All File Changes
v426_preview2 to v426_base (2022-01-24 to 2022-01-31) v426
Show details
- src/hg/cgilib/ensFace.c
- lines changed 1, context: html, text, full: html, text
919620af4ae7a9d4d901d445a04e844324b89f9e Mon Jan 24 22:12:33 2022 -0800
Fixing compatibility for MariaDb 10.6 which has a new keyword "offset". refs #28799
- src/hg/hgCustom/hgCustom.c
- lines changed 2, context: html, text, full: html, text
9d2c9bfd7841afe2fe70852f9f462238c36c64f2 Wed Jan 26 11:53:21 2022 -0800
call chromAliasSetup at start up in hgCustom
- lines changed 4, context: html, text, full: html, text
23b76bd39155279b8cf1eb6df02cd12cdef6b816 Thu Jan 27 15:25:33 2022 -0800
Updating popup message, refs #8155
- lines changed 2, context: html, text, full: html, text
a3b58f9c8791d7fe9f41014ca382aae78b53dd4b Fri Jan 28 00:25:10 2022 -0800
adding more file extensions to binary files warning on hgCustom, refs #8155
- src/hg/hgTables/bigBed.c
- lines changed 7, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/hgTables/bigWig.c
- lines changed 4, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/hgTracks/barChartTrack.c
- lines changed 1, context: html, text, full: html, text
d59d6cbe4dfc0ba40588132b1776cb2038f5216b Wed Jan 26 17:29:35 2022 -0800
Add missing hReplaceGbdb calls to various barChart functions, refs #28828
- src/hg/hgTracks/bigBedTrack.c
- lines changed 1, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/hgTracks/bigWigTrack.c
- lines changed 1, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/hgTracks/chainTrack.c
- lines changed 1, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/hgTracks/extTools.ra
- lines changed 9, context: html, text, full: html, text
c372ad07936e4eb413fc8ca45f389535bbbfa82d Thu Jan 27 06:53:09 2022 -0800
updating primer3 URL, no redmine, email to QA
- src/hg/hgTracks/hgTracks.c
- lines changed 2, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/hgTracks/simpleTracks.c
- lines changed 1, context: html, text, full: html, text
919620af4ae7a9d4d901d445a04e844324b89f9e Mon Jan 24 22:12:33 2022 -0800
Fixing compatibility for MariaDb 10.6 which has a new keyword "offset". refs #28799
- src/hg/hgTracks/vcfTrack.c
- lines changed 1, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/hgTracks/wigMafTrack.c
- lines changed 3, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/hgc/barChartClick.c
- lines changed 1, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- lines changed 6, context: html, text, full: html, text
d59d6cbe4dfc0ba40588132b1776cb2038f5216b Wed Jan 26 17:29:35 2022 -0800
Add missing hReplaceGbdb calls to various barChart functions, refs #28828
- src/hg/hgc/bigBedClick.c
- lines changed 1, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/hgc/bigDbSnpClick.c
- lines changed 1, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/hgc/bigRmskClick.c
- lines changed 1, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/hgc/clinvarSubLolly.c
- lines changed 2, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/hgc/encodeClick.c
- lines changed 1, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/hgc/hgc.c
- lines changed 6, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- lines changed 1, context: html, text, full: html, text
5f032f4769aca06fedde822c0ccff089321369a4 Thu Jan 27 15:46:04 2022 -0800
stop passing in NULL for database in getChromAlias()
- src/hg/hgc/lrgClick.c
- lines changed 1, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/hgc/mafClick.c
- lines changed 1, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/hgc/transMapClick.c
- lines changed 1, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/hgc/wiggleClick.c
- lines changed 1, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/htdocs/training/index.html
- lines changed 13, context: html, text, full: html, text
b585e2d2aa40f9c31fa84919db9040bfa1c3ce9e Wed Jan 26 16:04:59 2022 -0800
removing completed workshops PAG and UCLA, moving ASHG and Childrens Mercy into active list
- src/hg/inc/chainNetDbLoad.h
- lines changed 1, context: html, text, full: html, text
5f032f4769aca06fedde822c0ccff089321369a4 Thu Jan 27 15:46:04 2022 -0800
stop passing in NULL for database in getChromAlias()
- src/hg/inc/chromAlias.h
- lines changed 4, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/inc/trackHub.h
- lines changed 3, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/inc/versionInfo.h
- lines changed 1, context: html, text, full: html, text
414610df564cd8055f16956e9fbbde4488b3387c Mon Jan 31 16:45:33 2022 -0800
New version number v426
- src/hg/lib/barChartUi.c
- lines changed 1, context: html, text, full: html, text
d59d6cbe4dfc0ba40588132b1776cb2038f5216b Wed Jan 26 17:29:35 2022 -0800
Add missing hReplaceGbdb calls to various barChart functions, refs #28828
- src/hg/lib/chainNetDbLoad.c
- lines changed 2, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- lines changed 3, context: html, text, full: html, text
5f032f4769aca06fedde822c0ccff089321369a4 Thu Jan 27 15:46:04 2022 -0800
stop passing in NULL for database in getChromAlias()
- src/hg/lib/chromAlias.c
- lines changed 126, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- lines changed 3, context: html, text, full: html, text
7f2f65b61d5546d8a875fc00df6a6d43a9267e25 Wed Jan 26 11:59:53 2022 -0800
do a null check for database in chromAlias setup
- lines changed 9, context: html, text, full: html, text
70f5ad4d3afb51df8cd4c1b40dd75a6a0d0ee915 Sat Jan 29 08:13:53 2022 -0800
require that chromAliasSetup be called at init time to avoid potential
thread race conditions
- lines changed 3, context: html, text, full: html, text
cce51ca0744763b5d358c73cf6190d7a6ea29399 Sun Jan 30 07:38:58 2022 -0800
oops ... added an errant lineFileClose on the last checkin
- src/hg/lib/customFactory.c
- lines changed 2, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- lines changed 4, context: html, text, full: html, text
5f032f4769aca06fedde822c0ccff089321369a4 Thu Jan 27 15:46:04 2022 -0800
stop passing in NULL for database in getChromAlias()
- lines changed 2, context: html, text, full: html, text
815bce4cc505b607c7178d06d45f52d864aa0584 Fri Jan 28 09:00:34 2022 -0800
fix memory access problem in custom maf support
- src/hg/lib/ensemblLift.sql
- lines changed 1, context: html, text, full: html, text
919620af4ae7a9d4d901d445a04e844324b89f9e Mon Jan 24 22:12:33 2022 -0800
Fixing compatibility for MariaDb 10.6 which has a new keyword "offset". refs #28799
- src/hg/lib/hdb.c
- lines changed 41, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/lib/hgHgvs.c
- lines changed 1, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/lib/scoredRef.c
- lines changed 1, context: html, text, full: html, text
919620af4ae7a9d4d901d445a04e844324b89f9e Mon Jan 24 22:12:33 2022 -0800
Fixing compatibility for MariaDb 10.6 which has a new keyword "offset". refs #28799
- src/hg/lib/scoredRef.sql
- lines changed 1, context: html, text, full: html, text
919620af4ae7a9d4d901d445a04e844324b89f9e Mon Jan 24 22:12:33 2022 -0800
Fixing compatibility for MariaDb 10.6 which has a new keyword "offset". refs #28799
- src/hg/lib/tests/customTrackTester.c
- lines changed 2, context: html, text, full: html, text
70f5ad4d3afb51df8cd4c1b40dd75a6a0d0ee915 Sat Jan 29 08:13:53 2022 -0800
require that chromAliasSetup be called at init time to avoid potential
thread race conditions
- src/hg/lib/tests/hgvsTester.c
- lines changed 2, context: html, text, full: html, text
70f5ad4d3afb51df8cd4c1b40dd75a6a0d0ee915 Sat Jan 29 08:13:53 2022 -0800
require that chromAliasSetup be called at init time to avoid potential
thread race conditions
- src/hg/lib/trackHub.c
- lines changed 81, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/hg/lib/vax004AaCons.sql
- lines changed 1, context: html, text, full: html, text
ecb35e7050f51987983e97ec6566250f252894d6 Thu Jan 27 23:50:02 2022 -0800
fix a few more sql files that have the field name offset which became a keyword in MariaDb 10.6. refs #28799
- src/hg/lib/vax004AaMaf.sql
- lines changed 1, context: html, text, full: html, text
ecb35e7050f51987983e97ec6566250f252894d6 Thu Jan 27 23:50:02 2022 -0800
fix a few more sql files that have the field name offset which became a keyword in MariaDb 10.6. refs #28799
- src/hg/lib/vax004Cons.sql
- lines changed 1, context: html, text, full: html, text
ecb35e7050f51987983e97ec6566250f252894d6 Thu Jan 27 23:50:02 2022 -0800
fix a few more sql files that have the field name offset which became a keyword in MariaDb 10.6. refs #28799
- src/hg/lib/vax004Maf.sql
- lines changed 1, context: html, text, full: html, text
ecb35e7050f51987983e97ec6566250f252894d6 Thu Jan 27 23:50:02 2022 -0800
fix a few more sql files that have the field name offset which became a keyword in MariaDb 10.6. refs #28799
- src/hg/lib/wiggle.sql
- lines changed 1, context: html, text, full: html, text
919620af4ae7a9d4d901d445a04e844324b89f9e Mon Jan 24 22:12:33 2022 -0800
Fixing compatibility for MariaDb 10.6 which has a new keyword "offset". refs #28799
- src/hg/makeDb/doc/asmHubs/lastzRuns.txt
- lines changed 108, context: html, text, full: html, text
4961f406b518a415fdc2de506c97a940bf915aca Mon Jan 31 15:56:15 2022 -0800
mummichog GCF_011125445.2 vs. mummichog GCF_000826765.1 lastz/chain/net run for user, refs #28365
- src/hg/makeDb/doc/hg19.gencode.txt
- lines changed 27, context: html, text, full: html, text
e0dcc4f87e4051aa6094860e0f2a9536e90c97c9 Thu Jan 27 18:02:39 2022 -0800
import of GENCODE V40lift37 pre-release
- src/hg/makeDb/doc/hg38/gencode.txt
- lines changed 35, context: html, text, full: html, text
7f3a7738bd88d2762069a28e9ee35039fa915f48 Wed Jan 26 07:28:30 2022 -0800
import of GENCODE V40 pre-release
- src/hg/makeDb/doc/mm39/gencode.txt
- lines changed 33, context: html, text, full: html, text
07942970a19230fee2cbb6bf8ae1c15427533c66 Wed Jan 26 08:53:49 2022 -0800
loaded GENCODE VM29 pre-release
- lines changed 2, context: html, text, full: html, text
3e26e9f7be9e99c947ab28385336feef14ee348b Wed Jan 26 08:55:33 2022 -0800
loaded GENCODE VM29 pre-release
- src/hg/makeDb/outside/gencode/bin/buildGencodeToUcscLift
- lines changed 2, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/bin/gencodeBackMapMetadataIds
- lines changed 1, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- lines changed 36, context: html, text, full: html, text
e0dcc4f87e4051aa6094860e0f2a9536e90c97c9 Thu Jan 27 18:02:39 2022 -0800
import of GENCODE V40lift37 pre-release
- src/hg/makeDb/outside/gencode/bin/gencodeGenerateTrackDbs
- lines changed 37, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/bin/gencodeGxfToAttrs
- lines changed 62, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/bin/gencodeGxfToGenePred
- lines changed 5, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/bin/gencodeMakeAttrs
- lines changed 87, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/bin/gencodeMakeTracks
- lines changed 67, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/bin/gencodePolyaGxfToGenePred
- lines changed 54, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/gencodeLoad.mk
- lines changed 9, context: html, text, full: html, text
7f3a7738bd88d2762069a28e9ee35039fa915f48 Wed Jan 26 07:28:30 2022 -0800
import of GENCODE V40 pre-release
- lines changed 2, context: html, text, full: html, text
07942970a19230fee2cbb6bf8ae1c15427533c66 Wed Jan 26 08:53:49 2022 -0800
loaded GENCODE VM29 pre-release
- lines changed 23, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- lines changed 3, context: html, text, full: html, text
e0dcc4f87e4051aa6094860e0f2a9536e90c97c9 Thu Jan 27 18:02:39 2022 -0800
import of GENCODE V40lift37 pre-release
- src/hg/makeDb/outside/gencode/lib/gencode/biotypes.py
- lines changed 13, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/lib/gencode/gencodeGenes.py
- lines changed 607, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/lib/gencode/gencodeProcess.py
- lines changed 6, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/lib/gencode/gencodeTags.py
- lines changed 88, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsPseudoGff3Tests.attrs
- lines changed 2, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsPseudoGff3Tests.tags
- lines changed 4, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsPseudoGff3Tests.tsl
- lines changed 2, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsPseudoGff3Tests.tsv
- lines changed 3, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsSet1GtfTest.attrs
- lines changed 54, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsSet1GtfTest.tags
- lines changed 40, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsSet1GtfTest.tsl
- lines changed 54, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsSet1GtfTest.tsv
- lines changed 83, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsTagGff3Tests.attrs
- lines changed 16, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsTagGff3Tests.tags
- lines changed 58, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsTagGff3Tests.tsl
- lines changed 16, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsTagGff3Tests.tsv
- lines changed 17, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsTagGtfTests.attrs
- lines changed 16, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsTagGtfTests.tags
- lines changed 58, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsTagGtfTests.tsl
- lines changed 16, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsTagGtfTests.tsv
- lines changed 17, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV19GtfTest.attrs
- lines changed 5, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV19GtfTest.tags
- lines changed 4, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV19GtfTest.tsl
- lines changed 5, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV19GtfTest.tsv
- lines changed 6, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV21Gff3Test.attrs
- lines changed 117, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV21Gff3Test.tags
- lines changed 123, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV21Gff3Test.tsl
- lines changed 117, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV21Gff3Test.tsv
- lines changed 118, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV21GtfTest.attrs
- lines changed 117, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV21GtfTest.tags
- lines changed 123, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV21GtfTest.tsl
- lines changed 117, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV21GtfTest.tsv
- lines changed 118, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV27ParGff3Test.attrs
- lines changed 15, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV27ParGff3Test.tags
- lines changed 54, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV27ParGff3Test.tsl
- lines changed 15, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV27ParGff3Test.tsv
- lines changed 16, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV27ParGtfTest.attrs
- lines changed 15, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV27ParGtfTest.tags
- lines changed 54, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV27ParGtfTest.tsl
- lines changed 15, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/attrsV27ParGtfTest.tsv
- lines changed 16, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/badMappedErrorsHs38Test.out
- lines changed 5, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/buildGencodeToUcscLiftHs37Test.chain
- lines changed 1959, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/buildGencodeToUcscLiftHs38Test.chain
- lines changed 4659, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/buildGencodeToUcscLiftMm38Test.chain
- lines changed 1552, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/makeAttrsTest.attrs.tab
- lines changed 82, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/makeAttrsTest.tags.tab
- lines changed 191, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/makeAttrsTest.tsl.tab
- lines changed 82, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/makeTracksBasicTest.gp
- lines changed 26, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/makeTracksCompTest.gp
- lines changed 64, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/makeTracksPseudoTest.gp
- lines changed 18, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/ployAGpTest.gp
- lines changed 43, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/set1AnnotTest.gp
- lines changed 120, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/ummappingWarnHs38Test.out
- lines changed 1, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/expected/ummappingWarnHs38Test.unmapped.gp
- lines changed 6, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/input/GCF_000001405.25_GRCh37.p13_assembly_report.txt
- lines changed 333, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/input/GCF_000001405.39_GRCh38.p13_assembly_report.txt
- lines changed 703, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/input/GCF_000001635.26_GRCm38.p6_assembly_report.txt
- lines changed 282, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/input/mappingErrorsHs38.gtf
- lines changed 36, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/input/missingSeqsHs38.gtf
- lines changed 36, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/input/polyA.gff3
- lines changed 50, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/input/set1.gff3
- lines changed 931, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/input/set1.gtf
- lines changed 1524, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/outside/gencode/tests/makefile
- lines changed 106, context: html, text, full: html, text
7b9d4ae382ad4ef6f30ea743d518543b25da87a7 Thu Jan 27 17:21:32 2022 -0800
Update gencode import to finish remove of use of older code in a different tree. This is the first step towards simplifying the build process
- src/hg/makeDb/schema/all.joiner
- lines changed 95, context: html, text, full: html, text
7f3a7738bd88d2762069a28e9ee35039fa915f48 Wed Jan 26 07:28:30 2022 -0800
import of GENCODE V40 pre-release
- lines changed 95, context: html, text, full: html, text
07942970a19230fee2cbb6bf8ae1c15427533c66 Wed Jan 26 08:53:49 2022 -0800
loaded GENCODE VM29 pre-release
- lines changed 90, context: html, text, full: html, text
e0dcc4f87e4051aa6094860e0f2a9536e90c97c9 Thu Jan 27 18:02:39 2022 -0800
import of GENCODE V40lift37 pre-release
- src/hg/makeDb/trackDb/dog/canFam4/trackDb.ra
- lines changed 2, context: html, text, full: html, text
ede10f8541b3402dc877b377d62d63e9f6dad475 Wed Jan 26 15:12:50 2022 -0800
adding NCBI RefSeq genes to canFam4 browser from RefSeq release GCF_011100685.1_UU_Cfam_GSD_1.0
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV40lift37.html
- lines changed 32, context: html, text, full: html, text
e0dcc4f87e4051aa6094860e0f2a9536e90c97c9 Thu Jan 27 18:02:39 2022 -0800
import of GENCODE V40lift37 pre-release
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV40lift37.ra
- lines changed 224, context: html, text, full: html, text
e0dcc4f87e4051aa6094860e0f2a9536e90c97c9 Thu Jan 27 18:02:39 2022 -0800
import of GENCODE V40lift37 pre-release
- src/hg/makeDb/trackDb/human/hg38/omimGene2.html
- lines changed 9, context: html, text, full: html, text
90df56c8f9c941333d27c86fc8c81063734cdf4f Tue Jan 25 11:58:59 2022 -0800
Adding section describing how to get UCSC format files from OMIM. Refs Max
- src/hg/makeDb/trackDb/human/hg38/omimLocation.html
- lines changed 29, context: html, text, full: html, text
90df56c8f9c941333d27c86fc8c81063734cdf4f Tue Jan 25 11:58:59 2022 -0800
Adding section describing how to get UCSC format files from OMIM. Refs Max
- src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV40.html
- lines changed 47, context: html, text, full: html, text
7f3a7738bd88d2762069a28e9ee35039fa915f48 Wed Jan 26 07:28:30 2022 -0800
import of GENCODE V40 pre-release
- src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV40.ra
- lines changed 286, context: html, text, full: html, text
7f3a7738bd88d2762069a28e9ee35039fa915f48 Wed Jan 26 07:28:30 2022 -0800
import of GENCODE V40 pre-release
- src/hg/makeDb/trackDb/human/omimAvSnp.html
- lines changed 29, context: html, text, full: html, text
90df56c8f9c941333d27c86fc8c81063734cdf4f Tue Jan 25 11:58:59 2022 -0800
Adding section describing how to get UCSC format files from OMIM. Refs Max
- src/hg/makeDb/trackDb/human/omimGene2.html
- lines changed 7, context: html, text, full: html, text
d234b6924674144925fa018624362c2f535f7d94 Tue Jan 25 07:53:34 2022 -0800
adding note how to get OMIM data in UCSC format, no redmine yet, email
to QA
- lines changed 17, context: html, text, full: html, text
90df56c8f9c941333d27c86fc8c81063734cdf4f Tue Jan 25 11:58:59 2022 -0800
Adding section describing how to get UCSC format files from OMIM. Refs Max
- src/hg/makeDb/trackDb/human/omimLocation.html
- lines changed 29, context: html, text, full: html, text
90df56c8f9c941333d27c86fc8c81063734cdf4f Tue Jan 25 11:58:59 2022 -0800
Adding section describing how to get UCSC format files from OMIM. Refs Max
- src/hg/makeDb/trackDb/mouse/mm39/knownGene.alpha.ra
- lines changed 40, context: html, text, full: html, text
1173f00de45632d6ad1e8c7f458259c1f3a61049 Thu Jan 27 16:07:33 2022 -0800
add knownGeneVM28 to mm39
- src/hg/makeDb/trackDb/mouse/mm39/knownGeneArchive.ra
- lines changed 34, context: html, text, full: html, text
8c1556b22eefbda707f88e2b5011992ad96c47d2 Thu Jan 27 16:29:02 2022 -0800
add mm39 knownGene archive supertrack
- src/hg/makeDb/trackDb/mouse/mm39/knownGeneVM28.html
- lines changed 142, context: html, text, full: html, text
1173f00de45632d6ad1e8c7f458259c1f3a61049 Thu Jan 27 16:07:33 2022 -0800
add knownGeneVM28 to mm39
- src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra
- lines changed 3, context: html, text, full: html, text
1173f00de45632d6ad1e8c7f458259c1f3a61049 Thu Jan 27 16:07:33 2022 -0800
add knownGeneVM28 to mm39
- src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM29.html
- lines changed 30, context: html, text, full: html, text
07942970a19230fee2cbb6bf8ae1c15427533c66 Wed Jan 26 08:53:49 2022 -0800
loaded GENCODE VM29 pre-release
- src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM29.ra
- lines changed 286, context: html, text, full: html, text
07942970a19230fee2cbb6bf8ae1c15427533c66 Wed Jan 26 08:53:49 2022 -0800
loaded GENCODE VM29 pre-release
- src/hg/utils/automation/doBigDbSnp.pl
- lines changed 6, context: html, text, full: html, text
ec726ffa6050e6b7b65f5ed885789c850ce87e60 Wed Jan 26 03:20:35 2022 -0800
Tweaking the dobBigDbSnp step fixHg19ChrM since NC_012920 is now just called chrMT in dbsnp data.
- src/hg/utils/hgvsToVcf/hgvsToVcf.c
- lines changed 2, context: html, text, full: html, text
70f5ad4d3afb51df8cd4c1b40dd75a6a0d0ee915 Sat Jan 29 08:13:53 2022 -0800
require that chromAliasSetup be called at init time to avoid potential
thread race conditions
- src/hg/utils/makefile
- lines changed 4, context: html, text, full: html, text
6228e844ec4f8913b72bfa1a247cc8796bc7ed51 Thu Jan 27 10:48:01 2022 -0800
alphabetizing utils
- lines changed 2, context: html, text, full: html, text
4c446684d48539a548814e66a23a036fea6f0a00 Thu Jan 27 10:49:20 2022 -0800
adding vcfToBed to build
- src/hg/utils/overlapSelect/usage.txt
- lines changed 7, context: html, text, full: html, text
458a5bb9b8a7f91f4a85a9a65432627bc7dfcf6c Thu Jan 27 18:08:54 2022 -0800
fixed confusing usage message per user complaint
- src/inc/fieldedTable.h
- lines changed 5, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- src/inc/srcVersion.h
- lines changed 1, context: html, text, full: html, text
414610df564cd8055f16956e9fbbde4488b3387c Mon Jan 31 16:45:33 2022 -0800
New version number v426
- src/lib/fieldedTable.c
- lines changed 27, context: html, text, full: html, text
0564395ec363631f2ff8d295da6f6b50f873fda4 Mon Jan 24 17:01:53 2022 -0800
more chromAlias work: some name changes and support for the new genark
chromAlias format
- lines changed 9, context: html, text, full: html, text
cce51ca0744763b5d358c73cf6190d7a6ea29399 Sun Jan 30 07:38:58 2022 -0800
oops ... added an errant lineFileClose on the last checkin
- src/lib/https.c
- lines changed 12, context: html, text, full: html, text
3b7a68e6da14783b67ff9505c1ab7112e2faafa2 Mon Jan 31 13:31:33 2022 -0800
updating whitelist
- lines changed 13, context: html, text, full: html, text
f4c316f7a4e20c29a0e8f7b4e807af3f4da1878d Mon Jan 31 13:34:34 2022 -0800
For thread safety, moving the setenv so it is only called once during initialization.
- lines changed 13, context: html, text, full: html, text
1f0eb837f23375a1ed494f5f9a064e3c143a4f82 Mon Jan 31 16:29:21 2022 -0800
Revert "For thread safety, moving the setenv so it is only called once during initialization."
This reverts commit f4c316f7a4e20c29a0e8f7b4e807af3f4da1878d.
- src/utils/qa/imageComp.py
- lines changed 145, context: html, text, full: html, text
2e7c6e50483c3afa40a0a21090ba88a3d217bf4e Wed Jan 26 11:18:32 2022 -0800
Adding the image comparison cron to tree which will now run from qa team. This cron compares two static sessions between dev and beta using hgRender and reports an output only if a difference is seen, sending a link to an image of that difference. No RM
- lines changed 2, context: html, text, full: html, text
a400288f45e35d9ba8bea7e137762cc8a1c3dc19 Wed Jan 26 11:21:10 2022 -0800
Adding line for python call at top.
- lines changed 1, context: html, text, full: html, text
de6e2392c8058f537048be27fe9b78df49b2cdf8 Wed Jan 26 12:14:40 2022 -0800
Forgot this was python2.7, not python3.
- src/utils/qa/makefile
- lines changed 1, context: html, text, full: html, text
2e7c6e50483c3afa40a0a21090ba88a3d217bf4e Wed Jan 26 11:18:32 2022 -0800
Adding the image comparison cron to tree which will now run from qa team. This cron compares two static sessions between dev and beta using hgRender and reports an output only if a difference is seen, sending a link to an image of that difference. No RM
- src/utils/qa/weeklybld/buildEnv.csh
- lines changed 3, context: html, text, full: html, text
87a8b9a96b7863ff56670f47bc4931e26a0db701 Mon Jan 31 16:44:37 2022 -0800
v426 final build, refs #28762
- lines changed: 17897
- files changed: 174