All File Changes

v473_preview to v473_preview2 (2024-10-14 to 2024-10-21) v473

• confs/asia.hg.conf
  • lines changed 6, context: html, text, full: html, text
    0f235a902415287fde42129404f2f9583789bada Sun Oct 20 01:11:22 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/euro.hg.conf
  • lines changed 6, context: html, text, full: html, text
    0f235a902415287fde42129404f2f9583789bada Sun Oct 20 01:11:22 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/rr.hg.conf
  • lines changed 6, context: html, text, full: html, text
    0f235a902415287fde42129404f2f9583789bada Sun Oct 20 01:11:22 2024 -0700
    Installing updated hg.conf files from UCSC servers
• src/gfServer/gfServer.c
  • lines changed 2, context: html, text, full: html, text
    4d4719a1f453b3c1efb7c7ec5abfd26d4005553c Tue Oct 15 17:33:55 2024 -0700
    fixed incorrect assert added as sanity check during bigBlat work (#34406)
• src/hg/cgilib/hgSeq.c
  • lines changed 13, context: html, text, full: html, text
    288c7b7d7573211134a3d2fdced0911324b9de70 Fri Oct 18 04:13:03 2024 -0700
    adding primer3 exon amp mode support to primer3 links, refs #34657
• src/hg/cirm/cdw/lib/cdwPageFooter.h
  • lines changed 1, context: html, text, full: html, text
    83f7d65f68e7d721d06ab702065cfc4fda852979 Tue Oct 15 14:40:21 2024 -0700
    Updating link to /cirmIndex to sspsygene.html
• src/hg/cirm/cdw/lib/cdwPageHeader.h
  • lines changed 2, context: html, text, full: html, text
    2f44d2798e7216cde5210ef2280a470e291fbff4 Tue Oct 15 12:09:06 2024 -0700
    Max approved 10/15 commit to cirm to sspsygene link changes, no code review req.
• src/hg/cirm/gateway/htdocs/images/schub.ico
  • lines changed 0, context: html, text, full: html, text
    2f44d2798e7216cde5210ef2280a470e291fbff4 Tue Oct 15 12:09:06 2024 -0700
    Max approved 10/15 commit to cirm to sspsygene link changes, no code review req.
• src/hg/cirm/gateway/htdocs/inc/footer.html
  • lines changed 3, context: html, text, full: html, text
    2f44d2798e7216cde5210ef2280a470e291fbff4 Tue Oct 15 12:09:06 2024 -0700
    Max approved 10/15 commit to cirm to sspsygene link changes, no code review req.
• src/hg/cirm/gateway/htdocs/inc/header.html
  • lines changed 2, context: html, text, full: html, text
    2f44d2798e7216cde5210ef2280a470e291fbff4 Tue Oct 15 12:09:06 2024 -0700
    Max approved 10/15 commit to cirm to sspsygene link changes, no code review req.
• src/hg/cirm/gateway/htdocs/index.html
  • lines changed 9, context: html, text, full: html, text
    2f44d2798e7216cde5210ef2280a470e291fbff4 Tue Oct 15 12:09:06 2024 -0700
    Max approved 10/15 commit to cirm to sspsygene link changes, no code review req.
  • lines changed 9, context: html, text, full: html, text
    1c0151663fed851b485ddd65208019a920a1ad9e Tue Oct 15 12:14:28 2024 -0700
    Backing this /cirm/htdocs change, apache rule on new sspsygene machine likely better choice
• src/hg/hgBlat/hgBlat.c
  • lines changed 38, context: html, text, full: html, text
    b35e7a26a988bb2235b9719d5105a13888db9fe6 Fri Oct 18 00:02:49 2024 -0700
    Originally only Blat's guess used filtering to remove unacceptahble characters, whereas the other types would just substitute X for amino or n for dna. Now we just filter like BLATs guess for all the input types, and they are consistent and correct and default behavior type will work as it always has. fixes #29760
• src/hg/hgGene/hgGeneData/Mouse/links.ra
  • lines changed 6, context: html, text, full: html, text
    b2ac469122dafea7ab5d58328a7dc03c4f054ec6 Thu Oct 17 18:07:09 2024 -0700
    Removing the stanfordSource link since SOURCE was retired, refs #34218
• src/hg/hgTables/bigBed.c
  • lines changed 1, context: html, text, full: html, text
    fa815602bbac262a6e07ac577e40558abcf93144 Tue Oct 15 04:53:53 2024 -0700
    suppress download link for protected tracks, refs #34629
• src/hg/hgTables/bigWig.c
  • lines changed 1, context: html, text, full: html, text
    fa815602bbac262a6e07ac577e40558abcf93144 Tue Oct 15 04:53:53 2024 -0700
    suppress download link for protected tracks, refs #34629
• src/hg/hgTables/hgTables.c
  • lines changed 9, context: html, text, full: html, text
    fa815602bbac262a6e07ac577e40558abcf93144 Tue Oct 15 04:53:53 2024 -0700
    suppress download link for protected tracks, refs #34629
• src/hg/hgTables/hgTables.h
  • lines changed 4, context: html, text, full: html, text
    fa815602bbac262a6e07ac577e40558abcf93144 Tue Oct 15 04:53:53 2024 -0700
    suppress download link for protected tracks, refs #34629
• src/hg/hgTables/mainPage.c
  • lines changed 20, context: html, text, full: html, text
    fa815602bbac262a6e07ac577e40558abcf93144 Tue Oct 15 04:53:53 2024 -0700
    suppress download link for protected tracks, refs #34629
• src/hg/hgTables/schema.c
  • lines changed 1, context: html, text, full: html, text
    fa815602bbac262a6e07ac577e40558abcf93144 Tue Oct 15 04:53:53 2024 -0700
    suppress download link for protected tracks, refs #34629
• src/hg/hgTables/vcf.c
  • lines changed 1, context: html, text, full: html, text
    fa815602bbac262a6e07ac577e40558abcf93144 Tue Oct 15 04:53:53 2024 -0700
    suppress download link for protected tracks, refs #34629
• src/hg/hgTracks/barChartTrack.c
  • lines changed 1, context: html, text, full: html, text
    7ae79a5dd4f8b9f63da0c11c7c2e4949ec411dbb Thu Oct 17 13:23:11 2024 -0700
    comment out unnecessary assert. Fixes #34399 note-26
• src/hg/hgTracks/hgTracks.c
  • lines changed 8, context: html, text, full: html, text
    0026572277199c1d6873b958e0382e381f5cd460 Wed Oct 16 08:52:08 2024 -0700
    fixing a bug where setTimeout was run with seconds instead of milliseconds. Due to how the page loads, that bug had no effect in most circumstances, as the timer was immediately stopped afterwards. For mysterious reaons this bug is only visible when you open a new private browser window and only on first page load, no caches. No redmine yet, email from Lou.
• src/hg/hgTracks/imageV2.c
  • lines changed 17, context: html, text, full: html, text
    c35f61249daf6b5f463754b180c3fe74ef42d39d Tue Oct 15 06:13:50 2024 -0700
    when hiding tracks on right-click, hide parents if possible, rather than their children, refs #27890
• src/hg/hgTracks/simpleTracks.c
  • lines changed 17, context: html, text, full: html, text
    36710988224ab9373893a97a6edc95e033b0d646 Fri Oct 18 08:52:28 2024 -0700
    density mode on vcf tracks was crashing. Refs #34659
• src/hg/hgTracks/vcfTrack.c
  • lines changed 7, context: html, text, full: html, text
    36710988224ab9373893a97a6edc95e033b0d646 Fri Oct 18 08:52:28 2024 -0700
    density mode on vcf tracks was crashing. Refs #34659
• src/hg/hgTracks/wigCommon.h
  • lines changed 5, context: html, text, full: html, text
    36710988224ab9373893a97a6edc95e033b0d646 Fri Oct 18 08:52:28 2024 -0700
    density mode on vcf tracks was crashing. Refs #34659
• src/hg/hgTracks/wigTrack.c
  • lines changed 27, context: html, text, full: html, text
    36710988224ab9373893a97a6edc95e033b0d646 Fri Oct 18 08:52:28 2024 -0700
    density mode on vcf tracks was crashing. Refs #34659
  • lines changed 1, context: html, text, full: html, text
    94456e195ad86e3da7331bc8f014eceaa35a8ecc Fri Oct 18 16:10:47 2024 -0700
    fix wigColorBy to work with linkedFeatures and on hubs
• src/hg/htdocs/FAQ/FAQformat.html
  • lines changed 10, context: html, text, full: html, text
    28aa0d3b6f9ec11895b49f1eb8117d868393fa42 Tue Oct 15 05:21:23 2024 -0700
    Updating the description of the exon frame field, refs #32675
• src/hg/htdocs/goldenPath/help/bigGenePred.html
  • lines changed 11, context: html, text, full: html, text
    28aa0d3b6f9ec11895b49f1eb8117d868393fa42 Tue Oct 15 05:21:23 2024 -0700
    Updating the description of the exon frame field, refs #32675
• src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html
  • lines changed 30, context: html, text, full: html, text
    1fba5920c7fb6cc08c5c87dc3d4d40ba70243a91 Mon Oct 14 16:59:33 2024 -0700
    Start documentation for the highlight.* trackDb variables, fix some javascript errors on the page after the jquery upgrade, refs #33692
• src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.js
  • lines changed 8, context: html, text, full: html, text
    1fba5920c7fb6cc08c5c87dc3d4d40ba70243a91 Mon Oct 14 16:59:33 2024 -0700
    Start documentation for the highlight.* trackDb variables, fix some javascript errors on the page after the jquery upgrade, refs #33692
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html
  • lines changed 29, context: html, text, full: html, text
    1fba5920c7fb6cc08c5c87dc3d4d40ba70243a91 Mon Oct 14 16:59:33 2024 -0700
    Start documentation for the highlight.* trackDb variables, fix some javascript errors on the page after the jquery upgrade, refs #33692
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 67, context: html, text, full: html, text
    1fba5920c7fb6cc08c5c87dc3d4d40ba70243a91 Mon Oct 14 16:59:33 2024 -0700
    Start documentation for the highlight.* trackDb variables, fix some javascript errors on the page after the jquery upgrade, refs #33692
  • lines changed 2, context: html, text, full: html, text
    dab3113cee728931e9e567212dfba4a5a664b47b Wed Oct 16 10:51:05 2024 -0700
    Add an example to the highlight trackDb doc as a test commit, refs #33692
• src/hg/js/hgTracks.js
  • lines changed 48, context: html, text, full: html, text
    c35f61249daf6b5f463754b180c3fe74ef42d39d Tue Oct 15 06:13:50 2024 -0700
    when hiding tracks on right-click, hide parents if possible, rather than their children, refs #27890
  • lines changed 1, context: html, text, full: html, text
    c16b8e7e06bc3e8826cde9ce815c501d307b42ed Wed Oct 16 09:37:45 2024 -0700
    tiny change to time warning message, no redmine
  • lines changed 3, context: html, text, full: html, text
    5727669e8a2fa6a29614240442aa3d85812d2b9c Wed Oct 16 09:40:01 2024 -0700
    again tiny change to time warning message, no redmine
  • lines changed 1, context: html, text, full: html, text
    73842d9355aa7aa407ba4719d45c85505b094842 Thu Oct 17 09:48:16 2024 -0700
    removing debugging code that slipped out, oops
• src/hg/js/hui.js
  • lines changed 7, context: html, text, full: html, text
    0bb3a175e5dc6882aa1aa0e9e7a52e0a08630234 Tue Oct 15 06:32:01 2024 -0700
    fixing small jquery upgrade problem, refs #23169
• src/hg/js/jquery.tablednd.js
  • lines changed 3, context: html, text, full: html, text
    0cb701778e6e819a7cb37a0a67b3d543b0a37ae7 Fri Oct 18 14:20:32 2024 -0700
    Fix track group drag and drop on hgTracks image, another attr() vs prop() issue, refs #34661
• src/hg/js/subCfg.js
  • lines changed 4, context: html, text, full: html, text
    efd31a21fbdbea22203abd6eefc1e1354132c330 Tue Oct 15 07:02:31 2024 -0700
    tiny improvement for composites: when a track is not active, give an indicator that user should activate the subtrack first to configure it. not ideal, but some small step forward, refs #23169
  • lines changed 1, context: html, text, full: html, text
    5c17b0e02a8d094238e75146fdb8371df336faf0 Tue Oct 15 09:01:37 2024 -0700
    didnt see error message during previous commit
  • lines changed 2, context: html, text, full: html, text
    917e844485ed3fd32b4cf90790f604e2643600b1 Fri Oct 18 14:50:19 2024 -0700
    removing alert which wasnt useful in the end, refs #34653
• src/hg/js/tutorials/clinicalTutorial.js
  • lines changed 5, context: html, text, full: html, text
    887dfb2b770990c6feda80844850a49b547cab7c Mon Oct 14 17:01:37 2024 -0700
    Making the clinical tutorial log as completed when you reach the final tooltip instead of relying on the user clicking 'Finish', no Redmine.
• src/hg/js/ui.dropdownchecklist.js
  • lines changed 12, context: html, text, full: html, text
    21c7a2872bd9d08f29623b78f5a63eca040c1ead Thu Oct 17 12:34:21 2024 -0700
    Fix position of dropdownchecklists and make them correctly determine when the options have been selected or not, refs #34647
• src/hg/js/utils.js
  • lines changed 47, context: html, text, full: html, text
    c35f61249daf6b5f463754b180c3fe74ef42d39d Tue Oct 15 06:13:50 2024 -0700
    when hiding tracks on right-click, hide parents if possible, rather than their children, refs #27890
  • lines changed 7, context: html, text, full: html, text
    bc49261bb4a82b6b0068c069e5807e4f7e4420e7 Wed Oct 16 10:00:02 2024 -0700
    bugfix, go over the deleted tracks, not all of trackDb. refs #27890
  • lines changed 4, context: html, text, full: html, text
    ef10e3c79c1b6717ab542a576af46d84cb8ed264 Thu Oct 17 12:33:25 2024 -0700
    Fix checkboxes not being correctly marked as changed when visiting hgTrackUi via dialog, refs #34644
  • lines changed 1, context: html, text, full: html, text
    0cb701778e6e819a7cb37a0a67b3d543b0a37ae7 Fri Oct 18 14:20:32 2024 -0700
    Fix track group drag and drop on hgTracks image, another attr() vs prop() issue, refs #34661
• src/hg/lib/hui.c
  • lines changed 1, context: html, text, full: html, text
    12f2fefa030bbb210b64e64d460f1c95bfde0905 Thu Oct 17 13:52:24 2024 -0700
    need to sanitize the the db for the pop-up display when it is a hub
  • lines changed 3, context: html, text, full: html, text
    fa3431cd36b16586558586e1ce8e3f4f68136926 Thu Oct 17 15:00:58 2024 -0700
    Make the density graph options div have a unique ID so when you have more than one subtrack configure section open on hgTrackUi, the right options are selected, refs #34651
  • lines changed 3, context: html, text, full: html, text
    5437e4cdda97aaa2c5e547fb1e6bd15b086f8464 Mon Oct 21 10:14:15 2024 -0700
    Fix for subtrack color pickers all being placed in the same div, refs #34476
• src/hg/lib/trackHub.c
  • lines changed 1, context: html, text, full: html, text
    94456e195ad86e3da7331bc8f014eceaa35a8ecc Fri Oct 18 16:10:47 2024 -0700
    fix wigColorBy to work with linkedFeatures and on hubs
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 3, context: html, text, full: html, text
    f36dcb0edd6e74a310b47ec28cb495fa156ff6a5 Thu Oct 17 13:54:05 2024 -0700
    adding a couple per user request refs #29545
• src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    f36dcb0edd6e74a310b47ec28cb495fa156ff6a5 Thu Oct 17 13:54:05 2024 -0700
    adding a couple per user request refs #29545
• src/hg/makeDb/doc/hg19.gencode.txt
  • lines changed 3, context: html, text, full: html, text
    349052c6b39b964a7756528532affcfdda8b7281 Thu Oct 17 23:18:19 2024 -0700
    import of GENCODE V47lift38
• src/hg/makeDb/doc/hg38/gencode.txt
  • lines changed 2, context: html, text, full: html, text
    62342829fc47bb67d49f3118226fe663bf2e9af4 Thu Oct 17 23:04:35 2024 -0700
    import of GENCODE V47 final release
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    f36dcb0edd6e74a310b47ec28cb495fa156ff6a5 Thu Oct 17 13:54:05 2024 -0700
    adding a couple per user request refs #29545
• src/hg/makeDb/doc/mm39/gencode.txt
  • lines changed 2, context: html, text, full: html, text
    5f313d07411a062ed7d4995781c7c1f464015ad3 Thu Oct 17 23:35:14 2024 -0700
    import of GENCODE VM36
• src/hg/makeDb/outside/gencode/gencodeLoad.mk
  • lines changed 4, context: html, text, full: html, text
    b90835db13500c17be93628a25ec9f54e93036ad Thu Oct 17 22:59:40 2024 -0700
    import of GENCODE V47 final release
  • lines changed 2, context: html, text, full: html, text
    349052c6b39b964a7756528532affcfdda8b7281 Thu Oct 17 23:18:19 2024 -0700
    import of GENCODE V47lift38
  • lines changed 2, context: html, text, full: html, text
    5f313d07411a062ed7d4995781c7c1f464015ad3 Thu Oct 17 23:35:14 2024 -0700
    import of GENCODE VM36
• src/hg/makeDb/trackDb/human/clinGen.html
  • lines changed 23, context: html, text, full: html, text
    11bc662f36e84395bdfb111d4bc655ea51d02f8a Wed Oct 16 12:56:47 2024 -0700
    Ordering the references, feedback from CR. Refs #34624
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html
  • lines changed 4, context: html, text, full: html, text
    349052c6b39b964a7756528532affcfdda8b7281 Thu Oct 17 23:18:19 2024 -0700
    import of GENCODE V47lift38
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV47lift37.html
  • lines changed 1, context: html, text, full: html, text
    ea1eb588d4c4e4c46df64e6731e6309645c443db Thu Oct 17 23:38:43 2024 -0700
    forgot to update release dates for GENCODE
• src/hg/makeDb/trackDb/human/hg38/primateChainNet.html
  • lines changed 15, context: html, text, full: html, text
    33384bb68fff5dd48a2aeac3a3bd12aed8e7cf13 Tue Oct 15 05:51:20 2024 -0700
    Fixing the credits here that we used lastz, not blastz. Refs #31613
• src/hg/makeDb/trackDb/human/hg38/problematic.html
  • lines changed 5, context: html, text, full: html, text
    70de651d8254c1f74e512e2e5a02712aff1334fb Mon Oct 14 12:11:10 2024 -0700
    Adding headers for the different tracks in the Problematic Regions track description page and defining GIAB, refs #32715
  • lines changed 6, context: html, text, full: html, text
    a4324373aa5e39e5619bdcacc842d892d00054d5 Tue Oct 15 00:20:33 2024 -0700
    Updating shortLabel, longLabel, bigBed files names, and adding new biorxiv publication, refs #32715
• src/hg/makeDb/trackDb/human/hg38/problematic.ra
  • lines changed 7, context: html, text, full: html, text
    a4324373aa5e39e5619bdcacc842d892d00054d5 Tue Oct 15 00:20:33 2024 -0700
    Updating shortLabel, longLabel, bigBed files names, and adding new biorxiv publication, refs #32715
• src/hg/makeDb/trackDb/human/hg38/singleCellMerged.html
  • lines changed 20, context: html, text, full: html, text
    2c4dde2e415f857b56d445896b0d94583092dc98 Tue Oct 15 17:31:53 2024 -0700
    Adding a data access section to the singleCellMerged track for hg38 after a user asked to clarify the fields and cell types. refs #34636
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeSuper.html
  • lines changed 4, context: html, text, full: html, text
    b90835db13500c17be93628a25ec9f54e93036ad Thu Oct 17 22:59:40 2024 -0700
    import of GENCODE V47 final release
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV47.html
  • lines changed 1, context: html, text, full: html, text
    ea1eb588d4c4e4c46df64e6731e6309645c443db Thu Oct 17 23:38:43 2024 -0700
    forgot to update release dates for GENCODE
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    a54b7cc1f73f0ba053ee3ca633aa63d842b952ad Tue Oct 15 08:03:07 2024 -0700
    renaming self chain tracks a little, refs #28389
• src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeSuper.html
  • lines changed 4, context: html, text, full: html, text
    5f313d07411a062ed7d4995781c7c1f464015ad3 Thu Oct 17 23:35:14 2024 -0700
    import of GENCODE VM36
• src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM36.html
  • lines changed 1, context: html, text, full: html, text
    5f313d07411a062ed7d4995781c7c1f464015ad3 Thu Oct 17 23:35:14 2024 -0700
    import of GENCODE VM36
• src/hg/utils/automation/HgAutomate.pm
  • lines changed 35, context: html, text, full: html, text
    575fd05526889a61d457a5a31f96c86de0d637c8 Fri Oct 18 13:19:55 2024 -0700
    adding a tmpDir function to properly choose a temporary directory no redmine
• src/hg/utils/automation/doRepeatMasker.pl
  • lines changed 2, context: html, text, full: html, text
    4165c71e12cef21e41d7042b9f8f1ba71d9cd910 Fri Oct 18 13:29:11 2024 -0700
    eliminate direct use of /scratch/tmp and instead use appropriate tmpDir function no redmine
• src/hg/utils/automation/doSameSpeciesLiftOver.pl
  • lines changed 1, context: html, text, full: html, text
    6ed25cfed02721ee6b38518c73096800f0340b40 Fri Oct 18 13:37:51 2024 -0700
    eliminate direct use of /scratch/tmp and instead use appropriate tmpDir function no redmine
• src/hg/utils/automation/doSimpleRepeat.pl
  • lines changed 5, context: html, text, full: html, text
    4165c71e12cef21e41d7042b9f8f1ba71d9cd910 Fri Oct 18 13:29:11 2024 -0700
    eliminate direct use of /scratch/tmp and instead use appropriate tmpDir function no redmine
• src/hg/utils/automation/doWindowMasker.pl
  • lines changed 4, context: html, text, full: html, text
    4165c71e12cef21e41d7042b9f8f1ba71d9cd910 Fri Oct 18 13:29:11 2024 -0700
    eliminate direct use of /scratch/tmp and instead use appropriate tmpDir function no redmine
• src/hg/utils/otto/clinGen/makeClinGenCspec.sh
  • lines changed 47, context: html, text, full: html, text
    e0d7fb0ced1ee02fda0654b93eb1dd89ab50a9fb Wed Oct 16 12:38:43 2024 -0700
    Adding a newfile check so as not to blindly rebuild the file very time (also has no output to reduce emails) as well as adding a 20% file difference check required to replace the file.
• src/lib/freeType.c
  • lines changed 31, context: html, text, full: html, text
    8a95e44d1bd994593cd84cbc9dc6acaee5f14920 Wed Oct 16 16:42:07 2024 -0700
    change freeType font renderer to convert input string to Unicode before drawing. This fixes problems with the input string having non-ASCII characters in it.
• src/lib/makefile
  • lines changed 5, context: html, text, full: html, text
    5b266c5d6aa99269fda8c20871a83b4b2f334fc9 Mon Oct 21 08:41:56 2024 -0700
    some support for Windows 1252 encoding
• src/lib/psGfx.c
  • lines changed 38, context: html, text, full: html, text
    4dfb16e26cf4a3b2093c6491dfad4c30105f98c5 Mon Oct 21 08:39:57 2024 -0700
    get the ps driver to use the Windows 1252 encoding to get the 8-bit characters with the high bit set to print correctly
• src/lib/reEncodeFont.ps
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    5b266c5d6aa99269fda8c20871a83b4b2f334fc9 Mon Oct 21 08:41:56 2024 -0700
    some support for Windows 1252 encoding
• src/utils/hubtools/hubtools
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    c5a92d81293edb5d95fbeb37cbe381557e61fac0 Thu Oct 17 09:04:56 2024 -0700
    extending hubtools to convert track archives to hubs, only supports BED for now, refs #34472
• src/utils/qa/checkSessionsFromRR.py
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    00004668c7992ffd02d7734084f0a3afa2983300 Mon Oct 14 23:32:41 2024 -0700
    Removing lines and print statements that were used for troubleshooting, refs #34575
• src/utils/qa/checkSyncAndMetaDataAll.py
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    aa8d3802ce419bcc4b5a0d40ec267ed77c047756 Wed Oct 16 09:26:06 2024 -0700
    Updating script to accommodate mm39 relatedTrack_publict table for hgw1, no RM
• src/utils/qa/weeklybld/buildEnv.csh
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    c33c5892b1bb0e7eb1c24fbf4ed6601bb4836442 Mon Oct 21 10:57:18 2024 -0700
    v473 preview2, refs #34670

• lines changed: 1511
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