c4d28b839282b665dc Fri Nov 8 10:30:19 2019 -0800
    Updating http to https for petMar1, uiLinks cronjob.
• src/hg/makeDb/trackDb/lamprey/petMar1/phastConsElements6way.html
  • lines changed 1, context: html, text, full: html, text
    198d6a37942482573c4420c4d28b839282b665dc Fri Nov 8 10:30:19 2019 -0800
    Updating http to https for petMar1, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/mm10/encode3.histone.ra
  • lines changed 3, context: html, text, full: html, text
    4694cf962a5317db178ee853bb955305b914a630 Mon Nov 4 12:18:02 2019 -0800
    Defer adding hideEmptySubtracks to Mouse Histones track. refs #23365
• src/hg/makeDb/trackDb/mouse/mm10/encode3RenEnhancerGene.html
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    36d1da99ada6f8f121c02b750c738d8d9cf3cc61 Wed Nov 6 15:12:49 2019 -0800
    Expand and polish track description. refs #23881
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    5aedf5cc144d7a928ed8de617f63ba256cd25f82 Wed Nov 6 15:50:21 2019 -0800
    More description polishing. refs #23381
• src/hg/makeDb/trackDb/mouse/mm10/encode3RenEnhancerGene.ra
  • lines changed 13, context: html, text, full: html, text
    6befb4068d107f7646a74747afa24adc47ebac43 Wed Nov 6 10:32:07 2019 -0800
    Polish track labels and colors. refs #23881
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    011938a47976ffaa251f09892e18f975a88aa2fb Wed Nov 6 15:13:32 2019 -0800
    Expand and polish track description. refs #23881
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    69df4c45e4eaa694a1a376c7716d5fab97b43cdb Fri Nov 8 11:29:41 2019 -0800
    Fixing Pennant icon and making a typo correction No RM
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.encode3.ra
  • lines changed 1, context: html, text, full: html, text
    69df4c45e4eaa694a1a376c7716d5fab97b43cdb Fri Nov 8 11:29:41 2019 -0800
    Fixing Pennant icon and making a typo correction No RM
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    6e3693e403c2c4ac5f6ed33641b900e023a4cea6 Mon Nov 4 13:49:32 2019 -0800
    Preparing to release mm10 refs #24296
  • lines changed 34, context: html, text, full: html, text
    8abcf1db290578d553d43cf559bf6b987681442b Tue Nov 5 17:26:04 2019 -0800
    Polish track configurations and descriptions. refs #23888
  • lines changed 1, context: html, text, full: html, text
    7fc67f7c0d409822a83b94113bea02abeef2b569 Wed Nov 6 08:21:02 2019 -0800
    Remove problematic and unnecessary release tags. refs #23888
• src/hg/makeDb/trackDb/refGene.html
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    fbe36917fa06d2ce0148760497a2d821efaf9ba0 Wed Nov 6 10:25:48 2019 -0800
    Adding a link to FAQ genes page no RM
• src/hg/makeDb/trackDb/zebrafish/danRer6/multiz6way.html
  • lines changed 3, context: html, text, full: html, text
    a091bcc459271e7a382caddb2055fefcb1b3462d Fri Nov 8 10:58:19 2019 -0800
    Updating http to https for danRer6, uiLinks cronjob.
• src/hg/snp/dbSnpJsonToTab/dbSnpJsonToTab.c
  • lines changed 16, context: html, text, full: html, text
    aba80d9c6d410fb7d9caf9a4b58fe1aefe2fe6bb Tue Nov 5 14:41:46 2019 -0800
    If alleles from VCF have not been minimalized but can't be expanded either, use the minimal version to get rid of extra left base. refs #23283
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    4eee2fe1d4677db4a6c43ab43fbff6ea72acd318 Wed Nov 6 15:03:00 2019 -0800
    Need to consider all alleles together when trimming extra bases from freq alleles. refs #23283
• src/makefile
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    c67566f6e81f825be0d93c664ad82757082fcae0 Thu Nov 7 06:41:28 2019 -0800
    adding branch protection suggested by Kate and originally from MarkD: if you're not on the master branch, you cannot run 'make cgi-alpha' or 'make alpha' anymore. This hopefully protects hgwdev from my own stupidity. No redmine, but related to various build error messages and threads to browser-staff over the last few days.
• src/utils/chromFixer/chromFixer
  • lines changed 151, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/chromFixer/hg19.chromAlias.tsv
  • lines changed 890, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/chromFixer/hg38.chromAlias.tsv
  • lines changed 1785, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/chromFixer/makefile
  • lines changed 9, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/chromFixer/tests/expected/hg19.bed
  • lines changed 1, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/chromFixer/tests/expected/mm10.bed
  • lines changed 2, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/chromFixer/tests/in/hg19.bed
  • lines changed 2, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/chromFixer/tests/in/mm10.bed
  • lines changed 2, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/chromFixer/tests/makefile
  • lines changed 5, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
  • lines changed 1, context: html, text, full: html, text
    9d81235b0452e72118cc4821639a62905839f6f6 Tue Nov 5 07:26:55 2019 -0800
    fixing test, refs #24407
• src/utils/chromFixer/tests/mm10.chromAlias.tsv
  • lines changed 154, context: html, text, full: html, text
    369670e8f1e34a12f871e1c7a682455cc6625f62 Tue Nov 5 15:57:55 2019 +0100
    forgot to commit a test file for chromFixer
  • lines changed 154, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/chromToUcsc/chromToUcsc
  • lines changed 153, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/chromToUcsc/hg19.chromAlias.tsv
  • lines changed 890, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/chromToUcsc/hg38.chromAlias.tsv
  • lines changed 1785, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/chromToUcsc/makefile
  • lines changed 12, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
  • lines changed 2, context: html, text, full: html, text
    a3f8d3e1a145ec0893cc654891bcc40c6291c2d7 Wed Nov 6 14:30:33 2019 -0800
    use DESTBINDIR not BINDIR
• src/utils/chromToUcsc/tests/expected/hg19.bed
  • lines changed 1, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/chromToUcsc/tests/expected/mm10.bed
  • lines changed 2, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/chromToUcsc/tests/in/hg19.bed
  • lines changed 2, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/chromToUcsc/tests/in/mm10.bed
  • lines changed 2, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/chromToUcsc/tests/makefile
  • lines changed 5, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
  • lines changed 2, context: html, text, full: html, text
    6a0cf4baa7b72e5e17e68ffa357ac6abe474cc67 Tue Nov 5 14:22:53 2019 -0800
    removing output from tests for chromToUcsc, refs #24407
  • lines changed 2, context: html, text, full: html, text
    fa980de88752d46a65744d71de7ad813961d4948 Thu Nov 7 06:46:00 2019 -0800
    renamed chromFixer to chromToUcsc
  • lines changed 2, context: html, text, full: html, text
    7d7c308bd9179bd340bcac7d0c80c7c930f45fcf Thu Nov 7 07:29:38 2019 -0800
    fixing yet another broken build
• src/utils/chromToUcsc/tests/mm10.chromAlias.tsv
  • lines changed 154, context: html, text, full: html, text
    4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 Tue Nov 5 16:24:55 2019 +0100
    renaming chromFixer to chromToUcsc, refs #24407
• src/utils/makefile
  • lines changed 1, context: html, text, full: html, text
    ca2af7511d7ec668de3bc164254bf8f8b1ca67b2 Tue Nov 5 23:07:58 2019 +0100
    hopefully the last chromToUcsc thing that broke the build...
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    c59df0037d6bd1b32d797558e227681161ea3ab4 Mon Nov 11 09:59:25 2019 -0800
    v391 preview1, refs #24359

• lines changed: 8220
• files changed: 117