All File Changes

v485_preview2 to v485_base (2025-07-14 to 2025-07-21) v485

• confs/hgwbeta.hg.conf
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    45f0f4fb8edbf0d694b8fb3e09b11a971c474908 Sun Jul 20 01:11:14 2025 -0700
    Installing updated hg.conf files from UCSC servers
• confs/hgwdev.hg.conf
  • lines changed 2, context: html, text, full: html, text
    45f0f4fb8edbf0d694b8fb3e09b11a971c474908 Sun Jul 20 01:11:14 2025 -0700
    Installing updated hg.conf files from UCSC servers
• confs/rr.hg.conf
  • lines changed 5, context: html, text, full: html, text
    45f0f4fb8edbf0d694b8fb3e09b11a971c474908 Sun Jul 20 01:11:14 2025 -0700
    Installing updated hg.conf files from UCSC servers
• src/hg/cirm/gateway/htdocs/inc/footer.html
  • lines changed 8, context: html, text, full: html, text
    762c25934873f2505299de315189fd6e875d8e68 Wed Jul 16 13:31:25 2025 -0700
    Adding link to SSPsyGene Gene spreadsheet in footer.html
• src/hg/hgBlat/hgBlat.c
  • lines changed 1, context: html, text, full: html, text
    1a0e0397684a07248d32028a1eae40d6af9efba8 Fri Jul 18 18:06:37 2025 -0700
    Fixes 36104 when HTTPS CGI variable is not present for http (non-https) connection.
• src/hg/hgCustom/hgCustom.c
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    cf8b165f6f368e7b0add78408339b203e227715c Wed Jul 16 11:37:09 2025 -0700
    Updating the bedMethy/bigMethly help page links, refs #36002
• src/hg/hgHubConnect/hooks/pre-create.c
  • lines changed 7, context: html, text, full: html, text
    de181afb7e1d76c969ab0ec23c0b71de5aa7f1e4 Fri Jul 18 11:25:13 2025 -0700
    Fix hubspace pre-create hook to check for an apiKey only if a valid login cookie was not provided. Add a new hg.conf statement that allows for the data directory to be on a separate mount from the CGI, and swap strings around in the path appropriately to verify file existence when the file exists on another server
• src/hg/hgLiftOver/hgLiftOver.c
  • lines changed 12, context: html, text, full: html, text
    586f7cc282b1e3a2992ee81c4060277613c636a3 Thu Jul 17 11:30:34 2025 -0700
    fix problem with hgLiftOver not setting default new assembly correctly
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    f2f1a28c921a6f9c2bf1838d0940293492de4141 Thu Jul 17 11:42:05 2025 -0700
    Revert "fix problem with hgLiftOver not setting default new assembly correctly" This reverts commit 586f7cc282b1e3a2992ee81c4060277613c636a3.
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    93166927fccf9b848073b06e239a17e70aaa8886 Thu Jul 17 11:48:55 2025 -0700
    oops, I wasn't dealing with the no cart variable case. Return the funky scoring method for choosing default when no cart variables exist
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    124c43d2511935aab2d1f56d0aea92c1bdb97d7c Fri Jul 18 10:40:59 2025 -0700
    more fixin's to hgLiftOver
• src/hg/hgTables/bedMethyl.c
  • lines changed 52, context: html, text, full: html, text
    909e7e221b0f321d5d43c6507c1edcda89699875 Wed Jul 16 17:54:51 2025 -0700
    oops, forgot the new bedMethyl.c file
• src/hg/hgTables/custom.c
  • lines changed 4, context: html, text, full: html, text
    0f62f220d9099e6db7b4f3423caf5e0595831f4c Wed Jul 16 16:43:36 2025 -0700
    add table browser support for bedMethyl
• src/hg/hgTables/filterFields.c
  • lines changed 5, context: html, text, full: html, text
    0f62f220d9099e6db7b4f3423caf5e0595831f4c Wed Jul 16 16:43:36 2025 -0700
    add table browser support for bedMethyl
• src/hg/hgTables/hgTables.c
  • lines changed 1, context: html, text, full: html, text
    0f62f220d9099e6db7b4f3423caf5e0595831f4c Wed Jul 16 16:43:36 2025 -0700
    add table browser support for bedMethyl
• src/hg/hgTables/hgTables.h
  • lines changed 9, context: html, text, full: html, text
    0f62f220d9099e6db7b4f3423caf5e0595831f4c Wed Jul 16 16:43:36 2025 -0700
    add table browser support for bedMethyl
• src/hg/hgTables/joining.c
  • lines changed 1, context: html, text, full: html, text
    0f62f220d9099e6db7b4f3423caf5e0595831f4c Wed Jul 16 16:43:36 2025 -0700
    add table browser support for bedMethyl
• src/hg/hgTables/mainPage.c
  • lines changed 1, context: html, text, full: html, text
    a603cd3b10342a408470bfb955a3eb07abc01807 Wed Jul 16 08:03:12 2025 -0700
    typos on table browser tooltip, no redmine
• src/hg/hgTables/makefile
  • lines changed 1, context: html, text, full: html, text
    0f62f220d9099e6db7b4f3423caf5e0595831f4c Wed Jul 16 16:43:36 2025 -0700
    add table browser support for bedMethyl
• src/hg/hgTables/schema.c
  • lines changed 2, context: html, text, full: html, text
    0f62f220d9099e6db7b4f3423caf5e0595831f4c Wed Jul 16 16:43:36 2025 -0700
    add table browser support for bedMethyl
• src/hg/hgTracks/simpleTracks.c
  • lines changed 9, context: html, text, full: html, text
    04cec773db5f693feee13b50f64c2f58579400cc Thu Jul 17 14:33:36 2025 -0700
    Updating the mouseOver and the hgc fields for bedMethyl, refs #33504
• src/hg/htdocs/FAQ/FAQformat.html
  • lines changed 1, context: html, text, full: html, text
    cf8b165f6f368e7b0add78408339b203e227715c Wed Jul 16 11:37:09 2025 -0700
    Updating the bedMethy/bigMethly help page links, refs #36002
• src/hg/htdocs/goldenPath/help/bedMethyl.html
  • lines changed 158, context: html, text, full: html, text
    5884b9f213c7d339352dda9c40a6466ce3e12a1c Wed Jul 16 11:58:33 2025 -0700
    Updating the bedMethyl/bigMethyl Track Format page, refs #36002
• src/hg/htdocs/goldenPath/help/customTrackText.html
  • lines changed 3, context: html, text, full: html, text
    cf8b165f6f368e7b0add78408339b203e227715c Wed Jul 16 11:37:09 2025 -0700
    Updating the bedMethy/bigMethly help page links, refs #36002
• src/hg/htdocs/goldenPath/help/gbic.html
  • lines changed 3, context: html, text, full: html, text
    87753ed6a5ebbc04ad58ab9a457b2fe403415b3a Thu Jul 17 15:28:00 2025 -0700
    Quietly retiring GBiB in favor of GBiC/docker, refs #35611
• src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
  • lines changed 2, context: html, text, full: html, text
    cf8b165f6f368e7b0add78408339b203e227715c Wed Jul 16 11:37:09 2025 -0700
    Updating the bedMethy/bigMethly help page links, refs #36002
• src/hg/htdocs/goldenPath/help/mirror.html
  • lines changed 85, context: html, text, full: html, text
    87753ed6a5ebbc04ad58ab9a457b2fe403415b3a Thu Jul 17 15:28:00 2025 -0700
    Quietly retiring GBiB in favor of GBiC/docker, refs #35611
  • lines changed 3, context: html, text, full: html, text
    0a954493d5a033ad97697eed711175c017d74d22 Thu Jul 17 16:04:28 2025 -0700
    Adding docker page link to product README.txt and mirror.html help page, refs #34915
• src/hg/htdocs/goldenPath/help/mirrorManual.html
  • lines changed 6, context: html, text, full: html, text
    87753ed6a5ebbc04ad58ab9a457b2fe403415b3a Thu Jul 17 15:28:00 2025 -0700
    Quietly retiring GBiB in favor of GBiC/docker, refs #35611
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html
  • lines changed 1, context: html, text, full: html, text
    ae186fdfc2fc08fcf80d80ee099cfbed07ad773e Thu Jul 17 13:19:38 2025 -0700
    Clarifying that type bigChain needs to have the targetDb specified, refs #35948
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 1, context: html, text, full: html, text
    cf8b165f6f368e7b0add78408339b203e227715c Wed Jul 16 11:37:09 2025 -0700
    Updating the bedMethy/bigMethly help page links, refs #36002
  • lines changed 2, context: html, text, full: html, text
    ae186fdfc2fc08fcf80d80ee099cfbed07ad773e Thu Jul 17 13:19:38 2025 -0700
    Clarifying that type bigChain needs to have the targetDb specified, refs #35948
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 33, context: html, text, full: html, text
    2c7d12ef0aab69c0f6e2c27da2a8e89dc32a6428 Tue Jul 15 14:48:35 2025 -0700
    adding announcement for encode4 long-read transcript triplets track, refs #31368
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    226898981d9edeea42f4c8bfb7eef501cbf770ac Tue Jul 15 14:55:19 2025 -0700
    Announcing two new pathogenicity prediction tracks, refs #35806 #35922
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    7e925f3a94c8253930cc591727980af204b95f04 Tue Jul 15 15:03:43 2025 -0700
    Fixing MCAP track that linked to MutScore, refs #35806 #35922
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    c611e789c10f1fceb3d7b0b7935598eb0d7dddce Tue Jul 15 15:54:45 2025 -0700
    tweaking hrefs on indexNews to point to unique spots on newsarch page
  • lines changed 1, context: html, text, full: html, text
    5068f9fb8a6f15e6f71834e20db77e65e85528cf Wed Jul 16 11:16:59 2025 -0700
    slightly tweaking name so that bitly link continues to work
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    aa9e3855a9fcfdce411168009e1d14cff6ac4155 Fri Jul 18 12:16:52 2025 -0700
    Feedback from CR, refs #36086
• src/hg/htdocs/images/bedMethylEx.jpg
  • lines changed 0, context: html, text, full: html, text
    5884b9f213c7d339352dda9c40a6466ce3e12a1c Wed Jul 16 11:58:33 2025 -0700
    Updating the bedMethyl/bigMethyl Track Format page, refs #36002
• src/hg/htdocs/indexNews.html
  • lines changed 12, context: html, text, full: html, text
    2c7d12ef0aab69c0f6e2c27da2a8e89dc32a6428 Tue Jul 15 14:48:35 2025 -0700
    adding announcement for encode4 long-read transcript triplets track, refs #31368
  • lines changed 12, context: html, text, full: html, text
    226898981d9edeea42f4c8bfb7eef501cbf770ac Tue Jul 15 14:55:19 2025 -0700
    Announcing two new pathogenicity prediction tracks, refs #35806 #35922
  • lines changed 4, context: html, text, full: html, text
    c611e789c10f1fceb3d7b0b7935598eb0d7dddce Tue Jul 15 15:54:45 2025 -0700
    tweaking hrefs on indexNews to point to unique spots on newsarch page
  • lines changed 1, context: html, text, full: html, text
    5068f9fb8a6f15e6f71834e20db77e65e85528cf Wed Jul 16 11:16:59 2025 -0700
    slightly tweaking name so that bitly link continues to work
• src/hg/htdocs/license/index.html
  • lines changed 8, context: html, text, full: html, text
    196c5cd4c64b6767430e9aeb4c825efb40e43ab5 Thu Jul 17 13:29:33 2025 -0700
    Removing www and old email reference in favor of a single ML for all licensing questions. Refs #35170
• src/hg/inc/versionInfo.h
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    4e659bf04039e0f74771574ce690495b260bfa58 Mon Jul 21 12:50:15 2025 -0700
    New version number v485
• src/hg/lib/bedMethyl.c
  • lines changed 9, context: html, text, full: html, text
    04cec773db5f693feee13b50f64c2f58579400cc Thu Jul 17 14:33:36 2025 -0700
    Updating the mouseOver and the hgc fields for bedMethyl, refs #33504
• src/hg/lib/cart.c
  • lines changed 3, context: html, text, full: html, text
    4baad074794d51613f63e200e56f355c5a8448d9 Wed Jul 16 00:03:16 2025 -0700
    skip captcha on hgSession, refs #36089
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    f04a16bbb43853853b66f95e841eba47476424ea Wed Jul 16 15:22:34 2025 -0700
    Make hgLogin excempt from the captcha, refs #36089
• src/hg/lib/hdb.c
  • lines changed 7, context: html, text, full: html, text
    f59e5f01716dc12ed4546fd5a0d23657b86fa704 Fri Jul 18 14:49:10 2025 -0700
    more futzing around with hgLiftOver
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    601d8ad878b9cd491de411fde57453f2da7608bb Fri Jul 18 18:00:28 2025 -0700
    it turns out that hOrganism and hGenome are basically the same thing but both have to be working with Genark
• src/hg/lib/userdata.c
  • lines changed 36, context: html, text, full: html, text
    de181afb7e1d76c969ab0ec23c0b71de5aa7f1e4 Fri Jul 18 11:25:13 2025 -0700
    Fix hubspace pre-create hook to check for an apiKey only if a valid login cookie was not provided. Add a new hg.conf statement that allows for the data directory to be on a separate mount from the CGI, and swap strings around in the path appropriately to verify file existence when the file exists on another server
• src/hg/makeDb/doc/asmHubs/commonNames.py
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    a010260c82d5dc73f51bf6e97fe81a24bccd53e2 Sat Jul 19 15:59:50 2025 -0700
    do not need to prefix bacteria with the word "bacteria"
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 62, context: html, text, full: html, text
    2fd4a65a7038c1d266c1eaa68934f6c65e5e34d0 Tue Jul 15 12:38:48 2025 -0700
    RefSeq update adding a number of assemblies refs #29545
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    89922ed38bddbfe18b5059fef25367ab0788bd1c Wed Jul 16 19:39:41 2025 -0700
    adding one per user request refs #29545
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    f19415b648e74cdb12d3cba860a82748f49b1018 Sun Jul 20 00:14:08 2025 -0700
    adding all "reference" sequences for RefSeq refs #29545
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    1ba5c3f59d5400dd0f46056d82dc33c11696f7e6 Mon Jul 21 12:09:45 2025 -0700
    Plasmodium malariae got on the wrong list moved from bacteria to invertebrate refs @29545
• src/hg/makeDb/doc/asmHubs/sciNameOverride.txt
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    f1365818b0bbaf5b2c8ab01b848b26eec33be087 Mon Jul 14 14:19:41 2025 -0700
    Per advice from Francoise, do not override taxId for Bos indicus Bost taurus cross no redmine
• src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    89922ed38bddbfe18b5059fef25367ab0788bd1c Wed Jul 16 19:39:41 2025 -0700
    adding one per user request refs #29545
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    f19415b648e74cdb12d3cba860a82748f49b1018 Sun Jul 20 00:14:08 2025 -0700
    adding all "reference" sequences for RefSeq refs #29545
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    1ba5c3f59d5400dd0f46056d82dc33c11696f7e6 Mon Jul 21 12:09:45 2025 -0700
    Plasmodium malariae got on the wrong list moved from bacteria to invertebrate refs @29545
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
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    2fd4a65a7038c1d266c1eaa68934f6c65e5e34d0 Tue Jul 15 12:38:48 2025 -0700
    RefSeq update adding a number of assemblies refs #29545
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    f19415b648e74cdb12d3cba860a82748f49b1018 Sun Jul 20 00:14:08 2025 -0700
    adding all "reference" sequences for RefSeq refs #29545
• src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
  • lines changed 6, context: html, text, full: html, text
    2fd4a65a7038c1d266c1eaa68934f6c65e5e34d0 Tue Jul 15 12:38:48 2025 -0700
    RefSeq update adding a number of assemblies refs #29545
• src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv
  • lines changed 14, context: html, text, full: html, text
    2fd4a65a7038c1d266c1eaa68934f6c65e5e34d0 Tue Jul 15 12:38:48 2025 -0700
    RefSeq update adding a number of assemblies refs #29545
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
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    2fd4a65a7038c1d266c1eaa68934f6c65e5e34d0 Tue Jul 15 12:38:48 2025 -0700
    RefSeq update adding a number of assemblies refs #29545
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    1ba5c3f59d5400dd0f46056d82dc33c11696f7e6 Mon Jul 21 12:09:45 2025 -0700
    Plasmodium malariae got on the wrong list moved from bacteria to invertebrate refs @29545
• src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt
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    74b681671bc11e8cd7c4e5e582080ce28afc7e27 Tue Jul 15 12:44:33 2025 -0700
    RefSeq update adding a number of assemblies refs #29545
• src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
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    74b681671bc11e8cd7c4e5e582080ce28afc7e27 Tue Jul 15 12:44:33 2025 -0700
    RefSeq update adding a number of assemblies refs #29545
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
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    2fd4a65a7038c1d266c1eaa68934f6c65e5e34d0 Tue Jul 15 12:38:48 2025 -0700
    RefSeq update adding a number of assemblies refs #29545
• src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv
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    2fd4a65a7038c1d266c1eaa68934f6c65e5e34d0 Tue Jul 15 12:38:48 2025 -0700
    RefSeq update adding a number of assemblies refs #29545
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    f19415b648e74cdb12d3cba860a82748f49b1018 Sun Jul 20 00:14:08 2025 -0700
    adding all "reference" sequences for RefSeq refs #29545
• src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
  • lines changed 147, context: html, text, full: html, text
    2fd4a65a7038c1d266c1eaa68934f6c65e5e34d0 Tue Jul 15 12:38:48 2025 -0700
    RefSeq update adding a number of assemblies refs #29545
• src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
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    2fd4a65a7038c1d266c1eaa68934f6c65e5e34d0 Tue Jul 15 12:38:48 2025 -0700
    RefSeq update adding a number of assemblies refs #29545
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    f19415b648e74cdb12d3cba860a82748f49b1018 Sun Jul 20 00:14:08 2025 -0700
    adding all "reference" sequences for RefSeq refs #29545
• src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv
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    f19415b648e74cdb12d3cba860a82748f49b1018 Sun Jul 20 00:14:08 2025 -0700
    adding all "reference" sequences for RefSeq refs #29545
• src/hg/makeDb/trackDb/human/exomeProbesets.html
  • lines changed 5, context: html, text, full: html, text
    085c07aa3fdb605a55e2d29e2dff4b26fe2f35bf Fri Jul 18 17:05:17 2025 -0700
    Moving the Bionano track to the Array Probesets composite. Updating the track description pages. Still need to update the Display conventions section for the new track, refs #36033
• src/hg/makeDb/trackDb/human/hg19/exomeProbesets.ra
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    c0f1d95a48fe1772b5f6e76c2a2f21ac7283da10 Fri Jul 18 14:10:59 2025 -0700
    Updating the Bionano name in the long/short label. Updating the color of the track since it was difficult to read, refs #36033
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    085c07aa3fdb605a55e2d29e2dff4b26fe2f35bf Fri Jul 18 17:05:17 2025 -0700
    Moving the Bionano track to the Array Probesets composite. Updating the track description pages. Still need to update the Display conventions section for the new track, refs #36033
• src/hg/makeDb/trackDb/human/hg19/gencodePfam.html
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    aa9e3855a9fcfdce411168009e1d14cff6ac4155 Fri Jul 18 12:16:52 2025 -0700
    Feedback from CR, refs #36086
• src/hg/makeDb/trackDb/human/hg19/genotypeArrays.html
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    085c07aa3fdb605a55e2d29e2dff4b26fe2f35bf Fri Jul 18 17:05:17 2025 -0700
    Moving the Bionano track to the Array Probesets composite. Updating the track description pages. Still need to update the Display conventions section for the new track, refs #36033
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 10, context: html, text, full: html, text
    085c07aa3fdb605a55e2d29e2dff4b26fe2f35bf Fri Jul 18 17:05:17 2025 -0700
    Moving the Bionano track to the Array Probesets composite. Updating the track description pages. Still need to update the Display conventions section for the new track, refs #36033
• src/hg/makeDb/trackDb/human/hg38/clsLongReadRna.html
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    c3c5193ee9746f33a63f7b66470945885d993576 Mon Jul 14 15:59:30 2025 -0700
    Fixing a view typo that was preventing the per capture model views from showing, and adding the right formatting to the desc page. Refs #35122
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    b78028de73d529af4ba48a83bbc38ae774169f13 Mon Jul 14 17:50:20 2025 -0700
    update clsLongReadRna doc based on QA feedback
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    67e1c1cc17df57310499e4aad3c19555e97c21bf Mon Jul 14 18:04:32 2025 -0700
    impoved text in clsLongReadRna track description
• src/hg/makeDb/trackDb/human/hg38/clsLongReadRna.ra
  • lines changed 2, context: html, text, full: html, text
    c3c5193ee9746f33a63f7b66470945885d993576 Mon Jul 14 15:59:30 2025 -0700
    Fixing a view typo that was preventing the per capture model views from showing, and adding the right formatting to the desc page. Refs #35122
  • lines changed 2, context: html, text, full: html, text
    b78028de73d529af4ba48a83bbc38ae774169f13 Mon Jul 14 17:50:20 2025 -0700
    update clsLongReadRna doc based on QA feedback
• src/hg/makeDb/trackDb/human/hg38/exomeProbesets.ra
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    c0f1d95a48fe1772b5f6e76c2a2f21ac7283da10 Fri Jul 18 14:10:59 2025 -0700
    Updating the Bionano name in the long/short label. Updating the color of the track since it was difficult to read, refs #36033
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    085c07aa3fdb605a55e2d29e2dff4b26fe2f35bf Fri Jul 18 17:05:17 2025 -0700
    Moving the Bionano track to the Array Probesets composite. Updating the track description pages. Still need to update the Display conventions section for the new track, refs #36033
• src/hg/makeDb/trackDb/human/hg38/genotypeArrays.html
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    085c07aa3fdb605a55e2d29e2dff4b26fe2f35bf Fri Jul 18 17:05:17 2025 -0700
    Moving the Bionano track to the Array Probesets composite. Updating the track description pages. Still need to update the Display conventions section for the new track, refs #36033
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    085c07aa3fdb605a55e2d29e2dff4b26fe2f35bf Fri Jul 18 17:05:17 2025 -0700
    Moving the Bionano track to the Array Probesets composite. Updating the track description pages. Still need to update the Display conventions section for the new track, refs #36033
• src/hg/makeDb/trackDb/human/predictionScoresSuper.html
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    26104d2d2816d1fb66d610bfa3af0ef58c13bb40 Mon Jul 14 16:40:34 2025 -0700
    Clarifying which assemblies the tracks are on, and removing release tags. Refs #35806
• src/hg/makeDb/trackDb/human/predictionScoresSuper.ra
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    26104d2d2816d1fb66d610bfa3af0ef58c13bb40 Mon Jul 14 16:40:34 2025 -0700
    Clarifying which assemblies the tracks are on, and removing release tags. Refs #35806
• src/hg/makeDb/trackDb/mouse/mm10/clsLongReadRna.html
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    c3c5193ee9746f33a63f7b66470945885d993576 Mon Jul 14 15:59:30 2025 -0700
    Fixing a view typo that was preventing the per capture model views from showing, and adding the right formatting to the desc page. Refs #35122
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    b78028de73d529af4ba48a83bbc38ae774169f13 Mon Jul 14 17:50:20 2025 -0700
    update clsLongReadRna doc based on QA feedback
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    67e1c1cc17df57310499e4aad3c19555e97c21bf Mon Jul 14 18:04:32 2025 -0700
    impoved text in clsLongReadRna track description
• src/hg/makeDb/trackDb/mouse/mm10/clsLongReadRna.ra
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    c3c5193ee9746f33a63f7b66470945885d993576 Mon Jul 14 15:59:30 2025 -0700
    Fixing a view typo that was preventing the per capture model views from showing, and adding the right formatting to the desc page. Refs #35122
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    b78028de73d529af4ba48a83bbc38ae774169f13 Mon Jul 14 17:50:20 2025 -0700
    update clsLongReadRna doc based on QA feedback
• src/inc/srcVersion.h
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    4e659bf04039e0f74771574ce690495b260bfa58 Mon Jul 21 12:50:15 2025 -0700
    New version number v485
• src/product/README.txt
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    87753ed6a5ebbc04ad58ab9a457b2fe403415b3a Thu Jul 17 15:28:00 2025 -0700
    Quietly retiring GBiB in favor of GBiC/docker, refs #35611
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    0a954493d5a033ad97697eed711175c017d74d22 Thu Jul 17 16:04:28 2025 -0700
    Adding docker page link to product README.txt and mirror.html help page, refs #34915
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    9dd586e55ee314f53581859ac9bd2a22b7df8e09 Thu Jul 17 16:24:10 2025 -0700
    Changing link to be relative, no RM.
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    09335ca4d77990f9dc3bb12aeb48c7d4a0eec3e6 Thu Jul 17 16:25:34 2025 -0700
    Revert "Changing link to be relative, no RM." This reverts commit 9dd586e55ee314f53581859ac9bd2a22b7df8e09. This is because this page needs absolute links as it lives on github.
• src/product/mirrorManual.txt
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    87753ed6a5ebbc04ad58ab9a457b2fe403415b3a Thu Jul 17 15:28:00 2025 -0700
    Quietly retiring GBiB in favor of GBiC/docker, refs #35611
• src/utils/qa/weeklybld/buildEnv.csh
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    b6b08702d2899c00ac1b3a3f17e965cb2f9141a6 Mon Jul 21 12:49:48 2025 -0700
    v485 final build, refs #36036

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