Commits for max

v496_base to v497_preview (2026-03-30 to 2026-04-06) v497

f0cd10388499d445c52a3642a4b9111c5f403b7d Mon Mar 30 15:17:28 2026 -0700

• improving error message when db was not found, refs #37305
  • src/hg/lib/cart.c - lines changed 5, context: html, text, full: html, text

dc1e0e76dbe49861bd0ebe8db64e27f587737794 Mon Mar 30 15:40:03 2026 -0700

• adding two more phased variants tracks, refs #37306
  • src/hg/hgc/vcfClick.c - lines changed 93, context: html, text, full: html, text
  • src/hg/inc/vcfUi.h - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/trackDbCustom.c - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/varFreqs.txt - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/han945SvVcf.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/lrSv1kgOnt.html - lines changed 97, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/phasedVars.ra - lines changed 22, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
  • src/utils/bigGuessDb/bigGuessDb - lines changed 23, context: html, text, full: html, text

9de039a7dceb056ccfa604e0ac38e0bb901ef1ec Mon Mar 30 17:11:20 2026 -0700

• MPRA track updates, #34284
  • src/hg/makeDb/doc/hg38/mprabase.txt - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/mpravardb.txt - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/mpra.html - lines changed 207, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/mpra.ra - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/mpraVarDb.html - lines changed 220, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/mprabase.html - lines changed 129, context: html, text, full: html, text

93ffd483ab062d09df2743ccc0e32013e91fbd76 Wed Apr 1 07:06:38 2026 -0700

• renaming mpra supertrack to regulatory functional assays, suggested by Katie Pollard, refs #34284
  • src/hg/makeDb/trackDb/human/hg38/regfunc.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/makeDb/trackDb/human/hg38/regfunc.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

31b7d4342181171f8b8271e5ed5b5cdaa22feeb6 Wed Apr 1 07:30:30 2026 -0700

• fixing up regfunc docs and tdb
  • src/hg/makeDb/trackDb/human/hg38/regfunc.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/regfunc.ra - lines changed 3, context: html, text, full: html, text

d1e99290a854df9b05063c10c91466f6e8fa034a Sun Apr 5 23:12:31 2026 -0700

• Revert "renaming mpra supertrack to regulatory functional assays, suggested by Katie Pollard, refs #34284" This reverts commit 93ffd483ab062d09df2743ccc0e32013e91fbd76.
  • src/hg/makeDb/trackDb/human/hg38/mpra.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/makeDb/trackDb/human/hg38/mpra.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

ac4df3685a2c6944ad7a07011531794fc2acec79 Sun Apr 5 23:14:25 2026 -0700

• docs update
  • src/hg/makeDb/doc/hg38/mpra.txt - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/mprabase.txt - lines changed 4, context: html, text, full: html, text

5a202e0b6c8f6ec66e11233560d9dd90fc1bf087 Sun Apr 5 23:15:42 2026 -0700

• adding long-read SV track, no redmine yet
  • src/hg/makeDb/trackDb/human/lrSv.ra - lines changed 111, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 2, context: html, text, full: html, text

697dc500699e5926a9ba084a264354baefbafb2f Sun Apr 5 23:20:10 2026 -0700

• docs update
  • src/hg/makeDb/trackDb/human/hg38/mpra.html - lines changed 8, context: html, text, full: html, text

66419809158cb8192f2d8b19b43f4484a4d4c354 Mon Apr 6 08:57:28 2026 -0700

• tdb fix
  • src/hg/makeDb/trackDb/human/lrSv.ra - lines changed 2, context: html, text, full: html, text