All File Changes
v266_base to v267_preview (2012-04-24 to 2012-05-01) v267
- python/lib/ucscgenomics/bed.py
- lines changed 49, context: html, text, full: html, text
removed bed textstyle from ucscgenomics lib
- python/lib/ucscgenomics/cv.py
- lines changed 68, context: html, text, full: html, text
added new changes to cv.py to allow mouseCellType to work from within code
- lines changed 1, context: html, text, full: html, text
added small fix for cv.py
- python/lib/ucscgenomics/qa.py
- lines changed 312, context: html, text, full: html, text
Moved qa.py to qa/encode/tableCheck.py.
- python/lib/ucscgenomics/qa/__init__.py
- lines changed 0, context: html, text, full: html, text
Moved qa.py to qa/encode/tableCheck.py.
- python/lib/ucscgenomics/qa/encode/__init__.py
- lines changed 0, context: html, text, full: html, text
Moved qa.py to qa/encode/tableCheck.py.
- python/lib/ucscgenomics/qa/encode/tableCheck.py
- lines changed 312, context: html, text, full: html, text
Moved qa.py to qa/encode/tableCheck.py.
- lines changed 20, context: html, text, full: html, text
Moved callHgsql function from qa/encode/tableCheck.py to a new file: qa/qaUtils.py. Removed some unused lines from the top of tableCheck.py.
- python/lib/ucscgenomics/qa/qaUtils.py
- lines changed 14, context: html, text, full: html, text
Moved callHgsql function from qa/encode/tableCheck.py to a new file: qa/qaUtils.py. Removed some unused lines from the top of tableCheck.py.
- python/lib/ucscgenomics/textstyle.py
- lines changed 40, context: html, text, full: html, text
removed bed textstyle from ucscgenomics lib
- python/style.txt
- lines changed 6, context: html, text, full: html, text
Added guidlines for length's of modules, functions and methods. Redmine #7162.
- python/users/kent/django/mysite/README
- lines changed 3, context: html, text, full: html, text
Adding READMEs to all of the Django directories.
- python/users/kent/django/mysite/djBook/README
- lines changed 1, context: html, text, full: html, text
Adding READMEs to all of the Django directories.
- python/users/kent/django/mysite/jkSp/README
- lines changed 2, context: html, text, full: html, text
Adding READMEs to all of the Django directories.
- src/hg/encode/DAFs/3.0/mm9/wgEncodeCshlLongRnaSeq.daf
- lines changed 6, context: html, text, full: html, text
Added protocol documents view and removed downloadOnly for Junctions. Redmine #7089.
- src/hg/encode/DAFs/3.0/mm9/wgEncodeSydhRnaSeq.daf
- lines changed 7, context: html, text, full: html, text
Fixed DAF to use Plus and Minus Raw Signal. Redmine #829.
- src/hg/encode/encodeLoad/doEncodeLoad.pl
- lines changed 10, context: html, text, full: html, text
restructiring for new validateFiles and .as and .sql locations
- src/hg/encode/encodeLoad/installSqlSchemas.pl
- lines changed 52, context: html, text, full: html, text
reworked installSchemas to actually work and modified make to compensate
- src/hg/encode/encodeLoad/makefile
- lines changed 1, context: html, text, full: html, text
reworked installSchemas to actually work and modified make to compensate
- src/hg/encode/encodeValidate/doEncodeValidate.pl
- lines changed 308, context: html, text, full: html, text
restructuring for the enw validateFiles
- lines changed 3, context: html, text, full: html, text
filtering on bam only for validation settings
- lines changed 9, context: html, text, full: html, text
removed some debugging prints
- lines changed 1, context: html, text, full: html, text
forgot to pull variable out
- lines changed 1, context: html, text, full: html, text
I don't think we meant to drop pdf
- src/hg/hgTables/hgTables.c
- lines changed 1, context: html, text, full: html, text
Adding a missing va_end for tidiness' sake.
- src/hg/hgTrackUi/hgTrackUi.c
- lines changed 2, context: html, text, full: html, text
use a union in jsonElement to simplify code and eliminate typecasts (per suggestion of angie and tim); rename jsonHash to jsonObject; fix some obsolete comments
- src/hg/hgTracks/hgTracks.c
- lines changed 18, context: html, text, full: html, text
use a union in jsonElement to simplify code and eliminate typecasts (per suggestion of angie and tim); rename jsonHash to jsonObject; fix some obsolete comments
- src/hg/hgTracks/hgTracks.h
- lines changed 1, context: html, text, full: html, text
use a union in jsonElement to simplify code and eliminate typecasts (per suggestion of angie and tim); rename jsonHash to jsonObject; fix some obsolete comments
- src/hg/hgTracks/imageV2.c
- lines changed 43, context: html, text, full: html, text
use a union in jsonElement to simplify code and eliminate typecasts (per suggestion of angie and tim); rename jsonHash to jsonObject; fix some obsolete comments
- src/hg/hgTracks/imageV2.h
- lines changed 2, context: html, text, full: html, text
fix things broken by changes in jsHelper
- src/hg/hgTracks/searchTracks.c
- lines changed 1, context: html, text, full: html, text
use a union in jsonElement to simplify code and eliminate typecasts (per suggestion of angie and tim); rename jsonHash to jsonObject; fix some obsolete comments
- src/hg/hgVarAnnogrator/hgVarAnnogrator.c
- lines changed 548, context: html, text, full: html, text
Feature #6152 (Variant Annotation Tool): Added region type and positioninputs to UI -- and it actually executes some queries now!
- lines changed 121, context: html, text, full: html, text
UI for #6152 (Variant Annotation Tool): position input is now searchedonblur and before we submit the page to execute a query, so that if a position
is not found or has multiple matches, the user is returned to the UI to fix it.
- lines changed 15, context: html, text, full: html, text
fix things broken by changes in jsHelper
- src/hg/hgc/pubs.c
- lines changed 184, context: html, text, full: html, text
changed almost all html in pubs hgc page to get rid of unnecessary tables (this part does not conform to kent style but really looks better)
- src/hg/htdocs/ENCODE/analysisTools.html
- lines changed 64, context: html, text, full: html, text
Put tools into categories and alphabetized per Kate's request (redmine #7701)
- lines changed 5, context: html, text, full: html, text
Made changes suggested by Katrina in code review (redmine #7738)
- src/hg/htdocs/ENCODE/dataMatrix/dataMatrix.css
- lines changed 1, context: html, text, full: html, text
Adjust colors of dots (cancer vs. normal cell types for color-blind accomodation
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataMatrixInclude.html
- lines changed 26, context: html, text, full: html, text
Refine Help text, based on input from Donna
- lines changed 1, context: html, text, full: html, text
Change help link to a little more formal language
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataSummaryHuman.html
- lines changed 1, context: html, text, full: html, text
Tweak title as per Donna's input
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataSummaryInclude.html
- lines changed 2, context: html, text, full: html, text
Tweak title as per Donna's input
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataSummaryMouse.html
- lines changed 1, context: html, text, full: html, text
Tweak title as per Donna's input
- src/hg/htdocs/ENCODE/downloadsMouse.html
- lines changed 4, context: html, text, full: html, text
Added line for PSU Histone (redmine #111)
- src/hg/htdocs/ENCODE/encodeTools.html
- lines changed 178, context: html, text, full: html, text
Put tools into categories and alphabetized per Kate's request (redmine #7701)
- lines changed 1, context: html, text, full: html, text
Corrected spelling of RSEQtools (redmine #7701)
- lines changed 13, context: html, text, full: html, text
Made changes suggested by Katrina in code review (redmine #7738 note 8)
- lines changed 34, context: html, text, full: html, text
Made changes suggested by Katrina in code review (redmine #7738)
- src/hg/htdocs/ENCODE/softwareTools.html
- lines changed 2, context: html, text, full: html, text
Put tools into categories and alphabetized per Kate's request (redmine #7701)
- src/hg/htdocs/FAQ/FAQformat.html
- lines changed 1, context: html, text, full: html, text
Corrected spelling of bedGraph.
- src/hg/htdocs/admin/mirror.html
- lines changed 3, context: html, text, full: html, text
added links to blogs for installing mirror on Ubuntu and CentOS
- src/hg/htdocs/goldenPath/help/bigWig.html
- lines changed 2, context: html, text, full: html, text
Added links to two words, making things a little easier for the user.
- src/hg/htdocs/images/Casanova_papio_anubis.jpg
- lines changed 0, context: html, text, full: html, text
added image of olive baboon - the actual species sequenced
- lines changed 0, context: html, text, full: html, text
changed name because the animal's name was Casanova, not his species
- src/hg/htdocs/images/Dipodomys_ordii.jpg
- lines changed 0, context: html, text, full: html, text
added kangRat image from wikipedia
- src/hg/htdocs/images/Erinaceus_europaeus.jpg
- lines changed 0, context: html, text, full: html, text
added wikipedia image of hedgehog
- src/hg/htdocs/images/Ochotona_princeps.jpg
- lines changed 0, context: html, text, full: html, text
added wikipedia image of pika
- src/hg/htdocs/images/Otolemur_garnettii.jpg
- lines changed 0, context: html, text, full: html, text
made image smaller (500 to 320 pix wide) to speed loading
- src/hg/htdocs/images/Papio_anubis.jpg
- lines changed 0, context: html, text, full: html, text
changed name because the animal's name was Casanova, not his species
- src/hg/htdocs/images/Procavia_capensis.jpg
- src/hg/htdocs/images/Pteropus_vampyrus.jpg
- lines changed 0, context: html, text, full: html, text
added wikipedia vampire (megabat) image
- lines changed 0, context: html, text, full: html, text
uploaded wrong version of image (too large). fixed
- src/hg/htdocs/images/Saimiri_boliviensis.jpg
- lines changed 0, context: html, text, full: html, text
added image from wikipedia
- src/hg/htdocs/images/Sorex_araneus.jpg
- lines changed 0, context: html, text, full: html, text
added image of shrew from wikipedia
- src/hg/htdocs/images/Spermophilus_tridecemlineatus.jpg
- lines changed 0, context: html, text, full: html, text
image of 13-lined squirrel from wikipedia
- src/hg/htdocs/images/Tarsius_syrichta.jpg
- lines changed 0, context: html, text, full: html, text
added tarsier image from wikipedia
- src/hg/htdocs/images/Trichechus_manatus.jpg
- src/hg/htdocs/images/Tursiops_truncatus.jpg
- lines changed 0, context: html, text, full: html, text
added image of dolphin from wikipedia
- src/hg/htdocs/inc/encodeProjectSoftware.topbar.html
- lines changed 38, context: html, text, full: html, text
Added new menu bar file that includes a link to Software Tools (redmine #7701)
- lines changed 1, context: html, text, full: html, text
Added a dash between 'Data Standards' and 'Software Tools' (redmine #7701)
- src/hg/htdocs/mirror.html
- lines changed 16, context: html, text, full: html, text
removed Duke mirror. Terry is taking it down.
- lines changed 2, context: html, text, full: html, text
temporarily commenting out links to the Queensland mirror, which is down for a bit
- src/hg/htdocs/style/HGStyle.css
- lines changed 20, context: html, text, full: html, text
Max noticed that the font-family declarations for 'sans-serif' were often mistyped as 'san-serif'. Fixed that in 18-20 cases.
- src/hg/inc/hCommon.h
- lines changed 3, context: html, text, full: html, text
Added hgVarAnnogratorName() (#6152).
- src/hg/inc/hdb.h
- lines changed 5, context: html, text, full: html, text
Feature #6152 (Variant Annotation Tool): Added region type and positioninputs to UI -- and it actually executes some queries now!
- src/hg/inc/jsHelper.h
- lines changed 74, context: html, text, full: html, text
use a union in jsonElement to simplify code and eliminate typecasts (per suggestion of angie and tim); rename jsonHash to jsonObject; fix some obsolete comments
- src/hg/inc/soterm.h
- lines changed 2, context: html, text, full: html, text
ongoing #6152. Added support for variants longer than 1 in CDS.
- lines changed 1, context: html, text, full: html, text
more work on #6152. Now with in-frame deletions!
- src/hg/inc/variant.h
- lines changed 5, context: html, text, full: html, text
ongoing #6152. Added support for variants longer than 1 in CDS.
- src/hg/inc/web.h
- lines changed 3, context: html, text, full: html, text
UI for #6152 (Variant Annotation Tool): position input is now searchedonblur and before we submit the page to execute a query, so that if a position
is not found or has multiple matches, the user is returned to the UI to fix it.
- src/hg/js/encodeMatrix.js
- lines changed 1, context: html, text, full: html, text
URI encode mdb values (e.g. CD20+) in search URL
- src/hg/js/hgVarAnnogrator.js
- lines changed 62, context: html, text, full: html, text
Feature #6152 (Variant Annotation Tool): Added region type and positioninputs to UI -- and it actually executes some queries now!
- lines changed 37, context: html, text, full: html, text
UI for #6152 (Variant Annotation Tool): position input is now searchedonblur and before we submit the page to execute a query, so that if a position
is not found or has multiple matches, the user is returned to the UI to fix it.
- src/hg/lib/annoGratorGpVar.c
- lines changed 2, context: html, text, full: html, text
more work on #6152. Now with in-frame deletions!
- src/hg/lib/gpFx.c
- lines changed 58, context: html, text, full: html, text
ongoing #6152. Added support for variants longer than 1 in CDS.
- lines changed 101, context: html, text, full: html, text
more work on #6152. Now with in-frame deletions!
- src/hg/lib/hCommon.c
- lines changed 7, context: html, text, full: html, text
Added hgVarAnnogratorName() (#6152).
- src/hg/lib/hdb.c
- lines changed 36, context: html, text, full: html, text
Feature #6152 (Variant Annotation Tool): Added region type and positioninputs to UI -- and it actually executes some queries now!
- src/hg/lib/hui.c
- lines changed 16, context: html, text, full: html, text
Bugfix (#7101): Tim found that the BAM UI code was not using ClosestToHome.That caused subtrack config controls to show incorrect values.
Fixed according to Tim's suggestion to do like hgTracks code.
- src/hg/lib/jsHelper.c
- lines changed 10, context: html, text, full: html, text
cleanup per review items from tim
- lines changed 138, context: html, text, full: html, text
use a union in jsonElement to simplify code and eliminate typecasts (per suggestion of angie and tim); rename jsonHash to jsonObject; fix some obsolete comments
- src/hg/lib/tests/annoGratorTester.c
- lines changed 6, context: html, text, full: html, text
ongoing #6152. Added support for variants longer than 1 in CDS.
- lines changed 4, context: html, text, full: html, text
more work on #6152. Now with in-frame deletions!
- src/hg/lib/tests/expected/annoGrator/pgSnpKgDbToGpFx.txt
- lines changed 5, context: html, text, full: html, text
ongoing #6152. Added support for variants longer than 1 in CDS.
- lines changed 7, context: html, text, full: html, text
more work on #6152. Now with in-frame deletions!
- src/hg/lib/variant.c
- lines changed 46, context: html, text, full: html, text
ongoing #6152. Added support for variants longer than 1 in CDS.
- lines changed 21, context: html, text, full: html, text
more work on #6152. Now with in-frame deletions!
- src/hg/lib/web.c
- lines changed 2, context: html, text, full: html, text
Moving a freeMem inside an if where it belongs (according to commentsabout docRoot above, the problem should only manifest in command line mode
when docRoot can be NULL).
- lines changed 9, context: html, text, full: html, text
UI for #6152 (Variant Annotation Tool): position input is now searchedonblur and before we submit the page to execute a query, so that if a position
is not found or has multiple matches, the user is returned to the UI to fix it.
- src/hg/makeDb/doc/canFam3.txt
- lines changed 9, context: html, text, full: html, text
adding cpgIslandExt track
- src/hg/makeDb/doc/ce6.txt
- lines changed 32, context: html, text, full: html, text
makeDoc additions for hg19 mm9 rn4 danRer6 dm3 xentro2 oryLat2 ci2 ce6 sacCer2 via script /hive/data/inside/literature/pubtools/addToMakeDbDoc.sh for publications track
- src/hg/makeDb/doc/choHof1.txt
- lines changed 17, context: html, text, full: html, text
adding cpgIslandExt track
- src/hg/makeDb/doc/chrPic1.txt
- lines changed 9, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 18, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/ci2.txt
- lines changed 32, context: html, text, full: html, text
makeDoc additions for hg19 mm9 rn4 danRer6 dm3 xentro2 oryLat2 ci2 ce6 sacCer2 via script /hive/data/inside/literature/pubtools/addToMakeDbDoc.sh for publications track
- src/hg/makeDb/doc/danRer6.txt
- lines changed 32, context: html, text, full: html, text
makeDoc additions for hg19 mm9 rn4 danRer6 dm3 xentro2 oryLat2 ci2 ce6 sacCer2 via script /hive/data/inside/literature/pubtools/addToMakeDbDoc.sh for publications track
- src/hg/makeDb/doc/dasNov3.txt
- lines changed 10, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 12, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/dipOrd1.txt
- lines changed 14, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 20, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/dm3.txt
- lines changed 32, context: html, text, full: html, text
makeDoc additions for hg19 mm9 rn4 danRer6 dm3 xentro2 oryLat2 ci2 ce6 sacCer2 via script /hive/data/inside/literature/pubtools/addToMakeDbDoc.sh for publications track
- src/hg/makeDb/doc/echTel1.txt
- lines changed 16, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 21, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeRikenCage.release3.notes
- lines changed 2136, context: html, text, full: html, text
Adding in a notes file for Riken Cage
- src/hg/makeDb/doc/encodeDccMm9/wgEncodeCaltechRnaSeq.release1.notes
- src/hg/makeDb/doc/eriEur1.txt
- lines changed 15, context: html, text, full: html, text
adding cpgIslandExt track
- src/hg/makeDb/doc/felCat5.txt
- lines changed 10, context: html, text, full: html, text
adding cpgIslandExt track
- src/hg/makeDb/doc/fr3.txt
- lines changed 3, context: html, text, full: html, text
adding cpgIslandExt track
- src/hg/makeDb/doc/gadMor1.txt
- lines changed 21, context: html, text, full: html, text
adding cpgIslandExt track
- src/hg/makeDb/doc/galGal4.txt
- lines changed 10, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 19, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/hetGla2.txt
- lines changed 9, context: html, text, full: html, text
adding cpgIslandExt track
- src/hg/makeDb/doc/hg19.txt
- lines changed 31, context: html, text, full: html, text
makeDoc additions for hg19 mm9 rn4 danRer6 dm3 xentro2 oryLat2 ci2 ce6 sacCer2 via script /hive/data/inside/literature/pubtools/addToMakeDbDoc.sh for publications track
- src/hg/makeDb/doc/latCha1.txt
- lines changed 10, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 12, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/melUnd1.txt
- lines changed 9, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 17, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/micMur1.txt
- lines changed 11, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 21, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/mm9.txt
- lines changed 32, context: html, text, full: html, text
makeDoc additions for hg19 mm9 rn4 danRer6 dm3 xentro2 oryLat2 ci2 ce6 sacCer2 via script /hive/data/inside/literature/pubtools/addToMakeDbDoc.sh for publications track
- src/hg/makeDb/doc/nomLeu2.txt
- lines changed 9, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 12, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/ochPri2.txt
- lines changed 15, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 21, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/oreNil1.txt
- lines changed 11, context: html, text, full: html, text
adding cpgIslandExt track
- src/hg/makeDb/doc/oreNil2.txt
- lines changed 11, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 19, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/oryLat2.txt
- lines changed 32, context: html, text, full: html, text
makeDoc additions for hg19 mm9 rn4 danRer6 dm3 xentro2 oryLat2 ci2 ce6 sacCer2 via script /hive/data/inside/literature/pubtools/addToMakeDbDoc.sh for publications track
- src/hg/makeDb/doc/otoGar3.txt
- lines changed 11, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 18, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/panTro4.txt
- lines changed 10, context: html, text, full: html, text
adding cpgIslandExt track
- src/hg/makeDb/doc/papHam1.txt
- lines changed 15, context: html, text, full: html, text
adding cpgIslandExt track
- src/hg/makeDb/doc/proCap1.txt
- lines changed 15, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 17, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/pteVam1.txt
- lines changed 10, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 12, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/rheMac3.txt
- lines changed 1, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/rn4.txt
- lines changed 32, context: html, text, full: html, text
makeDoc additions for hg19 mm9 rn4 danRer6 dm3 xentro2 oryLat2 ci2 ce6 sacCer2 via script /hive/data/inside/literature/pubtools/addToMakeDbDoc.sh for publications track
- src/hg/makeDb/doc/rn5.txt
- lines changed 10, context: html, text, full: html, text
adding cpgIslandExt track
- src/hg/makeDb/doc/sacCer2.txt
- lines changed 32, context: html, text, full: html, text
makeDoc additions for hg19 mm9 rn4 danRer6 dm3 xentro2 oryLat2 ci2 ce6 sacCer2 via script /hive/data/inside/literature/pubtools/addToMakeDbDoc.sh for publications track
- src/hg/makeDb/doc/saiBol1.txt
- lines changed 10, context: html, text, full: html, text
adding cpgIslandExt track
- src/hg/makeDb/doc/sorAra1.txt
- lines changed 15, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 18, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/speTri2.txt
- lines changed 11, context: html, text, full: html, text
adding cpgIslandExt track
- src/hg/makeDb/doc/susScr3.txt
- lines changed 10, context: html, text, full: html, text
adding cpgIslandExt track
- src/hg/makeDb/doc/tarSyr1.txt
- lines changed 19, context: html, text, full: html, text
adding cpgIslandExt track
- src/hg/makeDb/doc/triMan1.txt
- lines changed 10, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 21, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/tupBel1.txt
- lines changed 10, context: html, text, full: html, text
adding cpgIslandExt track
- src/hg/makeDb/doc/turTru2.txt
- lines changed 12, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 20, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/vicPac1.txt
- lines changed 15, context: html, text, full: html, text
adding cpgIslandExt track
- lines changed 17, context: html, text, full: html, text
done with genscan track build
- src/hg/makeDb/doc/xenTro2.txt
- lines changed 32, context: html, text, full: html, text
makeDoc additions for hg19 mm9 rn4 danRer6 dm3 xentro2 oryLat2 ci2 ce6 sacCer2 via script /hive/data/inside/literature/pubtools/addToMakeDbDoc.sh for publications track
- src/hg/makeDb/trackDb/baboon/papHam1/description.html
- lines changed 5, context: html, text, full: html, text
added image of olive baboon - the actual species sequenced
- lines changed 7, context: html, text, full: html, text
changed name of image lik and corrected foto source info. added link to baylor project page
- lines changed 1, context: html, text, full: html, text
added s to Science in outlink
- lines changed 1, context: html, text, full: html, text
after noticing that the horse has his name, added baboob name, Casanova
- src/hg/makeDb/trackDb/bushbaby/otoGar1/description.html
- lines changed 2, context: html, text, full: html, text
changed size tags on one bushbaby image and added photo to the other
- src/hg/makeDb/trackDb/bushbaby/otoGar3/description.html
- lines changed 6, context: html, text, full: html, text
changed size tags on one bushbaby image and added photo to the other
- src/hg/makeDb/trackDb/cat/felCat5/description.html
- lines changed 140, context: html, text, full: html, text
added a dir a description.html for felCat5
- src/hg/makeDb/trackDb/cow/bosTau4/description.html
- lines changed 2, context: html, text, full: html, text
made box around cow image full size
- src/hg/makeDb/trackDb/cv/alpha/cv.ra
- lines changed 6, context: html, text, full: html, text
Added stanza for Harvard control. Redmine #4486.
- lines changed 15, context: html, text, full: html, text
Adding labels to blood cells that have the same naming schema
- lines changed 1, context: html, text, full: html, text
Fixing draw ID for CD20+ cell line
- lines changed 24, context: html, text, full: html, text
Removing CD20+_RO01746 from CV
- lines changed 8, context: html, text, full: html, text
Adding Monocytes-CD14+_RO01826 and fixing a few inconsistencies
- lines changed 26, context: html, text, full: html, text
Removing term B_cells_CD20+, undeprecated CD20+, labeled CD20+ as B_cells_CD20+, changed childOf term for children to CD20+ in CV
- lines changed 2, context: html, text, full: html, text
Adding a couple labels to CV
- lines changed 40, context: html, text, full: html, text
Fixing protocol names for BioChain samples
- lines changed 1, context: html, text, full: html, text
Correcting vendorId in cv
- lines changed 2, context: html, text, full: html, text
Fixed naming of Provisional tags.
- lines changed 1, context: html, text, full: html, text
Fixed spelling of Provisional.
- lines changed 2, context: html, text, full: html, text
Changing the + and - in the label to Plus an Minus
- lines changed 32, context: html, text, full: html, text
Added protocols for CSHL lab.
- src/hg/makeDb/trackDb/cv/beta/cv.ra
- lines changed 204, context: html, text, full: html, text
Moving alpha cv to beta
- src/hg/makeDb/trackDb/cv/public/cv.ra
- lines changed 129, context: html, text, full: html, text
Approved changes in beta/cv.ra. Redmine #7723.
- src/hg/makeDb/trackDb/dog/canFam1/description.html
- lines changed 2, context: html, text, full: html, text
adjusted box to make room for full image
- src/hg/makeDb/trackDb/dog/canFam2/description.html
- lines changed 2, context: html, text, full: html, text
adjusted box to make room for full image
- src/hg/makeDb/trackDb/dolphin/turTru1/description.html
- lines changed 6, context: html, text, full: html, text
added dolphin photo to both assemblies
- lines changed 2, context: html, text, full: html, text
changed wording on image license
- src/hg/makeDb/trackDb/dolphin/turTru2/description.html
- lines changed 6, context: html, text, full: html, text
added dolphin photo to both assemblies
- lines changed 2, context: html, text, full: html, text
changed wording on image license
- src/hg/makeDb/trackDb/gibbon/nomLeu1/description.html
- lines changed 2, context: html, text, full: html, text
changed size tags on one gibbon image and added photo to the other
- lines changed 1, context: html, text, full: html, text
fixed size bug around image
- src/hg/makeDb/trackDb/gibbon/nomLeu2/description.html
- lines changed 5, context: html, text, full: html, text
changed size tags on one gibbon image and added photo to the other
- src/hg/makeDb/trackDb/guineaPig/cavPor3/description.html
- lines changed 2, context: html, text, full: html, text
fixed bounding box size around image and added height tag
- src/hg/makeDb/trackDb/hedgehog/eriEur1/description.html
- lines changed 2, context: html, text, full: html, text
changed wording on image license
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.html
- lines changed 0, context: html, text, full: html, text
Made change suggested by Katrina in code review (redmine #7738 note 4)
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
- lines changed 4158, context: html, text, full: html, text
Cleaning up the labels and the metaDb for this track, dropping redundant information in the metaData and dropping donor ids out of the long labels, removing the lab rep dcc rep thing in place of rank
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra
- lines changed 80, context: html, text, full: html, text
Removing restriction dates due to publication
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
- lines changed 6, context: html, text, full: html, text
restored the object type after some discoveries were made about how the files were uploaded
- lines changed 2, context: html, text, full: html, text
added series accession number to RikenCage
- lines changed 313, context: html, text, full: html, text
added in seqPlayform where known
- lines changed 45, context: html, text, full: html, text
missed this metaDAta somehow
- lines changed 29, context: html, text, full: html, text
Cleaning up Riken to get rid of Generation 0 and to sort out the weird HepG2 TssHmm issue that originated in submission 5610
- lines changed 23, context: html, text, full: html, text
Fixing the bioRep and the expId for the new data
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
- lines changed 8, context: html, text, full: html, text
Added md5sum's for files. Redmine #4486.
- lines changed 276, context: html, text, full: html, text
Updated names for objects to use Harvard Control. Also added Harvard Control to track. Redmine #4486.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra
- lines changed 2, context: html, text, full: html, text
adding treatment to expVars
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeRikenCage.ra
- lines changed 10195, context: html, text, full: html, text
Staging RIKEN CAGE Loc (Release 3) on beta (redmine #6579)
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra
- lines changed 1, context: html, text, full: html, text
expand list of chroms for vegaGene redmine 7403
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
- lines changed 2, context: html, text, full: html, text
Staging RIKEN CAGE Loc (Release 3) on beta (redmine #6579)
- src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.html
- lines changed 38, context: html, text, full: html, text
Added new 'Publications' section with specified citations (redmine #7514)
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.html
- lines changed 9, context: html, text, full: html, text
Added new 'Publications' section with specified citations (redmine #7514)
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release2.html
- lines changed 9, context: html, text, full: html, text
Added new 'Publications' section with specified citations (redmine #7514)
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release3.html
- lines changed 9, context: html, text, full: html, text
Added new 'Publications' section with specified citations (redmine #7514)
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.html
- lines changed 27, context: html, text, full: html, text
Added new 'Publications' section with specified citations (redmine #7514)
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.html
- lines changed 27, context: html, text, full: html, text
Added new 'Publications' section with specified citations (redmine #7514)
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.ra
- lines changed 1361, context: html, text, full: html, text
Cleaning up the labels and the metaDb for this track, dropping redundant information in the metaData and dropping donor ids out of the long labels, removing the lab rep dcc rep thing in place of rank
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.html
- lines changed 19, context: html, text, full: html, text
Added new 'Publications' section with specified citations (redmine #7514)
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.html
- lines changed 82, context: html, text, full: html, text
Added new 'Publications' section with specified citations (redmine #7514)
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.release2.html
- lines changed 82, context: html, text, full: html, text
Added new 'Publications' section with specified citations (redmine #7514)
- src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra
- lines changed 4, context: html, text, full: html, text
Adding allButtonPair to multiWigs.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.html
- lines changed 7, context: html, text, full: html, text
Cleaning up Riken to get rid of Generation 0 and to sort out the weird HepG2 TssHmm issue that originated in submission 5610
- lines changed 7, context: html, text, full: html, text
Changing some methods text and the view limits according to tha approval call
- lines changed 2, context: html, text, full: html, text
more html fixes for riken, this time capitalization
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.ra
- lines changed 1, context: html, text, full: html, text
reverting an error made earlier
- lines changed 137, context: html, text, full: html, text
Cleaning up Riken to get rid of Generation 0 and to sort out the weird HepG2 TssHmm issue that originated in submission 5610
- lines changed 2, context: html, text, full: html, text
Changing some methods text and the view limits according to tha approval call
- lines changed 115, context: html, text, full: html, text
trackDb fixes and promotes tier 2.5 cell lines
- lines changed 323, context: html, text, full: html, text
Fixing Ticket 6579 note 30
- lines changed 250, context: html, text, full: html, text
Fixing Ticket 6579 note 30
- lines changed 1, context: html, text, full: html, text
removing a bad search and replace change
- lines changed 0, context: html, text, full: html, text
removing space that was causing default to not be checked
- lines changed 1, context: html, text, full: html, text
removing another bad search and replace
- lines changed 16, context: html, text, full: html, text
changed alignments to off, and removed replicate from fileSortOrder
- lines changed 1, context: html, text, full: html, text
changed max window on minus to be the same as plus
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release2.html
- lines changed 23, context: html, text, full: html, text
Updated publications sections. Redmine #4486.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release2.ra
- lines changed 34, context: html, text, full: html, text
Fixed matrix labels. Redmine #4486.
- lines changed 58, context: html, text, full: html, text
Updated names for objects to use Harvard Control. Also added Harvard Control to track. Redmine #4486.
- src/hg/makeDb/trackDb/makefile
- lines changed 1, context: html, text, full: html, text
vicVic1 is actually vicPac1
- src/hg/makeDb/trackDb/manatee/triMan1/description.html
- lines changed 5, context: html, text, full: html, text
added credit for manatee photo
- src/hg/makeDb/trackDb/megabat/pteVam1/description.html
- lines changed 6, context: html, text, full: html, text
adding picture for megabat
- lines changed 2, context: html, text, full: html, text
changed wording on image license
- src/hg/makeDb/trackDb/microbat/myoLuc1/description.html
- lines changed 2, context: html, text, full: html, text
added dimensions around image
- src/hg/makeDb/trackDb/moleRat/hetGla1/description.html
- lines changed 1, context: html, text, full: html, text
fixed one and add other image stuff for naked mole rat
- src/hg/makeDb/trackDb/moleRat/hetGla2/description.html
- lines changed 8, context: html, text, full: html, text
fixed one and add other image stuff for naked mole rat
- src/hg/makeDb/trackDb/mouse/ikmc.html
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
- lines changed 9, context: html, text, full: html, text
update expId for Signal subtracks
- lines changed 119, context: html, text, full: html, text
correct date due to multiple resubmission
- lines changed 40, context: html, text, full: html, text
removed commented out date entries, as it seems to cause KeyErr when running MkChangeNotes
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
- lines changed 35, context: html, text, full: html, text
Moved Junctions from downloadOnly to displayed. Redmine #7089.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuHistone.ra
- lines changed 3, context: html, text, full: html, text
Fixed Peak file. Redmine #6703.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra
- lines changed 305, context: html, text, full: html, text
Fixed metaDb to remove old file names.
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/makefile
- lines changed 1, context: html, text, full: html, text
Staging Caltech RNA-Seq (Release 1) on beta (redmine #4156)
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/wgEncodeCaltechRnaSeq.ra
- lines changed 577, context: html, text, full: html, text
Staging Caltech RNA-Seq (Release 1) on beta (redmine #4156)
- lines changed 1, context: html, text, full: html, text
Ruihua added freeze date to one entry (redmine #4156)
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/wgEncodePsuHistone.ra
- lines changed 3, context: html, text, full: html, text
Venkat fixed peak file (redmine #6703)
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/public/makefile
- lines changed 1, context: html, text, full: html, text
Releasing PSU Histone (Release 1) to RR (redmine #111)
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/public/wgEncodePsuHistone.ra
- lines changed 8044, context: html, text, full: html, text
Releasing PSU Histone (Release 1) to RR (redmine #111)
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra
- lines changed 1, context: html, text, full: html, text
Staging Caltech RNA-Seq (Release 1) on beta (redmine #4156)
- lines changed 2, context: html, text, full: html, text
Moved Junctions from downloadOnly to displayed. Redmine #7089.
- lines changed 1, context: html, text, full: html, text
Releasing PSU Histone (Release 1) to RR (redmine #111)
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechRnaSeq.html
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechRnaSeq.release1.html
- lines changed 55, context: html, text, full: html, text
new description sent by Georgi
- lines changed 24, context: html, text, full: html, text
correct reference format, the one form Georgi is old
- lines changed 3, context: html, text, full: html, text
Removed ms-dos CRLF characters.
- lines changed 7, context: html, text, full: html, text
fix dispaly convention and view selectio label
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechRnaSeq.release1.ra
- lines changed 5, context: html, text, full: html, text
fix typo, remove Raw from Raw Signal
- lines changed 6, context: html, text, full: html, text
fix differentiation time points in long label so to be consistent with caltechHistone
- lines changed 3, context: html, text, full: html, text
add view column to sort list
- lines changed 1, context: html, text, full: html, text
fix dispaly convention and view selectio label
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.release2.ra
- lines changed 162, context: html, text, full: html, text
Moved Junctions from downloadOnly to displayed. Redmine #7089.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.html
- lines changed 9, context: html, text, full: html, text
Added new 'Publications' section with specified citations (redmine #7514)
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.release2.html
- lines changed 36, context: html, text, full: html, text
Added new 'Publications' section with specified citations (redmine #7514)
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.release2.ra
- lines changed 1, context: html, text, full: html, text
Fixed Peak file. Redmine #6703.
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.html
- lines changed 9, context: html, text, full: html, text
Added new 'Publications' section with specified citations (redmine #7514)
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.release2.html
- lines changed 15, context: html, text, full: html, text
Added new 'Publications' section with specified citations (redmine #7514)
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.release3.ra
- src/hg/makeDb/trackDb/mouseLemur/micMur1/description.html
- lines changed 1, context: html, text, full: html, text
fixed bounding box size around image
- src/hg/makeDb/trackDb/pika/ochPri2/description.html
- lines changed 2, context: html, text, full: html, text
changed wording on image license
- src/hg/makeDb/trackDb/pubs.html
- lines changed 16, context: html, text, full: html, text
Made several grammar corrections and edited for clarity. More edits needed.
- lines changed 13, context: html, text, full: html, text
small corrections to pubs html page after QA
- src/hg/makeDb/trackDb/rockHyrax/proCap1/description.html
- lines changed 6, context: html, text, full: html, text
added photo credit for rock hyrax
- src/hg/makeDb/trackDb/sheep/oviAri1/description.html
- lines changed 2, context: html, text, full: html, text
fixed bounding box size around image
- src/hg/makeDb/trackDb/shrew/sorAra1/description.html
- lines changed 6, context: html, text, full: html, text
added photo to shrew description
- lines changed 2, context: html, text, full: html, text
changed wording on image license
- src/hg/makeDb/trackDb/squirrel/speTri1/description.html
- lines changed 7, context: html, text, full: html, text
added images for both squirrel assemblies
- src/hg/makeDb/trackDb/squirrel/speTri2/description.html
- lines changed 7, context: html, text, full: html, text
added images for both squirrel assemblies
- src/hg/makeDb/trackDb/tarsier/tarSyr1/description.html
- lines changed 7, context: html, text, full: html, text
adding tarsier photo from wikipedia
- src/hg/makeDb/trackDb/tasmanianDevil/sarHar1/description.html
- lines changed 1, context: html, text, full: html, text
changed name of photo contributor
- src/hg/makeDb/trackDb/tenrec/echTel1/description.html
- lines changed 1, context: html, text, full: html, text
adjusted bounding box to make room for full image
- src/hg/makeDb/trackDb/trackDb.ra
- lines changed 6, context: html, text, full: html, text
Removed release tags for Max's Publications track as I'm staging on beta and pushing to RR.
- src/hg/makeDb/trackDb/transMap.html
- lines changed 3, context: html, text, full: html, text
Changed journal references to point to journal pages rather than NCBI as suggested by Katrina in code review (redmine #7738 notes 5,6)
- src/hg/makeDb/trackDb/transMapAlnMRna.html
- lines changed 3, context: html, text, full: html, text
Changed journal references to point to journal pages rather than NCBI as suggested by Katrina in code review (redmine #7738 notes 5,6)
- src/hg/makeDb/trackDb/transMapAlnRefSeq.html
- lines changed 3, context: html, text, full: html, text
Changed journal references to point to journal pages rather than NCBI as suggested by Katrina in code review (redmine #7738 notes 5,6)
- src/hg/makeDb/trackDb/transMapAlnSplicedEst.html
- lines changed 3, context: html, text, full: html, text
Changed journal references to point to journal pages rather than NCBI as suggested by Katrina in code review (redmine #7738 notes 5,6)
- src/hg/makeDb/trackDb/transMapAlnUcscGenes.html
- lines changed 3, context: html, text, full: html, text
Changed journal references to point to journal pages rather than NCBI as suggested by Katrina in code review (redmine #7738 notes 5,6)
- src/hg/makeDb/trackDb/treeShrew/tupBel1/description.html
- lines changed 1, context: html, text, full: html, text
fixed bounding box size around image
- src/hg/mouseStuff/netFilter/netFilter.c
- lines changed 6, context: html, text, full: html, text
added -maxAli option to netFilter
- src/hg/oneShot/encodeExpToCvDb/encodeExpToCvDb.c
- lines changed 9, context: html, text, full: html, text
Making optional fields ok with null values (seems to be required for drop-down editing of foreign keys, blank ok not enough. Making md5sum tolerate longer strings since can be comma separated currently.
- src/hg/utils/automation/Encode.pm
- lines changed 1, context: html, text, full: html, text
removed deprecated types from extended types list
- lines changed 1, context: html, text, full: html, text
shouldnt have removed gappedPeak
- lines changed 5, context: html, text, full: html, text
Merge branch 'master' into newValidateFiles
- src/hg/utils/automation/doCpgIslands.pl
- lines changed 1, context: html, text, full: html, text
fix error in using head in a pipe in csh
- src/hg/utils/automation/doGenscan.pl
- lines changed 354, context: html, text, full: html, text
similar to doCpgIslands.pl and more robust
- lines changed 19, context: html, text, full: html, text
properly protect each step from repeats or missing previous step
- src/hg/utils/automation/grcIncidentUpdate.sh
- lines changed 111, context: html, text, full: html, text
present copy of update.sh used by grcIncidentDb.pl
- src/hg/utils/automation/grcRunIncidentUpdate.sh
- lines changed 45, context: html, text, full: html, text
current copy of runUpdate.sh used by grcIncidentDb.pl
- src/hg/utils/automation/ncbiIncidentDb.pl
- lines changed 303, context: html, text, full: html, text
now taken care of in grcIncidentDb.pl
- src/hg/utils/automation/ncbiIncidentUpdate.sh
- lines changed 83, context: html, text, full: html, text
now contained in grcRunIncidentUpdate.sh and grcIncidentUpdate.sh
- src/hg/utils/automation/ncbiRunIncidentUpdate.sh
- lines changed 30, context: html, text, full: html, text
now contained in grcRunIncidentUpdate.sh and grcIncidentUpdate.sh
- src/hg/utils/phyloTrees/60way.nh
- src/hg/utils/phyloTrees/placentals.txt
- lines changed 30, context: html, text, full: html, text
updating comments about which is what
- src/hg/utils/phyloTrees/vertebrates.txt
- lines changed 26, context: html, text, full: html, text
adding melUnd1 lepOcu1 hapBur1 neoBri1 mayZeb1 punNye1 xipMac1 oreNil1
- src/inc/asParse.h
- lines changed 4, context: html, text, full: html, text
Feature #6152 (Variant Annotation Tool): Added region type and positioninputs to UI -- and it actually executes some queries now!
- src/inc/options.h
- lines changed 1, context: html, text, full: html, text
options.h was missing its #define OPTIONS_H -- apparently my codewas the first so far to have multiple includes of options.h. :)
- src/kehayden/alphaChain/DYZ3_alphaChain.txt
- lines changed 966, context: html, text, full: html, text
update alphaChain stdin files
- src/kehayden/alphaChain/alphaChain.c
- lines changed 72, context: html, text, full: html, text
updated alphaChain.c normalized counter
- lines changed 45, context: html, text, full: html, text
consolidated alphaChain between kent libraries, with parent
- lines changed 3, context: html, text, full: html, text
Tweaked comment at head of file.
- lines changed 84, context: html, text, full: html, text
Adding in dummy nodes to help deal with missing data from reads not being infinite.
- lines changed 83, context: html, text, full: html, text
Fixed a bug in the useCounts from double counting once per line of input. Starting to implement the output, but it's still rough and buggy.
- src/kehayden/alphaChain/doIt
- lines changed 1, context: html, text, full: html, text
update alphaChain stdin files
- src/kehayden/alphaChain/makefile
- lines changed 18, context: html, text, full: html, text
update alphaChain stdin files
- src/lib/asParse.c
- lines changed 33, context: html, text, full: html, text
Feature #6152 (Variant Annotation Tool): Added region type and positioninputs to UI -- and it actually executes some queries now!
- src/lib/basicBed.c
- src/lib/common.c
- lines changed 1, context: html, text, full: html, text
more work on #6152. Now with in-frame deletions!
- src/lib/linefile.c
- src/product/scripts/allDatabaseUpdate.sh
- lines changed 1, context: html, text, full: html, text
using bash instead of just sh so the include of browserEnvironment.txt will work without a full path
- src/product/scripts/fetchFullGbdb.sh
- lines changed 1, context: html, text, full: html, text
using bash instead of just sh so the include of browserEnvironment.txt will work without a full path
- src/product/scripts/fetchFullGoldenPath.sh
- lines changed 1, context: html, text, full: html, text
using bash instead of just sh so the include of browserEnvironment.txt will work without a full path
- src/product/scripts/fetchMinimalGbdb.sh
- lines changed 1, context: html, text, full: html, text
using bash instead of just sh so the include of browserEnvironment.txt will work without a full path
- src/product/scripts/fetchMinimalGoldenPath.sh
- lines changed 1, context: html, text, full: html, text
using bash instead of just sh so the include of browserEnvironment.txt will work without a full path
- src/product/scripts/kentSrcUpdate.sh
- lines changed 1, context: html, text, full: html, text
using bash instead of just sh so the include of browserEnvironment.txt will work without a full path
- src/product/scripts/loadDb.sh
- lines changed 1, context: html, text, full: html, text
using bash instead of just sh so the include of browserEnvironment.txt will work without a full path
- src/product/scripts/loadUpdateGoldenPath.sh
- lines changed 1, context: html, text, full: html, text
using bash instead of just sh so the include of browserEnvironment.txt will work without a full path
- src/product/scripts/tagGoldenPath.sh
- lines changed 1, context: html, text, full: html, text
using bash instead of just sh so the include of browserEnvironment.txt will work without a full path
- src/product/scripts/updateHtml.sh
- lines changed 1, context: html, text, full: html, text
using bash instead of just sh so the include of browserEnvironment.txt will work without a full path
- src/utils/bedToBigBed/bedToBigBed.c
- src/utils/qa/weeklybld/buildEnv.csh
- src/utils/qa/weeklybld/buildHgCentralSql.csh
- lines changed 1, context: html, text, full: html, text
The following tables were added to the hgcentral dump to sql... gbMembers, namedSessions. This was for redmine 6845.
- src/utils/qa/weeklybld/buildZip.csh
- lines changed 2, context: html, text, full: html, text
Building zips was still hanging.
- lines changed: 37583
- files changed: 385