File Changes for markd

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v450_preview to v450_preview2 (2023-06-12 to 2023-06-20) v450

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src/hg/blastToPsl/pslBuild.c
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  b8d545da050a4050b3f0ae6af8fa93ac8ce6c6a3 Sun Jun 11 14:52:31 2023 -0700
  fixed incorrect calculation of indels causes by fix to pslTEnd() on protein/dna PSLs
src/hg/lib/hgHgvs.c
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  2b50ebde25b8ad6c5a43797ae0ceb85ae66fd0bc Sun Jun 11 13:58:19 2023 -0700
  fixed a couple of calls to pslTransMap to add new alignments
src/hg/makeDb/doc/chm13v2.0userData/build.txt
- lines changed 452, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/doc/chm13v2.0_CytoBandMapping.readme.txt
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  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/doc/chm13v2.0_CytoBandMapping.tsv
- lines changed 863, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/catLiftOffGenesV1.html
- lines changed 104, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/censat.html
- lines changed 34, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/clinVar20220313.html
- lines changed 14, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/dbSNP155.html
- lines changed 14, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/encode.html
- lines changed 41, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/gwasSNPs2022-03-08.html
- lines changed 14, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/hgCactus.html
- lines changed 44, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/hgLiftOver.html
- lines changed 251, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/hgUnique.html
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  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/microsatellites.html
- lines changed 31, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/proseq.html
- lines changed 57, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/rdnaModel.html
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  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/rnaseq.html
- lines changed 68, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/sedefSegDups.html
- lines changed 43, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/sgdpCopyNumber.html
- lines changed 33, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/t2tRepeatMasker.bigRmsk.html
- lines changed 488, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/html/t2tRepeatMasker.html
- lines changed 153, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/makefile
- lines changed 80, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/schema/cenSat.as
- lines changed 14, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/schema/sedefSegDups.as
- lines changed 48, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/catLiftOffGenesV1.trackDb.txt
- lines changed 16, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/censat.trackDb.txt
- lines changed 11, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/clinVar20220313.trackDb.txt
- lines changed 9, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/cytoBandMapped.trackDb.txt
- lines changed 8, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/dbSNP155.trackDb.txt
- lines changed 9, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/encode.trackDb.txt
- lines changed 1601, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/gwasSNPs2022-03-08.trackDb.txt
- lines changed 9, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/hgCactus.trackDb.txt
- lines changed 46, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/hgLiftOver.trackDb.txt
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  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/hgUnique.trackDb.txt
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  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/microsatellites.trackDb.txt
- lines changed 48, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/proseq.trackDb.txt
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  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/rdnaModel.trackDb.txt
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  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/rnaseq.trackDb.txt
- lines changed 46, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/sedefSegDups.trackDb.txt
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  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/sgdpCopyNumber.trackDb.txt
- lines changed 3498, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/makeDb/doc/chm13v2.0userData/trackDb/t2tRepeatMasker.trackDb.txt
- lines changed 14, context: html, text, full: html, text
  4492d656288371cb1802c3a38217acb11bde6368 Thu Jun 15 11:45:05 2023 -0700
  removed obsolete attempt to integrate CHM13 with GenArk
src/hg/pslCDnaFilter/hapRegions.c
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  2b50ebde25b8ad6c5a43797ae0ceb85ae66fd0bc Sun Jun 11 13:58:19 2023 -0700
  fixed a couple of calls to pslTransMap to add new alignments
src/inc/psl.h
- lines changed 3, context: html, text, full: html, text
  ba66786a683bce0f6c38efbdcad60686984478b4 Sun Jun 11 13:12:41 2023 -0700
  correctly handle getting target block end on protein/rna PSLs
- lines changed 36, context: html, text, full: html, text
  0919ab12c7fff4d83613273cad9d7a13b1af668c Mon Jun 12 19:29:34 2023 -0700
  allow pslMapPostChain handle protein/NA alignments
src/inc/pslTransMap.h
- lines changed 12, context: html, text, full: html, text
  a97f8a0fffb31a2b3521e573a03f454fb60275d3 Tue May 30 21:30:12 2023 -0700
  Add mechnaism to fix problem with mapping prot-prot via prot-na alignment by explictly specifying the type of alignments
src/lib/pslTransMap.c
- lines changed 1, context: html, text, full: html, text
  195a08fae15bd2ca55f2f2ed11d0c359521efcc4 Wed May 17 09:13:21 2023 -0700
  added program to convert protein/protein or protein NA PSLs to NA/NA PSLs. The multiplies coordinates by three; trimming any overlapping blocks that might be creates. This is intended to use with pslMap
- lines changed 118, context: html, text, full: html, text
  a97f8a0fffb31a2b3521e573a03f454fb60275d3 Tue May 30 21:30:12 2023 -0700
  Add mechnaism to fix problem with mapping prot-prot via prot-na alignment by explictly specifying the type of alignments
- lines changed 38, context: html, text, full: html, text
  a4887527b333527019132f93bfcebab37e594b5a Sat Jun 10 12:17:57 2023 -0700
  added tests for various mapping PSL type modes and fixed mode checking bug
src/utils/makefile
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  195a08fae15bd2ca55f2f2ed11d0c359521efcc4 Wed May 17 09:13:21 2023 -0700
  added program to convert protein/protein or protein NA PSLs to NA/NA PSLs. The multiplies coordinates by three; trimming any overlapping blocks that might be creates. This is intended to use with pslMap
src/utils/pslMap/pslMap.c
- lines changed 26, context: html, text, full: html, text
  a97f8a0fffb31a2b3521e573a03f454fb60275d3 Tue May 30 21:30:12 2023 -0700
  Add mechnaism to fix problem with mapping prot-prot via prot-na alignment by explictly specifying the type of alignments
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  a4887527b333527019132f93bfcebab37e594b5a Sat Jun 10 12:17:57 2023 -0700
  added tests for various mapping PSL type modes and fixed mode checking bug
src/utils/pslMap/tests/expected/testProtNa_NaNa.psl
- lines changed 1, context: html, text, full: html, text
  a4887527b333527019132f93bfcebab37e594b5a Sat Jun 10 12:17:57 2023 -0700
  added tests for various mapping PSL type modes and fixed mode checking bug
src/utils/pslMap/tests/expected/testProtPort_ProtNa.mapinfo
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  a4887527b333527019132f93bfcebab37e594b5a Sat Jun 10 12:17:57 2023 -0700
  added tests for various mapping PSL type modes and fixed mode checking bug
src/utils/pslMap/tests/expected/testProtPort_ProtNa.psl
- lines changed 1, context: html, text, full: html, text
  a4887527b333527019132f93bfcebab37e594b5a Sat Jun 10 12:17:57 2023 -0700
  added tests for various mapping PSL type modes and fixed mode checking bug
src/utils/pslMap/tests/expected/testProtPort_ProtProt.psl
- lines changed 1, context: html, text, full: html, text
  a4887527b333527019132f93bfcebab37e594b5a Sat Jun 10 12:17:57 2023 -0700
  added tests for various mapping PSL type modes and fixed mode checking bug
src/utils/pslMap/tests/expected/testProtProt_NaNa.psl
- lines changed 1, context: html, text, full: html, text
  a4887527b333527019132f93bfcebab37e594b5a Sat Jun 10 12:17:57 2023 -0700
  added tests for various mapping PSL type modes and fixed mode checking bug
src/utils/pslMap/tests/expected/testSpGencode.mapinfo
- lines changed 1, context: html, text, full: html, text
  a97f8a0fffb31a2b3521e573a03f454fb60275d3 Tue May 30 21:30:12 2023 -0700
  Add mechnaism to fix problem with mapping prot-prot via prot-na alignment by explictly specifying the type of alignments
- lines changed 2, context: html, text, full: html, text
  a4887527b333527019132f93bfcebab37e594b5a Sat Jun 10 12:17:57 2023 -0700
  added tests for various mapping PSL type modes and fixed mode checking bug
src/utils/pslMap/tests/expected/testSpGencode.psl
- lines changed 1, context: html, text, full: html, text
  a97f8a0fffb31a2b3521e573a03f454fb60275d3 Tue May 30 21:30:12 2023 -0700
  Add mechnaism to fix problem with mapping prot-prot via prot-na alignment by explictly specifying the type of alignments
- lines changed 1, context: html, text, full: html, text
  a4887527b333527019132f93bfcebab37e594b5a Sat Jun 10 12:17:57 2023 -0700
  added tests for various mapping PSL type modes and fixed mode checking bug
src/utils/pslMap/tests/expected/testTypeErr.err
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  a97f8a0fffb31a2b3521e573a03f454fb60275d3 Tue May 30 21:30:12 2023 -0700
  Add mechnaism to fix problem with mapping prot-prot via prot-na alignment by explictly specifying the type of alignments
src/utils/pslMap/tests/input/gencodeGenome.psl
- lines changed 1, context: html, text, full: html, text
  a4887527b333527019132f93bfcebab37e594b5a Sat Jun 10 12:17:57 2023 -0700
  added tests for various mapping PSL type modes and fixed mode checking bug
src/utils/pslMap/tests/makefile
- lines changed 7, context: html, text, full: html, text
  a97f8a0fffb31a2b3521e573a03f454fb60275d3 Tue May 30 21:30:12 2023 -0700
  Add mechnaism to fix problem with mapping prot-prot via prot-na alignment by explictly specifying the type of alignments
- lines changed 30, context: html, text, full: html, text
  a4887527b333527019132f93bfcebab37e594b5a Sat Jun 10 12:17:57 2023 -0700
  added tests for various mapping PSL type modes and fixed mode checking bug
src/utils/pslMap/usage.txt
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  a97f8a0fffb31a2b3521e573a03f454fb60275d3 Tue May 30 21:30:12 2023 -0700
  Add mechnaism to fix problem with mapping prot-prot via prot-na alignment by explictly specifying the type of alignments
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  2b563cb9c48b6c8a7f8774cd229f9129d16e8a19 Wed Jun 14 13:49:05 2023 -0700
  fixed typo in help message
src/utils/pslMapPostChain/pslMapPostChain.c
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  ba66786a683bce0f6c38efbdcad60686984478b4 Sun Jun 11 13:12:41 2023 -0700
  correctly handle getting target block end on protein/rna PSLs
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  0919ab12c7fff4d83613273cad9d7a13b1af668c Mon Jun 12 19:29:34 2023 -0700
  allow pslMapPostChain handle protein/NA alignments
src/utils/pslMapPostChain/tests/expected/blastProtRnaTest.psl
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  ba66786a683bce0f6c38efbdcad60686984478b4 Sun Jun 11 13:12:41 2023 -0700
  correctly handle getting target block end on protein/rna PSLs
- lines changed 3, context: html, text, full: html, text
  0919ab12c7fff4d83613273cad9d7a13b1af668c Mon Jun 12 19:29:34 2023 -0700
  allow pslMapPostChain handle protein/NA alignments
src/utils/pslMapPostChain/tests/input/blastProtRna.psl
- lines changed 5, context: html, text, full: html, text
  ba66786a683bce0f6c38efbdcad60686984478b4 Sun Jun 11 13:12:41 2023 -0700
  correctly handle getting target block end on protein/rna PSLs
- lines changed 5, context: html, text, full: html, text
  0919ab12c7fff4d83613273cad9d7a13b1af668c Mon Jun 12 19:29:34 2023 -0700
  allow pslMapPostChain handle protein/NA alignments
src/utils/pslMapPostChain/tests/makefile
- lines changed 6, context: html, text, full: html, text
  ba66786a683bce0f6c38efbdcad60686984478b4 Sun Jun 11 13:12:41 2023 -0700
  correctly handle getting target block end on protein/rna PSLs
- lines changed 2, context: html, text, full: html, text
  0919ab12c7fff4d83613273cad9d7a13b1af668c Mon Jun 12 19:29:34 2023 -0700
  allow pslMapPostChain handle protein/NA alignments
src/utils/pslProtToRnaCoords/makefile
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  195a08fae15bd2ca55f2f2ed11d0c359521efcc4 Wed May 17 09:13:21 2023 -0700
  added program to convert protein/protein or protein NA PSLs to NA/NA PSLs. The multiplies coordinates by three; trimming any overlapping blocks that might be creates. This is intended to use with pslMap
src/utils/pslProtToRnaCoords/pslProtToRnaCoords.c
- lines changed 139, context: html, text, full: html, text
  195a08fae15bd2ca55f2f2ed11d0c359521efcc4 Wed May 17 09:13:21 2023 -0700
  added program to convert protein/protein or protein NA PSLs to NA/NA PSLs. The multiplies coordinates by three; trimming any overlapping blocks that might be creates. This is intended to use with pslMap
src/utils/pslProtToRnaCoords/tests/expected/kgProtTest.psl
- lines changed 59, context: html, text, full: html, text
  195a08fae15bd2ca55f2f2ed11d0c359521efcc4 Wed May 17 09:13:21 2023 -0700
  added program to convert protein/protein or protein NA PSLs to NA/NA PSLs. The multiplies coordinates by three; trimming any overlapping blocks that might be creates. This is intended to use with pslMap
- lines changed 38, context: html, text, full: html, text
  34230d5e9cd5cfe7eb8651f3582a8d776aa9c7b3 Thu Jun 15 16:19:37 2023 -0700
  updated test results based on fixes elsewhere
src/utils/pslProtToRnaCoords/tests/expected/spAnnotTest.psl
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  195a08fae15bd2ca55f2f2ed11d0c359521efcc4 Wed May 17 09:13:21 2023 -0700
  added program to convert protein/protein or protein NA PSLs to NA/NA PSLs. The multiplies coordinates by three; trimming any overlapping blocks that might be creates. This is intended to use with pslMap
src/utils/pslProtToRnaCoords/tests/expected/spGencodeTest.psl
- lines changed 88, context: html, text, full: html, text
  195a08fae15bd2ca55f2f2ed11d0c359521efcc4 Wed May 17 09:13:21 2023 -0700
  added program to convert protein/protein or protein NA PSLs to NA/NA PSLs. The multiplies coordinates by three; trimming any overlapping blocks that might be creates. This is intended to use with pslMap
src/utils/pslProtToRnaCoords/tests/expected/spIsoCanonTest.psl
- lines changed 1, context: html, text, full: html, text
  195a08fae15bd2ca55f2f2ed11d0c359521efcc4 Wed May 17 09:13:21 2023 -0700
  added program to convert protein/protein or protein NA PSLs to NA/NA PSLs. The multiplies coordinates by three; trimming any overlapping blocks that might be creates. This is intended to use with pslMap
src/utils/pslProtToRnaCoords/tests/input/swissprotAnnotsToProt.psl
- lines changed 1, context: html, text, full: html, text
  195a08fae15bd2ca55f2f2ed11d0c359521efcc4 Wed May 17 09:13:21 2023 -0700
  added program to convert protein/protein or protein NA PSLs to NA/NA PSLs. The multiplies coordinates by three; trimming any overlapping blocks that might be creates. This is intended to use with pslMap
src/utils/pslProtToRnaCoords/tests/input/swissprotGencode.psl
- lines changed 88, context: html, text, full: html, text
  195a08fae15bd2ca55f2f2ed11d0c359521efcc4 Wed May 17 09:13:21 2023 -0700
  added program to convert protein/protein or protein NA PSLs to NA/NA PSLs. The multiplies coordinates by three; trimming any overlapping blocks that might be creates. This is intended to use with pslMap
src/utils/pslProtToRnaCoords/tests/input/swissprotIsoCanon.psl
- lines changed 1, context: html, text, full: html, text
  195a08fae15bd2ca55f2f2ed11d0c359521efcc4 Wed May 17 09:13:21 2023 -0700
  added program to convert protein/protein or protein NA PSLs to NA/NA PSLs. The multiplies coordinates by three; trimming any overlapping blocks that might be creates. This is intended to use with pslMap
src/utils/pslProtToRnaCoords/tests/makefile
- lines changed 42, context: html, text, full: html, text
  195a08fae15bd2ca55f2f2ed11d0c359521efcc4 Wed May 17 09:13:21 2023 -0700
  added program to convert protein/protein or protein NA PSLs to NA/NA PSLs. The multiplies coordinates by three; trimming any overlapping blocks that might be creates. This is intended to use with pslMap

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