All File Changes

v471_base to v472_preview (2024-09-16 to 2024-09-23) v472

• confs/asia.hg.conf
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    46c16b1be0c47b50bb64af6f67b11b0431f7ba5c Sun Sep 22 01:11:22 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/euro.hg.conf
  • lines changed 3, context: html, text, full: html, text
    46c16b1be0c47b50bb64af6f67b11b0431f7ba5c Sun Sep 22 01:11:22 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/rr.hg.conf
  • lines changed 3, context: html, text, full: html, text
    46c16b1be0c47b50bb64af6f67b11b0431f7ba5c Sun Sep 22 01:11:22 2024 -0700
    Installing updated hg.conf files from UCSC servers
• docs/GBpandocHTMLrules.lua
  • lines changed 26, context: html, text, full: html, text
    9c4464a8b6f85855c9e758f04f0b811403efb64f Thu Sep 19 16:00:34 2024 -0700
    Adding a new --filter to the pandoc run linking to a file with special cases we want handled by the conversion. This first case takes an image code block and converts it to an html image tag with source and width specified. Refs #30335
• docs/gb101.md
  • lines changed 6, context: html, text, full: html, text
    9c4464a8b6f85855c9e758f04f0b811403efb64f Thu Sep 19 16:00:34 2024 -0700
    Adding a new --filter to the pandoc run linking to a file with special cases we want handled by the conversion. This first case takes an image code block and converts it to an html image tag with source and width specified. Refs #30335
• docs/makefile
  • lines changed 3, context: html, text, full: html, text
    9c4464a8b6f85855c9e758f04f0b811403efb64f Thu Sep 19 16:00:34 2024 -0700
    Adding a new --filter to the pandoc run linking to a file with special cases we want handled by the conversion. This first case takes an image code block and converts it to an html image tag with source and width specified. Refs #30335
• src/browserbox/root/updateBrowser.sh
  • lines changed 10, context: html, text, full: html, text
    acfa1cf389ae85ab23161a84bc0dacad0945d1a6 Tue Sep 17 13:12:18 2024 -0700
    fixing mysql tables before trying to access them, refs #34469
• src/browserbox/usr/local/apache/cgi-bin/hg.conf
  • lines changed 11, context: html, text, full: html, text
    ab830002add0a1217f2aff4b6f8f1c2fb92fa0da Tue Sep 17 16:23:28 2024 -0700
    Updating the GBiB hg.conf with a few settings. This hg.conf had not been updated in about 3 years. Refs #28645
• src/hg/cartReset/cartReset.c
  • lines changed 1, context: html, text, full: html, text
    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
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    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/cirm/cdw/lib/cdwPageFooter.h
  • lines changed 2, context: html, text, full: html, text
    ce8f3ea0b9a92fdeae5257a2035b11dedc78b5b0 Thu Sep 19 08:47:11 2024 -0700
    Adding a SSPsyGene Timeline graphic fo SSPsyGene portal, and links in footer, and CGI page footer; Commit Approved by Max in email 9/19/24
• src/hg/cirm/gateway/htdocs/inc/footer.html
  • lines changed 2, context: html, text, full: html, text
    ce8f3ea0b9a92fdeae5257a2035b11dedc78b5b0 Thu Sep 19 08:47:11 2024 -0700
    Adding a SSPsyGene Timeline graphic fo SSPsyGene portal, and links in footer, and CGI page footer; Commit Approved by Max in email 9/19/24
• src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
  • lines changed 233, context: html, text, full: html, text
    ce8f3ea0b9a92fdeae5257a2035b11dedc78b5b0 Thu Sep 19 08:47:11 2024 -0700
    Adding a SSPsyGene Timeline graphic fo SSPsyGene portal, and links in footer, and CGI page footer; Commit Approved by Max in email 9/19/24
• src/hg/hgMenubar/hgMenubar.c
  • lines changed 2, context: html, text, full: html, text
    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
  • lines changed 2, context: html, text, full: html, text
    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/hgMirror/hgMirror
  • lines changed 136, context: html, text, full: html, text
    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
  • lines changed 136, context: html, text, full: html, text
    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/hgPhyloPlace/runUsher.c
  • lines changed 3, context: html, text, full: html, text
    20a301d281de4623f8f804b0d7bae482128c9700 Tue Sep 17 12:21:32 2024 -0700
    Just figure out the number of comma-separated elements the right way. I was trying to be clever but when there was a mutation at a single-digit position (length 3), that failed.
• src/hg/hgTables/galaxy.c
  • lines changed 3, context: html, text, full: html, text
    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
  • lines changed 3, context: html, text, full: html, text
    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 1, context: html, text, full: html, text
    f5fb65bf90e2a0ce909500bfa02dde60226212b0 Wed Sep 18 18:51:25 2024 -0700
    Fix colorPicker not being available on standalone trackDb pages, and make it display the currently selected color to start instead of the default value, refs #34476
• src/hg/hgTracks/config.c
  • lines changed 9, context: html, text, full: html, text
    6afa9dd4343c3b66ff09f39735170ec8be5f282e Wed Sep 18 17:33:15 2024 -0700
    add ability to set a timeout on remote loads
• src/hg/hgTracks/hgTracks.c
  • lines changed 48, context: html, text, full: html, text
    6afa9dd4343c3b66ff09f39735170ec8be5f282e Wed Sep 18 17:33:15 2024 -0700
    add ability to set a timeout on remote loads
  • lines changed 2, context: html, text, full: html, text
    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
  • lines changed 125, context: html, text, full: html, text
    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
  • lines changed 124, context: html, text, full: html, text
    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
  • lines changed 1, context: html, text, full: html, text
    8d70c954c12f93446dbb76b06a99297a8ce06647 Mon Sep 23 04:49:55 2024 -0700
    fixing amino acid display is always on, even for very large regions, if the user has set the option to always show them, refs #34481
• src/hg/hgTracks/hgTracks.h
  • lines changed 3, context: html, text, full: html, text
    6afa9dd4343c3b66ff09f39735170ec8be5f282e Wed Sep 18 17:33:15 2024 -0700
    add ability to set a timeout on remote loads
• src/hg/hgTracks/simpleTracks.c
  • lines changed 337, context: html, text, full: html, text
    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
  • lines changed 337, context: html, text, full: html, text
    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/hgc/hgc.c
  • lines changed 8, context: html, text, full: html, text
    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
  • lines changed 8, context: html, text, full: html, text
    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/htdocs/cite.html
  • lines changed 2, context: html, text, full: html, text
    ef4c8110691d5214eff9858bc936929370dd47bf Wed Sep 18 08:56:04 2024 -0700
    updating to point to 2024 NAR article, refs #34463
• src/hg/htdocs/goldenPath/credits.html
  • lines changed 6, context: html, text, full: html, text
    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
  • lines changed 6, context: html, text, full: html, text
    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/htdocs/goldenPath/help/chain.html
  • lines changed 40, context: html, text, full: html, text
    ab2f57f4ebbb1b98aaf1ac0033eb2fa1bc36ad87 Mon Sep 23 09:06:12 2024 -0700
    Adding information to the chain.html about the minus strand in chain files, refs #24858
• src/hg/htdocs/goldenPath/help/decorator.html
  • lines changed 20, context: html, text, full: html, text
    0451f7bf051da20d1ba53719854ad47f5396f4ed Sun Sep 22 17:07:33 2024 -0700
    Adding a Debugging the decorator bigBed section to the decorator.html and fixing some html issues, refs #32818
  • lines changed 14, context: html, text, full: html, text
    61618ede4afcbb2320c424d9198f6d259e0d943b Sun Sep 22 17:29:28 2024 -0700
    Updating the Debugging the decorator bigBed section of the decorator.html, refs #32818
• src/hg/htdocs/inc/gbPageStartHardcoded.html
  • lines changed 1, context: html, text, full: html, text
    68bb818d4487c5ed0f0e7faa720f2b4890a657d9 Tue Sep 17 13:17:14 2024 -0700
    skipping local storage on cart reset, to make the static pages menu identical to the hgTracks menu, no redmine
• src/hg/htdocs/index.html
  • lines changed 1, context: html, text, full: html, text
    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
  • lines changed 1, context: html, text, full: html, text
    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/htdocs/indexNews.html
  • lines changed 1, context: html, text, full: html, text
    c1353c6be6756c5ca244d8f6ddcd8909deba22e8 Wed Sep 18 14:19:57 2024 -0700
    This is a test of the RM git hook, this change will be removed. Refs #34419
  • lines changed 1, context: html, text, full: html, text
    753da894db01f035662858da6f5534405017cc7e Wed Sep 18 16:27:58 2024 -0700
    Removing the test commit I made to see if git hooks are working.
• src/hg/htdocs/style/HGStyle.css
  • lines changed 2, context: html, text, full: html, text
    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/htdocs/style/images/ui-icons_444444_256x240.png
  • lines changed 0, context: html, text, full: html, text
    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/htdocs/style/images/ui-icons_555555_256x240.png
  • lines changed 0, context: html, text, full: html, text
    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/htdocs/style/images/ui-icons_777620_256x240.png
  • lines changed 0, context: html, text, full: html, text
    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/htdocs/style/images/ui-icons_777777_256x240.png
  • lines changed 0, context: html, text, full: html, text
    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/htdocs/style/images/ui-icons_cc0000_256x240.png
  • lines changed 0, context: html, text, full: html, text
    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/htdocs/style/images/ui-icons_ffffff_256x240.png
  • lines changed 0, context: html, text, full: html, text
    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/htdocs/style/jquery-ui.css
  • lines changed 50, context: html, text, full: html, text
    1627e2f027d97279f2f800f128c34b8ec987f719 Mon Aug 19 11:34:34 2024 -0700
    Get rid of commented out portion of jquery-ui.css for easier diffs when upgrading
  • lines changed 1362, context: html, text, full: html, text
    09c2b2e788c8cae028446ae7a948df6b1027eb56 Wed Aug 21 11:29:48 2024 -0700
    Trying to simply update jquery-ui.js and jquery-ui.css to version 1.14.
  • lines changed 139, context: html, text, full: html, text
    ff7bcaa5d7a4d6648d943a464d0b603f251daf0c Wed Aug 21 14:50:27 2024 -0700
    Fix some broken track ui pages from jquery upgrade, and try to clean up jquery-ui styles
  • lines changed 26, context: html, text, full: html, text
    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/inc/interactUi.h
  • lines changed 1, context: html, text, full: html, text
    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
  • lines changed 1, context: html, text, full: html, text
    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/inc/jksql.h
  • lines changed 3, context: html, text, full: html, text
    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
  • lines changed 3, context: html, text, full: html, text
    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/js/autocomplete.js
  • lines changed 2, context: html, text, full: html, text
    09c2b2e788c8cae028446ae7a948df6b1027eb56 Wed Aug 21 11:29:48 2024 -0700
    Trying to simply update jquery-ui.js and jquery-ui.css to version 1.14.
  • lines changed 62, context: html, text, full: html, text
    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/js/autocompleteCat.js
  • lines changed 1, context: html, text, full: html, text
    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/js/hgGateway.js
  • lines changed 12, context: html, text, full: html, text
    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/js/hgTracks.js
  • lines changed 24, context: html, text, full: html, text
    ff7bcaa5d7a4d6648d943a464d0b603f251daf0c Wed Aug 21 14:50:27 2024 -0700
    Fix some broken track ui pages from jquery upgrade, and try to clean up jquery-ui styles
  • lines changed 58, context: html, text, full: html, text
    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
  • lines changed 98, context: html, text, full: html, text
    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
  • lines changed 98, context: html, text, full: html, text
    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/js/hui.js
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    f5fb65bf90e2a0ce909500bfa02dde60226212b0 Wed Sep 18 18:51:25 2024 -0700
    Fix colorPicker not being available on standalone trackDb pages, and make it display the currently selected color to start instead of the default value, refs #34476
  • lines changed 17, context: html, text, full: html, text
    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/js/jquery-migrate-1.4.1.js
  • lines changed 752, context: html, text, full: html, text
    982640144e463466b4bb6f2f160c87f3118775ac Tue Aug 20 09:50:22 2024 -0700
    Upgrade to jquery version to 1.12.4, add jquery migrate for 1.5 to 1.12 conversion
  • lines changed 752, context: html, text, full: html, text
    6605c847dffc7cdbdf61e3e112aaabbac01575c5 Thu Sep 19 13:38:41 2024 -0700
    Remove jquery-migrate helper scripts and other files in preparation for merge to master
• src/hg/js/jquery-migrate-3.5.2.js
  • lines changed 1031, context: html, text, full: html, text
    e5fc94f6091435242cfa794857c78da5140202f3 Thu Aug 29 15:43:29 2024 -0700
    Add jquery-migrate for new jquery version
  • lines changed 1031, context: html, text, full: html, text
    6605c847dffc7cdbdf61e3e112aaabbac01575c5 Thu Sep 19 13:38:41 2024 -0700
    Remove jquery-migrate helper scripts and other files in preparation for merge to master
• src/hg/js/jquery-ui.js
  • lines changed 18744, context: html, text, full: html, text
    09c2b2e788c8cae028446ae7a948df6b1027eb56 Wed Aug 21 11:29:48 2024 -0700
    Trying to simply update jquery-ui.js and jquery-ui.css to version 1.14.
• src/hg/js/jquery-ui.js.1.8.10.backup
  • lines changed 434, context: html, text, full: html, text
    982640144e463466b4bb6f2f160c87f3118775ac Tue Aug 20 09:50:22 2024 -0700
    Upgrade to jquery version to 1.12.4, add jquery migrate for 1.5 to 1.12 conversion
  • lines changed 434, context: html, text, full: html, text
    6605c847dffc7cdbdf61e3e112aaabbac01575c5 Thu Sep 19 13:38:41 2024 -0700
    Remove jquery-migrate helper scripts and other files in preparation for merge to master
• src/hg/js/jquery.contextmenu.js
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    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/js/jquery.history.js
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    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/js/jquery.imgareaselect.js
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    ff7bcaa5d7a4d6648d943a464d0b603f251daf0c Wed Aug 21 14:50:27 2024 -0700
    Fix some broken track ui pages from jquery upgrade, and try to clean up jquery-ui styles
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    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/js/jquery.js
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    982640144e463466b4bb6f2f160c87f3118775ac Tue Aug 20 09:50:22 2024 -0700
    Upgrade to jquery version to 1.12.4, add jquery migrate for 1.5 to 1.12 conversion
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    572d31a9744911f668856245874abd6cd15bda6b Thu Aug 29 15:42:17 2024 -0700
    Update to jquery 3.7.1
• src/hg/js/jquery.plugins.js
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    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/js/jquery.tablednd.js
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    ff7bcaa5d7a4d6648d943a464d0b603f251daf0c Wed Aug 21 14:50:27 2024 -0700
    Fix some broken track ui pages from jquery upgrade, and try to clean up jquery-ui styles
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    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/js/jquery.watermark.js
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    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/js/jquery.watermarkinput.js
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    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/js/makefile
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    982640144e463466b4bb6f2f160c87f3118775ac Tue Aug 20 09:50:22 2024 -0700
    Upgrade to jquery version to 1.12.4, add jquery migrate for 1.5 to 1.12 conversion
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    e5fc94f6091435242cfa794857c78da5140202f3 Thu Aug 29 15:43:29 2024 -0700
    Add jquery-migrate for new jquery version
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    6605c847dffc7cdbdf61e3e112aaabbac01575c5 Thu Sep 19 13:38:41 2024 -0700
    Remove jquery-migrate helper scripts and other files in preparation for merge to master
• src/hg/js/subCfg.js
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
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    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/js/tutorials/clinicalTutorial.js
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    48252848c7561d59031f79ada16fcfc02e587c9d Tue Sep 17 14:13:43 2024 -0700
    Fixing some issues pointed out by Chris from code review, refs #34461
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    54863cac4c77cc7b4c8399af4313b158927ee9fc Tue Sep 17 14:45:29 2024 -0700
    Making the titles sentence case. Updating the highlighting tooltip with other shortcuts. refs #33732
• src/hg/js/utils.js
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    09c2b2e788c8cae028446ae7a948df6b1027eb56 Wed Aug 21 11:29:48 2024 -0700
    Trying to simply update jquery-ui.js and jquery-ui.css to version 1.14.
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    ff7bcaa5d7a4d6648d943a464d0b603f251daf0c Wed Aug 21 14:50:27 2024 -0700
    Fix some broken track ui pages from jquery upgrade, and try to clean up jquery-ui styles
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    25f258c7fdfbdf417a917fcd00fff78d698def9b Fri Aug 30 12:01:24 2024 -0700
    Big run through of changes to accomodate jquery 3.7.1 upgrade. Most of the changes are replacing the event methods with a change to .on(event, function(..)). A couple more changes are removing calls to jquery.type(). Also fixes various plugins and styles
• src/hg/lib/cart.c
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    982640144e463466b4bb6f2f160c87f3118775ac Tue Aug 20 09:50:22 2024 -0700
    Upgrade to jquery version to 1.12.4, add jquery migrate for 1.5 to 1.12 conversion
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    e5fc94f6091435242cfa794857c78da5140202f3 Thu Aug 29 15:43:29 2024 -0700
    Add jquery-migrate for new jquery version
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    6605c847dffc7cdbdf61e3e112aaabbac01575c5 Thu Sep 19 13:38:41 2024 -0700
    Remove jquery-migrate helper scripts and other files in preparation for merge to master
• src/hg/lib/decoratorUi.c
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    16aae5365b89dd176868f9d8689ff1457b741f58 Mon Sep 23 00:48:52 2024 -0700
    Restoring needed cart variable name for tracking decorator draw modes, refs #34482
• src/hg/lib/encode/encodePeak.c
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
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    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/lib/hgFind.c
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
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    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/lib/web.c
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    982640144e463466b4bb6f2f160c87f3118775ac Tue Aug 20 09:50:22 2024 -0700
    Upgrade to jquery version to 1.12.4, add jquery migrate for 1.5 to 1.12 conversion
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    e5fc94f6091435242cfa794857c78da5140202f3 Thu Aug 29 15:43:29 2024 -0700
    Add jquery-migrate for new jquery version
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    6605c847dffc7cdbdf61e3e112aaabbac01575c5 Thu Sep 19 13:38:41 2024 -0700
    Remove jquery-migrate helper scripts and other files in preparation for merge to master
• src/hg/liftOver/liftOver.c
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
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    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/makeDb/cadd/caddToWig.py
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
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    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/makeDb/doc/asmHubs/asmHubs.mk
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    730f1cb766d7ab79175fc0c27f88e8139cdb9a60 Fri Sep 20 12:05:47 2024 -0700
    customized text for index page on BRC project (these custom headers should instead be header.html in the project source directories) and now sending out assemblyList.json file refs #34337
• src/hg/makeDb/doc/asmHubs/hubIndex.pl
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    3a91c81cd956cef5e7400591771598dfc88b7833 Fri Sep 20 12:09:16 2024 -0700
    now with BRC project refs #34337
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    b80f130bdfeb72f4600c82a8f8c41730eaaf1c9e Fri Sep 20 12:14:10 2024 -0700
    allow function on hgdownload2 also refs #34337
• src/hg/makeDb/doc/asmHubs/lastzRuns.txt
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    b8a0cff9eb03810570fe87d6dfc36e8ab3b2ad45 Mon Sep 16 11:46:47 2024 -0700
    Making liftOver chains for a MLQ, refs #34395
• src/hg/makeDb/doc/asmHubs/master.run.list
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    d901c4001373c5e8250a933a64129fc899538529 Tue Sep 17 08:42:49 2024 -0700
    adding 92 for BRC update refs #34337
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    b1c4322ae696e98901ec40b96ff7682c4cdf5414 Sat Sep 21 15:38:39 2024 -0700
    BRC update adding 85 refs #34337
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    b5a6af80774e1d90b4189b4cad6a46eed169aaf3 Mon Sep 23 10:09:45 2024 -0700
    BRC update refs #34337
• src/hg/makeDb/doc/asmHubs/mkAsmStats.pl
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    730f1cb766d7ab79175fc0c27f88e8139cdb9a60 Fri Sep 20 12:05:47 2024 -0700
    customized text for index page on BRC project (these custom headers should instead be header.html in the project source directories) and now sending out assemblyList.json file refs #34337
• src/hg/makeDb/doc/asmHubs/mkHubIndex.pl
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    730f1cb766d7ab79175fc0c27f88e8139cdb9a60 Fri Sep 20 12:05:47 2024 -0700
    customized text for index page on BRC project (these custom headers should instead be header.html in the project source directories) and now sending out assemblyList.json file refs #34337
• src/hg/makeDb/doc/asmHubs/trackData.pl
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    730f1cb766d7ab79175fc0c27f88e8139cdb9a60 Fri Sep 20 12:05:47 2024 -0700
    customized text for index page on BRC project (these custom headers should instead be header.html in the project source directories) and now sending out assemblyList.json file refs #34337
• src/hg/makeDb/doc/asmHubs/tsvToJson.py
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    5c3fb7c203029aae27a69a7104b690b30da7f558 Mon Sep 23 13:05:57 2024 -0700
    fixup to allow UCSC database names and reading dbGcaGcf.tsf to get GCA GCF accessions on those UCSC names refs #34337
• src/hg/makeDb/doc/brcAsmHub/brc.orderList.tsv
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    869ed52c9ded4eaa7f4b0c3532833d35eda9cd81 Mon Sep 16 15:57:41 2024 -0700
    adding another 90 mostly protozoa and parasitic alveolates. refs #34337
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    118e84d39b5450677f01c78a63a248839ed53487 Thu Sep 19 13:05:48 2024 -0700
    BRC update adding 49 refs #34337
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    6852e815f318d1fdcde50022a5b6eafb630cde97 Mon Sep 23 11:06:03 2024 -0700
    update adding 27 assemblies refs #34337
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    f78731cb5cf3c346e08194bfadc4765122ca1031 Mon Sep 23 13:22:37 2024 -0700
    using mm39 and hg38 for mouse and human standard references refs #34337
• src/hg/makeDb/doc/brcAsmHub/dbGcaGcf.tsv
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    f78731cb5cf3c346e08194bfadc4765122ca1031 Mon Sep 23 13:22:37 2024 -0700
    using mm39 and hg38 for mouse and human standard references refs #34337
• src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv
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    27a34b2d1472b7a8dc28631fa09423dc875b1153 Thu Sep 19 12:44:12 2024 -0700
    BRC update refs #34337
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    b5a6af80774e1d90b4189b4cad6a46eed169aaf3 Mon Sep 23 10:09:45 2024 -0700
    BRC update refs #34337
• src/hg/makeDb/doc/hg38/gnomad.txt
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    edcdcb9dd80eba31d99e159e27e6db9fe360cece Sat Sep 21 17:05:59 2024 -0700
    Adding the gnomAD v4.1 CNV track, refs 34253
• src/hg/makeDb/doc/hg38/nuMtSeq.txt
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    0d12a103cb2699b8dfe738b5bcbed868170829c5 Fri Sep 20 15:16:47 2024 -0700
    Staging the NuMTs track for hg38, refs #34303
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
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    27a34b2d1472b7a8dc28631fa09423dc875b1153 Thu Sep 19 12:44:12 2024 -0700
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    b5a6af80774e1d90b4189b4cad6a46eed169aaf3 Mon Sep 23 10:09:45 2024 -0700
    BRC update refs #34337
• src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt
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    27a34b2d1472b7a8dc28631fa09423dc875b1153 Thu Sep 19 12:44:12 2024 -0700
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    6f8907ff0e4a54c394521dbb4219d40fd98822d2 Thu Sep 19 15:05:38 2024 -0700
    eliminate items that should not be here refs #34337
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    503c713ebcfd7ca50d0f9427c0b8b91642a231da Mon Sep 23 10:12:09 2024 -0700
    BRC update refs #34337
• src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
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    27a34b2d1472b7a8dc28631fa09423dc875b1153 Thu Sep 19 12:44:12 2024 -0700
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    503c713ebcfd7ca50d0f9427c0b8b91642a231da Mon Sep 23 10:12:09 2024 -0700
    BRC update refs #34337
• src/hg/makeDb/doc/zoonomiaAsmHub/dbGcaGcf.tsv
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    5c3fb7c203029aae27a69a7104b690b30da7f558 Mon Sep 23 13:05:57 2024 -0700
    fixup to allow UCSC database names and reading dbGcaGcf.tsf to get GCA GCF accessions on those UCSC names refs #34337
• src/hg/makeDb/revel/revelToWig-hg38.py
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
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    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/makeDb/scripts/prsEmerge/prs2bigBed.sh
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
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    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/makeDb/trackDb/buildTrix
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
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    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/makeDb/trackDb/human/clinvar.ra
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• src/hg/makeDb/trackDb/human/hg38/gnomad.alpha.ra
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    c4fccd7cbefe2fb6f39a27cb83402dcda60d35d0 Wed Sep 18 16:22:25 2024 -0700
    More updates for the staging of the Transcript LoF v4.1 and Missense v4.1 tracks on hgwbeta, refs #34252
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    70fb831ab2d526e63c9a94750cab634654f153fd Thu Sep 19 16:43:08 2024 -0700
    Making edits to the gnomAD v4.1 SV track from Lou’s feedback, refs #33823
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    edcdcb9dd80eba31d99e159e27e6db9fe360cece Sat Sep 21 17:05:59 2024 -0700
    Adding the gnomAD v4.1 CNV track, refs 34253
• src/hg/makeDb/trackDb/human/hg38/gnomad.constraint.alpha.ra
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    c4fccd7cbefe2fb6f39a27cb83402dcda60d35d0 Wed Sep 18 16:22:25 2024 -0700
    More updates for the staging of the Transcript LoF v4.1 and Missense v4.1 tracks on hgwbeta, refs #34252
• src/hg/makeDb/trackDb/human/hg38/gnomad.constraint.public.ra
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    c4fccd7cbefe2fb6f39a27cb83402dcda60d35d0 Wed Sep 18 16:22:25 2024 -0700
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• src/hg/makeDb/trackDb/human/hg38/gnomad.ra
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    c4fccd7cbefe2fb6f39a27cb83402dcda60d35d0 Wed Sep 18 16:22:25 2024 -0700
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• src/hg/makeDb/trackDb/human/hg38/gnomadCNV.html
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    edcdcb9dd80eba31d99e159e27e6db9fe360cece Sat Sep 21 17:05:59 2024 -0700
    Adding the gnomAD v4.1 CNV track, refs 34253
• src/hg/makeDb/trackDb/human/hg38/gnomadPLI.alpha.html
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    c4fccd7cbefe2fb6f39a27cb83402dcda60d35d0 Wed Sep 18 16:22:25 2024 -0700
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• src/hg/makeDb/trackDb/human/hg38/gnomadPLI.html
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    c4fccd7cbefe2fb6f39a27cb83402dcda60d35d0 Wed Sep 18 16:22:25 2024 -0700
    More updates for the staging of the Transcript LoF v4.1 and Missense v4.1 tracks on hgwbeta, refs #34252
• src/hg/makeDb/trackDb/human/hg38/gnomadSv.html
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    70fb831ab2d526e63c9a94750cab634654f153fd Thu Sep 19 16:43:08 2024 -0700
    Making edits to the gnomAD v4.1 SV track from Lou’s feedback, refs #33823
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    ed7abd44f51da052467fbc1c20082f6c34738bec Fri Sep 20 17:53:33 2024 -0700
    Small grammar nit, refs #33823
• src/hg/makeDb/trackDb/human/hg38/nuMtSeq.html
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    0d12a103cb2699b8dfe738b5bcbed868170829c5 Fri Sep 20 15:16:47 2024 -0700
    Staging the NuMTs track for hg38, refs #34303
• src/hg/makeDb/trackDb/human/hg38/nuMtSeq.ra
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    0d12a103cb2699b8dfe738b5bcbed868170829c5 Fri Sep 20 15:16:47 2024 -0700
    Staging the NuMTs track for hg38, refs #34303
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    c4fccd7cbefe2fb6f39a27cb83402dcda60d35d0 Wed Sep 18 16:22:25 2024 -0700
    More updates for the staging of the Transcript LoF v4.1 and Missense v4.1 tracks on hgwbeta, refs #34252
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    0d12a103cb2699b8dfe738b5bcbed868170829c5 Fri Sep 20 15:16:47 2024 -0700
    Staging the NuMTs track for hg38, refs #34303
• src/hg/makeDb/trackDb/virus/mpxvRivers/mask.ra
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
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    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/hg/utils/automation/asmHubTrackDb.sh
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    ffce6032dc038a0b9e45af61b3fa3a3032568dc2 Mon Sep 16 15:39:28 2024 -0700
    do not need altColor on track ncbiRefSeq causes red wings on chevrons in NCBI RefSeq "all" track no redmine
• src/hg/utils/automation/doBlastzChainNet.pl
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    4f6ea1808067647f43b31a4ed3e55723129de2f9 Fri Sep 20 19:05:36 2024 -0700
    genome-source has now become githubusercontent refs #34449
• src/hg/utils/automation/doNcbiRefSeq.pl
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    95ee44a5d737970678a6d856d1228b908941de2c Fri Sep 20 19:00:51 2024 -0700
    genome-source has now become githubusercontent refs #34449
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    6a74ea5eb50dd8b835d28650e1b235bb38245a02 Sun Sep 22 12:58:11 2024 -0700
    correct quote for githubusercontent reference refs #34449
• src/hg/utils/hubCheck/hubCheck.c
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    685233c5df19c4adedc6b82cd16418e611246a3e Wed Sep 18 14:58:29 2024 -0700
    hubCheck checks for valid type lines in subtracks, not just that the bigBed type setting is correct, refs #34475
• src/hg/utils/hubCheck/tests/expected/badType.output.txt
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    685233c5df19c4adedc6b82cd16418e611246a3e Wed Sep 18 14:58:29 2024 -0700
    hubCheck checks for valid type lines in subtracks, not just that the bigBed type setting is correct, refs #34475
• src/hg/utils/hubCheck/tests/input/badType.txt
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    685233c5df19c4adedc6b82cd16418e611246a3e Wed Sep 18 14:58:29 2024 -0700
    hubCheck checks for valid type lines in subtracks, not just that the bigBed type setting is correct, refs #34475
• src/hg/utils/otto/clinvar/clinvar.as
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    917176d5ba361d19ec6c34d37c770bfa6550337d Wed Sep 18 13:39:23 2024 -0700
    adding clinvar.as forgotten in the recent clinvar changes
• src/inc/psGfx.h
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
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    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/inc/udc.h
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    6afa9dd4343c3b66ff09f39735170ec8be5f282e Wed Sep 18 17:33:15 2024 -0700
    add ability to set a timeout on remote loads
• src/lib/cheapcgi.c
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
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    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/lib/psGfx.c
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
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    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/lib/udc.c
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    6afa9dd4343c3b66ff09f39735170ec8be5f282e Wed Sep 18 17:33:15 2024 -0700
    add ability to set a timeout on remote loads
• src/product/installer/browserSetup.sh
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    94164e1121bb557b2791a0ae29a58bb14944ad4e Tue Sep 17 16:19:17 2024 -0700
    Making sure to repair tables before hiding tracks in GBiC update/install steps, refs #34469
• src/utils/bigWigToWig/bigWigToWig.c
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
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    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/utils/hubMake/hubMake
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
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    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/utils/hubMake/makefile
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
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    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/utils/hubtools/hubtools
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    f6c44a86607233aaf1755321277340fade45f2b2 Wed Sep 18 07:55:41 2024 -0700
    adding a .ra to .tsv converter to hubtools, motivated by MarcP
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    fea4e31015340a94c10cec9261bfaaefc733b52f Thu Sep 19 09:34:17 2024 -0700
    adding features to hubtools: yaml support, reorder composites by meta, order tracks by meta, allow both baseNames or actual trackNames in the meta for both this and all other meta data lookups
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
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    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/utils/hubtools/makefile
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    05e67c59a20a5d00b810a981aef3b00c5bef82e1 Fri Sep 20 06:03:18 2024 -0700
    more features to hubtools: search in both parent and subdirs, better docs
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    0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd Fri Sep 20 13:18:01 2024 -0700
    Revert "more features to hubtools: search in both parent and subdirs, better docs" This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.
• src/utils/qa/weeklybld/buildEnv.csh
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    0af1421095432362fda3f490603a57b09eeeca4b Mon Sep 23 14:53:33 2024 -0700
    v472 preview1, refs #34382
• src/utils/qa/weeklybld/sendLogEmail.pl
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    7a0bb6ac0281a3d8193816821e9e7b6c27d93763 Tue Sep 17 12:29:48 2024 -0700
    correctly recognize authors case insensitive no redmine;

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