File Changes for jcasper

v472_preview2 to v472_base (2024-09-30 to 2024-10-07) v472

• confs/asia.hg.conf
  • lines changed 6, context: html, text, full: html, text
    641180ca8796b2ecea29edaee9c46ad617a35835 Sun Oct 6 01:11:21 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/euro.hg.conf
  • lines changed 6, context: html, text, full: html, text
    641180ca8796b2ecea29edaee9c46ad617a35835 Sun Oct 6 01:11:21 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/hgwdev.hg.conf
  • lines changed 6, context: html, text, full: html, text
    641180ca8796b2ecea29edaee9c46ad617a35835 Sun Oct 6 01:11:21 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/rr.hg.conf
  • lines changed 6, context: html, text, full: html, text
    641180ca8796b2ecea29edaee9c46ad617a35835 Sun Oct 6 01:11:21 2024 -0700
    Installing updated hg.conf files from UCSC servers
• src/hg/hgLiftOver/hgLiftOver.c
  • lines changed 17, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/inc/liftOver.h
  • lines changed 7, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    14e458a2850b153c5abf5c8cc329accdb0047d37 Mon Oct 7 15:09:22 2024 -0700
    New version number v472
• src/hg/lib/liftOver.c
  • lines changed 67, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
  • lines changed 5, context: html, text, full: html, text
    2d6c8b5aa593976bc312cb3111d9d4cd7b46938a Wed Oct 2 09:29:18 2024 -0700
    Position liftovers need to clean up temp files when they're done, refs #28023
• src/hg/liftOver/liftOver.c
  • lines changed 15, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/expected/bed12Preserve.bed
  • lines changed 2, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/expected/bed3Preserve.bed
  • lines changed 2, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/expected/genePredPreserve.gp
  • lines changed 3, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/expected/gffPreserve.gff
  • lines changed 6, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/expected/gtfPreserve.gtf
  • lines changed 5, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/expected/positionPreserve.pos
  • lines changed 1, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/expected/pslPreserve.psl
  • lines changed 6, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/expected/samplePreserve.sample
  • lines changed 2, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/input/bed12Preserve.bed
  • lines changed 2, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/input/bed3Preserve.bed
  • lines changed 2, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/input/genePredPreserve.gp
  • lines changed 3, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/input/gffPreserve.gff
  • lines changed 3, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/input/gtfPreserve.gtf
  • lines changed 5, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/input/positionPreserve.pos
  • lines changed 1, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/input/pslPreserve.psl
  • lines changed 3, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/input/samplePreserve.sample
  • lines changed 3, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/makefile
  • lines changed 70, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
  • lines changed 4, context: html, text, full: html, text
    2d6c8b5aa593976bc312cb3111d9d4cd7b46938a Wed Oct 2 09:29:18 2024 -0700
    Position liftovers need to clean up temp files when they're done, refs #28023
• src/inc/srcVersion.h
  • lines changed 1, context: html, text, full: html, text
    14e458a2850b153c5abf5c8cc329accdb0047d37 Mon Oct 7 15:09:22 2024 -0700
    New version number v472
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    04d6dae916262b3d2c4b15aef684cea90cf1f1e5 Mon Oct 7 15:08:00 2024 -0700
    v472 final build, refs #34490