All File Changes

v470_preview to v470_preview2 (2024-08-12 to 2024-08-19) v470

• confs/asia.hg.conf
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    6947d7ff8ae17c3ea851323cc5ca05257fa63d78 Sun Aug 18 01:11:24 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/euro.hg.conf
  • lines changed 3, context: html, text, full: html, text
    6947d7ff8ae17c3ea851323cc5ca05257fa63d78 Sun Aug 18 01:11:24 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/hgwbeta.hg.conf
  • lines changed 2, context: html, text, full: html, text
    6947d7ff8ae17c3ea851323cc5ca05257fa63d78 Sun Aug 18 01:11:24 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/rr.hg.conf
  • lines changed 3, context: html, text, full: html, text
    6947d7ff8ae17c3ea851323cc5ca05257fa63d78 Sun Aug 18 01:11:24 2024 -0700
    Installing updated hg.conf files from UCSC servers
• src/blat/blat.c
  • lines changed 3, context: html, text, full: html, text
    4e6512b9b01495cb58e13d6b5a2245c3a28cd4d2 Tue Aug 13 14:13:44 2024 -0700
    mention the PSL filter commands on the blat output page, email from someone
• src/hg/cgilib/cartEdit5.c
  • lines changed 9, context: html, text, full: html, text
    4652765bd72b72b8360715448dd5874c93c79eb5 Sat Aug 17 15:07:44 2024 -0700
    cartRewrite. If an old session has gnomadVariantsV4 set then set gnomadVariantsV4.1 to the same value
• src/hg/cgilib/cartRewrite.c
  • lines changed 12, context: html, text, full: html, text
    4652765bd72b72b8360715448dd5874c93c79eb5 Sat Aug 17 15:07:44 2024 -0700
    cartRewrite. If an old session has gnomadVariantsV4 set then set gnomadVariantsV4.1 to the same value
• src/hg/cgilib/makefile
  • lines changed 1, context: html, text, full: html, text
    4652765bd72b72b8360715448dd5874c93c79eb5 Sat Aug 17 15:07:44 2024 -0700
    cartRewrite. If an old session has gnomadVariantsV4 set then set gnomadVariantsV4.1 to the same value
• src/hg/hgGene/synonym.c
  • lines changed 21, context: html, text, full: html, text
    61baacb2558c51f93fe4219337d4b5a0b21a6faa Tue Aug 13 22:16:36 2024 -0700
    hgGene will start linking to our ncbiRefSeq track instead of refGene, refs #34291
• src/hg/hgTables/intersect.c
  • lines changed 8, context: html, text, full: html, text
    f91588820743d9970f0700b44cba9fbecac98bf3 Wed Aug 14 09:26:32 2024 -0700
    changing text after feedback from QA, refs #34268
• src/hg/hgTables/mainPage.c
  • lines changed 4, context: html, text, full: html, text
    f91588820743d9970f0700b44cba9fbecac98bf3 Wed Aug 14 09:26:32 2024 -0700
    changing text after feedback from QA, refs #34268
• src/hg/hgTracks/hgTracks.c
  • lines changed 11, context: html, text, full: html, text
    ca709fce58415c5e5d8b83717c61a3821d2968dc Tue Aug 13 06:53:10 2024 -0700
    fix some weird html in hgTracks, refs #34256
  • lines changed 18, context: html, text, full: html, text
    08ec0b5265b884be1c7885ebe73db95515beca0d Fri Aug 16 11:27:45 2024 -0700
    Basic support for multiple decorators, refs #32644
• src/hg/hgTracks/simpleTracks.c
  • lines changed 1, context: html, text, full: html, text
    abe71d11dfe601a7110cfe32cbc90606b332bc2e Sat Aug 17 16:10:17 2024 -0700
    if limiting visibility to density mode, set the trackDb type to "wig" so the javascript understands what's going on.
• src/hg/htdocs/assemblySearch.html
  • lines changed 109, context: html, text, full: html, text
    fe68c1b1ff0235428aefefd9e8f68679f73f3fd6 Sat Aug 17 07:16:35 2024 -0700
    initial prototype code for assemblySearch function refs #32596
  • lines changed 7, context: html, text, full: html, text
    0956e5536532f162f20c601bc3cfbf65705ef85e Sat Aug 17 08:15:54 2024 -0700
    fixup to work in this new location refs #32596
• src/hg/htdocs/contacts.html
  • lines changed 2, context: html, text, full: html, text
    81feeac03535aa9d3645216f8607175966b6c685 Tue Aug 13 18:57:22 2024 -0700
    Small tweaks from QA feedback, refs #33487
• src/hg/htdocs/goldenPath/help/hgTracksHelp.html
  • lines changed 3, context: html, text, full: html, text
    aab2968b33510e69f67d493f0dab4f956bc8931e Tue Aug 13 13:46:17 2024 -0700
    Fixing Coordinate Counting link, refs #34288
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 27, context: html, text, full: html, text
    402499d2b0c1740a020abe56fd818e36da17df20 Mon Aug 12 16:00:31 2024 -0700
    Announcing the SpliceAI tracks for hg38 and hg19, refs #27141
  • lines changed 29, context: html, text, full: html, text
    ec36719c2512042954514a774bc6cb9719de826c Wed Aug 14 09:41:51 2024 -0700
    Announcing the new pop-up dialogue box for item details feature, refs #33216
• src/hg/htdocs/images/ItemDetails_knownGene.png
  • lines changed 0, context: html, text, full: html, text
    ec36719c2512042954514a774bc6cb9719de826c Wed Aug 14 09:41:51 2024 -0700
    Announcing the new pop-up dialogue box for item details feature, refs #33216
• src/hg/htdocs/images/configure_ItemDetails.png
  • lines changed 0, context: html, text, full: html, text
    ec36719c2512042954514a774bc6cb9719de826c Wed Aug 14 09:41:51 2024 -0700
    Announcing the new pop-up dialogue box for item details feature, refs #33216
• src/hg/htdocs/images/tutorialImages/trackSearch.png
  • lines changed 0, context: html, text, full: html, text
    d4b8ab651e8af6a95e4640734b7f4b3761d80664 Fri Aug 16 17:37:49 2024 -0700
    Adding an image for the clinical tutorial, refs #33732
• src/hg/htdocs/indexNews.html
  • lines changed 12, context: html, text, full: html, text
    402499d2b0c1740a020abe56fd818e36da17df20 Mon Aug 12 16:00:31 2024 -0700
    Announcing the SpliceAI tracks for hg38 and hg19, refs #27141
  • lines changed 12, context: html, text, full: html, text
    ec36719c2512042954514a774bc6cb9719de826c Wed Aug 14 09:41:51 2024 -0700
    Announcing the new pop-up dialogue box for item details feature, refs #33216
• src/hg/htdocs/style/assemblySearch.css
  • lines changed 165, context: html, text, full: html, text
    fe68c1b1ff0235428aefefd9e8f68679f73f3fd6 Sat Aug 17 07:16:35 2024 -0700
    initial prototype code for assemblySearch function refs #32596
• src/hg/hubApi/dataApi.h
  • lines changed 2, context: html, text, full: html, text
    0fdfd6d6edc06c6b9899fd1013e99fb1515babcb Fri Aug 16 00:10:32 2024 -0700
    now with the browserExists argument to eliminate the allowAll refs #32897
  • lines changed 1, context: html, text, full: html, text
    04d9a71891504b2be49c6e72e9e2f80183a4b22b Fri Aug 16 14:44:31 2024 -0700
    eliminate allowAll argument, return used search string even when modified, return total assembly count available refs #32897
• src/hg/hubApi/findGenome.c
  • lines changed 156, context: html, text, full: html, text
    5a00dc1ab5eaaaf1776558e2fedc99997471eb73 Tue Aug 13 14:38:20 2024 -0700
    ready to start cleaning up refs #32897
  • lines changed 389, context: html, text, full: html, text
    f8c0ad0bbd396785452c18d9fc3473cfb75c73a5 Tue Aug 13 15:47:21 2024 -0700
    much cleaner at this time removed all the previous experiments refs #32897
  • lines changed 38, context: html, text, full: html, text
    a52bdc2dcb5068501fbc48696d7ad85e8fb2608e Tue Aug 13 17:57:48 2024 -0700
    eliminate the DBG statements and get the query string construction into a dyPrintf refs #32897
  • lines changed 23, context: html, text, full: html, text
    afabfb46d123af83f0b66b48fb2d229c9fbc4df7 Wed Aug 14 16:32:27 2024 -0700
    efficient use of the SQL count function when statsOnly refs #32897
  • lines changed 53, context: html, text, full: html, text
    5d9ee32b367b0cce28e02c83b20101ecbd8e8c3d Fri Aug 16 00:09:46 2024 -0700
    now with the browserExists argument to eliminate the allowAll refs #32897
  • lines changed 36, context: html, text, full: html, text
    04d9a71891504b2be49c6e72e9e2f80183a4b22b Fri Aug 16 14:44:31 2024 -0700
    eliminate allowAll argument, return used search string even when modified, return total assembly count available refs #32897
  • lines changed 12, context: html, text, full: html, text
    659e1bb4271552d1d1056c529298fbccb039f95d Sat Aug 17 08:29:32 2024 -0700
    recording stats on results to stderr for apache error_log refs #32596
• src/hg/hubApi/hubApi.c
  • lines changed 1, context: html, text, full: html, text
    a86dc83b44e3ef6ebbbe914cfba5ee145e52482e Tue Aug 13 18:17:14 2024 -0700
    correct set of arguments for findGenome refs #32897
  • lines changed 1, context: html, text, full: html, text
    0fdfd6d6edc06c6b9899fd1013e99fb1515babcb Fri Aug 16 00:10:32 2024 -0700
    now with the browserExists argument to eliminate the allowAll refs #32897
  • lines changed 1, context: html, text, full: html, text
    04d9a71891504b2be49c6e72e9e2f80183a4b22b Fri Aug 16 14:44:31 2024 -0700
    eliminate allowAll argument, return used search string even when modified, return total assembly count available refs #32897
• src/hg/inc/assemblyList.h
  • lines changed 12, context: html, text, full: html, text
    3e420ec829635a0f80f3790b312ab555d3ff2240 Tue Aug 13 18:03:07 2024 -0700
    helper function assemblyListTableName() refs #32897
• src/hg/inc/cart.h
  • lines changed 3, context: html, text, full: html, text
    4652765bd72b72b8360715448dd5874c93c79eb5 Sat Aug 17 15:07:44 2024 -0700
    cartRewrite. If an old session has gnomadVariantsV4 set then set gnomadVariantsV4.1 to the same value
• src/hg/inc/decoratorUi.h
  • lines changed 4, context: html, text, full: html, text
    08ec0b5265b884be1c7885ebe73db95515beca0d Fri Aug 16 11:27:45 2024 -0700
    Basic support for multiple decorators, refs #32644
• src/hg/inc/hdb.h
  • lines changed 7, context: html, text, full: html, text
    403e6092c8f4d9bd86c8f78292677997a9adcf89 Mon Aug 12 15:04:16 2024 -0700
    Adding warning about changing hReplaceGbdb affecting straw, refs #27851
  • lines changed 5, context: html, text, full: html, text
    45c26f5159bd9d55840ce1efa611df6039fe8a36 Tue Aug 13 06:58:22 2024 -0700
    small function docs changes to hdb.h
• src/hg/js/assemblySearch.js
  • lines changed 153, context: html, text, full: html, text
    fe68c1b1ff0235428aefefd9e8f68679f73f3fd6 Sat Aug 17 07:16:35 2024 -0700
    initial prototype code for assemblySearch function refs #32596
  • lines changed 1, context: html, text, full: html, text
    0956e5536532f162f20c601bc3cfbf65705ef85e Sat Aug 17 08:15:54 2024 -0700
    fixup to work in this new location refs #32596
  • lines changed 15, context: html, text, full: html, text
    ff24452dd4f8ae69c2f45c1fc481b71abbafb406 Sat Aug 17 23:52:49 2024 -0700
    refresh the header row so the sorttable will function properly refs #32596
• src/hg/js/tutorials/clinicalTutorial.js
  • lines changed 2, context: html, text, full: html, text
    59809ca72c9ed4decaa96747b27bdd9fd98581e6 Wed Aug 14 11:29:01 2024 -0700
    Fixing a bug with the tutorial that prevented the RTS popup from appearing again if you selected the option from the bluebar menu. refs #33732
  • lines changed 8, context: html, text, full: html, text
    1c0ef0875edbfa9bf4333537db3fe2474f8d7e4e Fri Aug 16 15:20:51 2024 -0700
    Undoing a the previous 'bug fix'. The fix made the RTS popup no longer appear. Will fix later with the tutorial buttons. Adding Anna's suggestions to the tutorial, refs #33732
• src/hg/js/tutorials/tutorial.js
  • lines changed 5, context: html, text, full: html, text
    7d3894e986304746f7982078f500f7feb843544d Mon Aug 12 16:52:06 2024 -0700
    Adding a note about how 'pack' mode is the preferred visibility. Moving the tutorial step to the 'Base Position' track drop-down menu, refs #25938
• src/hg/lib/assemblyList.c
  • lines changed 16, context: html, text, full: html, text
    3e420ec829635a0f80f3790b312ab555d3ff2240 Tue Aug 13 18:03:07 2024 -0700
    helper function assemblyListTableName() refs #32897
• src/hg/lib/decoratorUi.c
  • lines changed 58, context: html, text, full: html, text
    08ec0b5265b884be1c7885ebe73db95515beca0d Fri Aug 16 11:27:45 2024 -0700
    Basic support for multiple decorators, refs #32644
  • lines changed 18, context: html, text, full: html, text
    a051ecbf26183d97dd114d7f19f5f6130536f9f8 Fri Aug 16 12:16:29 2024 -0700
    decorator UI should now respect trackDb settings for blockMode and glyphMode. Also removed an unused variable. refs #34111
• src/hg/lib/hui.c
  • lines changed 10, context: html, text, full: html, text
    632d91991149700af031438008b9270e366cf830 Fri Aug 16 11:01:01 2024 -0700
    Adds support for multiple filterBy sets on the same page, refs #32644
• src/hg/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    1d9a7f5d0c88114f17c93574fb726a230a98e3f7 Tue Aug 13 18:07:40 2024 -0700
    adding assemblyList.o to the library refs #32897
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 3, context: html, text, full: html, text
    fc4f7ec33eee5a715faa117b1e2afb9fcb8a82c6 Mon Aug 12 16:44:38 2024 -0700
    update adds 3 assemblies refs #29545
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    ca99ea9edfabe1feb9d487551a5c227f7dc1bca4 Mon Aug 12 16:47:32 2024 -0700
    obsolete assembly name GCA_018852615.2_ASM1885261v2 becomes GCA_018852615.2_Q100_hg002v1.0.1.mat refs #29545
  • lines changed 1, context: html, text, full: html, text
    395c03c87d8620ad52f4760aa39e2b0e6b1bda24 Fri Aug 16 13:13:24 2024 -0700
    adding GCA_000845665.1_ViralProj14458 Murine herpesvirus 68 (WUMS 2007) per user request refs #29545
• src/hg/makeDb/doc/bosTau9/lastzRuns.txt
  • lines changed 161, context: html, text, full: html, text
    c5a0639c12640fb8d4688ccb7acbd1298713ee33 Wed Aug 14 17:56:58 2024 -0700
    Running some liftOver chains requested by 2 MLQs.
• src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    a51acc6579a07f61464e35002581cb8860eb18d5 Mon Aug 12 13:09:36 2024 -0700
    legacy genbank yeast assembly refs #29545
• src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt
  • lines changed 1, context: html, text, full: html, text
    cc23002f01956ee7defd57193092deb9223e7e52 Mon Aug 12 13:06:30 2024 -0700
    legacy genbank yeast assembly refs #29545
• src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    cc23002f01956ee7defd57193092deb9223e7e52 Mon Aug 12 13:06:30 2024 -0700
    legacy genbank yeast assembly refs #29545
• src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    234509cf8d35819a18c9abdcd2f551d33e28fb8a Mon Aug 12 13:03:12 2024 -0700
    assembly has changed its name, temporarily out of action here, no redmine
• src/hg/makeDb/doc/susScr11/lastzRuns.txt
  • lines changed 158, context: html, text, full: html, text
    c5a0639c12640fb8d4688ccb7acbd1298713ee33 Wed Aug 14 17:56:58 2024 -0700
    Running some liftOver chains requested by 2 MLQs.
• src/hg/makeDb/doc/ucscGenes/mm39.gencodeVM36.sh
  • lines changed 52, context: html, text, full: html, text
    5c6591502a68acc328ae00d0cbc31a61891fa9f9 Fri Aug 16 08:31:23 2024 -0700
    Makedoc for knownGene VM36 on mm39, refs #34218
• src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    2a3cf8e64ff3246c8f8b9d7171f13fb1d07cbdce Mon Aug 12 13:04:49 2024 -0700
    VGP update adding tailed frog haplotypes refs #29545
• src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    395c03c87d8620ad52f4760aa39e2b0e6b1bda24 Fri Aug 16 13:13:24 2024 -0700
    adding GCA_000845665.1_ViralProj14458 Murine herpesvirus 68 (WUMS 2007) per user request refs #29545
• src/hg/makeDb/trackDb/human/hg19/predictionScoresSuper.html
  • lines changed 6, context: html, text, full: html, text
    2a1ac1729311108bb1af8ad8053ecf43d67a56d4 Thu Aug 15 15:48:40 2024 -0700
    Adding documentation that explains maxAF and the track differences between 'with maxAF' and 'without maxAF', refs #33796
• src/hg/makeDb/trackDb/human/hg38/gnomad.alpha.ra
  • lines changed 27, context: html, text, full: html, text
    1103593507b742077ffea2d229c3a4a6e19fbc19 Fri Aug 16 13:44:18 2024 -0700
    Moving the gnomAD v4.1 SV stanza to the gnomad.alpha.ra file, refs #33823
  • lines changed 3, context: html, text, full: html, text
    da7a1fec09cbc157f37f67ab2a11233309e489b4 Fri Aug 16 15:41:54 2024 -0700
    Get gnomad v4.1 constraint tracks visible on hgwdev. Fix v4.1 subgroup setting
  • lines changed 1, context: html, text, full: html, text
    4652765bd72b72b8360715448dd5874c93c79eb5 Sat Aug 17 15:07:44 2024 -0700
    cartRewrite. If an old session has gnomadVariantsV4 set then set gnomadVariantsV4.1 to the same value
• src/hg/makeDb/trackDb/human/hg38/gnomad.constraint.alpha.ra
  • lines changed 1, context: html, text, full: html, text
    dbcb305bb448d3b53a8d692e189901fd1ff81d97 Fri Aug 16 10:53:18 2024 -0700
    Fix view setting for constraint v4.1 track, refs #34252
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    da7a1fec09cbc157f37f67ab2a11233309e489b4 Fri Aug 16 15:41:54 2024 -0700
    Get gnomad v4.1 constraint tracks visible on hgwdev. Fix v4.1 subgroup setting
• src/hg/makeDb/trackDb/human/hg38/gnomad.ra
  • lines changed 1, context: html, text, full: html, text
    da7a1fec09cbc157f37f67ab2a11233309e489b4 Fri Aug 16 15:41:54 2024 -0700
    Get gnomad v4.1 constraint tracks visible on hgwdev. Fix v4.1 subgroup setting
• src/hg/makeDb/trackDb/human/hg38/gnomadSv.alpha.ra
  • lines changed 289, context: html, text, full: html, text
    1103593507b742077ffea2d229c3a4a6e19fbc19 Fri Aug 16 13:44:18 2024 -0700
    Moving the gnomAD v4.1 SV stanza to the gnomad.alpha.ra file, refs #33823
• src/hg/makeDb/trackDb/human/hg38/primates11way.html
  • lines changed 9, context: html, text, full: html, text
    9231a1e85252bf75c90f5e545bed1aca9acdffa4 Mon Aug 12 13:48:03 2024 -0700
    correct position=lastDbPos on the assembly hubs no redmine
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    28655163d830a39ed7c078d184077e97b944dd12 Fri Aug 16 15:29:31 2024 -0700
    Updating the trackDb.ra due to moving the gnomAD v4.1 SV stanza into the gnomad.alpha.ra file, refs #33823
  • lines changed 1, context: html, text, full: html, text
    da7a1fec09cbc157f37f67ab2a11233309e489b4 Fri Aug 16 15:41:54 2024 -0700
    Get gnomad v4.1 constraint tracks visible on hgwdev. Fix v4.1 subgroup setting
• src/hg/makeDb/trackDb/human/hs1/primates11way.html
  • lines changed 9, context: html, text, full: html, text
    5a99f2bfa1172d32fa041ee9dfb7e2c5ed28befe Mon Aug 12 13:47:33 2024 -0700
    correct position=lastDbPos on the assembly hubs no redmine
• src/hg/makeDb/trackDb/human/omim.ra
  • lines changed 17, context: html, text, full: html, text
    d46d9e2daef609ed67e3b5c4a1d8ceddc70450c1 Wed Aug 14 15:54:35 2024 -0700
    Restructuring OMIM to be in a superTrack, refs #25682
• src/hg/makeDb/trackDb/human/spliceAI.html
  • lines changed 71, context: html, text, full: html, text
    754f88bccf3da4feb7cf1f988ddd13e692b0870e Wed Aug 14 16:58:39 2024 -0700
    Moving the Data Access and License sections to the bottom of the page. Making the 'Important' section to the top. Adding sections suggested by Anna, refs #27141
• src/hg/makeDb/trackDb/human/spliceAI.ra
  • lines changed 1, context: html, text, full: html, text
    754f88bccf3da4feb7cf1f988ddd13e692b0870e Wed Aug 14 16:58:39 2024 -0700
    Moving the Data Access and License sections to the bottom of the page. Making the 'Important' section to the top. Adding sections suggested by Anna, refs #27141
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    d46d9e2daef609ed67e3b5c4a1d8ceddc70450c1 Wed Aug 14 15:54:35 2024 -0700
    Restructuring OMIM to be in a superTrack, refs #25682
• src/hg/makeDb/trackDb/mouse/mm39/knownGene.alpha.ra
  • lines changed 6, context: html, text, full: html, text
    67b9ab362ade34958f9da38f4a92c8263ba8c31c Thu Aug 15 15:39:34 2024 -0700
    VM36 knownGene trackDb
• src/hg/makeDb/trackDb/mouse/mm39/knownGeneArchive.ra
  • lines changed 22, context: html, text, full: html, text
    1f733e2211b1f5f6d1c279a117f26d9e058dfdae Thu Aug 15 15:42:48 2024 -0700
    Adding VM35 knownGene to knownGene Archive, refs #34218
• src/hg/makeDb/trackDb/mouse/mm39/knownGeneVM36.html
  • lines changed 123, context: html, text, full: html, text
    67b9ab362ade34958f9da38f4a92c8263ba8c31c Thu Aug 15 15:39:34 2024 -0700
    VM36 knownGene trackDb
• src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    67b9ab362ade34958f9da38f4a92c8263ba8c31c Thu Aug 15 15:39:34 2024 -0700
    VM36 knownGene trackDb
• src/hg/utils/otto/genArk/updateHgcentral.sh
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    ffe3440ffaebf92cdab371616731c5b0bae27c62 Thu Aug 15 12:04:39 2024 -0700
    the addAssemblyList needs to run each week even if the other business needs no update refs #32897
• src/hg/utils/otto/otto.crontab
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    7d5d51db544997c9bd9e0046e2135d587b97743a Thu Aug 15 13:13:00 2024 -0700
    Removing updateNewsSec cronjob.
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    d8af197ed4080d38a369b91463671f4f68b187c8 Fri Aug 16 00:01:08 2024 -0700
    Adding pubtator lines to otto crontab
• src/lib/bbiRead.c
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    043ed5add3d6a0d24037a85b53b43ac9e14211c6 Sat Aug 17 13:06:42 2024 -0700
    fix a couple of bugs when reduction level sizes have the 31st bit set.
• src/utils/bigWigInfo/bigWigInfo.c
  • lines changed 1, context: html, text, full: html, text
    043ed5add3d6a0d24037a85b53b43ac9e14211c6 Sat Aug 17 13:06:42 2024 -0700
    fix a couple of bugs when reduction level sizes have the 31st bit set.
• src/utils/qa/weeklybld/buildEnv.csh
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    03a1deed0d7a3f41f11c49bd49f6aee070ea49ba Mon Aug 19 11:25:30 2024 -0700
    v470 preview2, refs #34278

• lines changed: 2498
• files changed: 92