File Changes for max

v484_preview to v484_preview2 (2025-06-16 to 2025-06-23) v484

• src/hg/hgTables/mainPage.c
  • lines changed 2, context: html, text, full: html, text
    b8aea5bf5b28fc6430dac4b3b301253188e52310 Fri Jun 20 06:42:00 2025 -0700
    added help note after intersect button, refs #34110
• src/hg/htdocs/images/bergquist25.png
  • lines changed 0, context: html, text, full: html, text
    f763b6b740aa6f6032b803d3eab5ac2c3e554a4e Tue Jun 17 08:46:54 2025 -0700
    fixing up revel docs after email from Heidi Rehm, no redmine.
• src/hg/htdocs/style/HGStyle.css
  • lines changed 6, context: html, text, full: html, text
    52b757fb2d019d4b2ea9f836bff146b1390af435 Fri Jun 20 05:31:01 2025 -0700
    tiny autocomplete change, refs #35939
• src/hg/lib/cart.c
  • lines changed 2, context: html, text, full: html, text
    a217902ac06d246cf240f02be103050c8e95e550 Wed Jun 18 06:38:37 2025 -0700
    no captcha for IGV, refs #35938
• src/hg/makeDb/doc/hg19.txt
  • lines changed 17, context: html, text, full: html, text
    395b531075423d60f7e9abe9edd0810b1a6fc0fc Tue Jun 17 08:24:04 2025 -0700
    finishing up mutscore and mcap tracks, refs #35806, #35922
• src/hg/makeDb/doc/hg38/mutscore.txt
  • lines changed 4, context: html, text, full: html, text
    395b531075423d60f7e9abe9edd0810b1a6fc0fc Tue Jun 17 08:24:04 2025 -0700
    finishing up mutscore and mcap tracks, refs #35806, #35922
• src/hg/makeDb/hgLoadMaf/hgLoadMafSummary.c
  • lines changed 10, context: html, text, full: html, text
    624acd88b4ea5f265652ad6703c756997ed67e0b Tue Jun 17 16:11:57 2025 -0700
    not allowing two dots anymore, always split on the first dot. If sequences include dots, must use pipe character now, no redmine yet
• src/hg/makeDb/scripts/mcap/mcapToBw.py
  • lines changed 51, context: html, text, full: html, text
    395b531075423d60f7e9abe9edd0810b1a6fc0fc Tue Jun 17 08:24:04 2025 -0700
    finishing up mutscore and mcap tracks, refs #35806, #35922
• src/hg/makeDb/trackDb/human/hg38/unusualcons.ra
  • lines changed 2, context: html, text, full: html, text
    c6235f265d85c7ab55dd84b2e2d773604e3ac2ec Tue Jun 17 02:21:00 2025 -0700
    fixing incorrect bigbed sizes, refs #35703
• src/hg/makeDb/trackDb/human/mcap.ra
  • lines changed 66, context: html, text, full: html, text
    395b531075423d60f7e9abe9edd0810b1a6fc0fc Tue Jun 17 08:24:04 2025 -0700
    finishing up mutscore and mcap tracks, refs #35806, #35922
• src/hg/makeDb/trackDb/human/mutscore.ra
  • lines changed 1, context: html, text, full: html, text
    395b531075423d60f7e9abe9edd0810b1a6fc0fc Tue Jun 17 08:24:04 2025 -0700
    finishing up mutscore and mcap tracks, refs #35806, #35922
• src/hg/makeDb/trackDb/human/predictionScoresSuper.html
  • lines changed 79, context: html, text, full: html, text
    0af931d3102ad6cca6a357e6d831774b5efaf6eb Tue Jun 17 08:02:55 2025 -0700
    fixing prediction scores track ra file, broke build
  • lines changed 20, context: html, text, full: html, text
    c613ca6dd305b556af1148511ecd737317b3fe5b Tue Jun 17 08:48:49 2025 -0700
    improving docs page of deleteriousness supertrack, no redmine, email from Heidi Rehm
• src/hg/makeDb/trackDb/human/predictionScoresSuper.ra
  • lines changed 1, context: html, text, full: html, text
    0af931d3102ad6cca6a357e6d831774b5efaf6eb Tue Jun 17 08:02:55 2025 -0700
    fixing prediction scores track ra file, broke build
• src/hg/makeDb/trackDb/human/revel.html
  • lines changed 24, context: html, text, full: html, text
    f763b6b740aa6f6032b803d3eab5ac2c3e554a4e Tue Jun 17 08:46:54 2025 -0700
    fixing up revel docs after email from Heidi Rehm, no redmine.
  • lines changed 2, context: html, text, full: html, text
    c613ca6dd305b556af1148511ecd737317b3fe5b Tue Jun 17 08:48:49 2025 -0700
    improving docs page of deleteriousness supertrack, no redmine, email from Heidi Rehm
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    9ba17dc870467d703e50e0bab531d590dbbc01ac Tue Jun 17 13:36:36 2025 -0700
    adding another file that I forgot to commit, mea culpa
• src/hg/utils/otto/clinvar/clinVarToBed
  • lines changed 20, context: html, text, full: html, text
    cc9815dcc544d9bfaa660557feefa1ab4364ecb6 Thu Jun 19 05:45:56 2025 -0700
    add triangles to clinvar tracks, add clinvar lollies to archive, add a validation to the clinvar sub lollies script, refs #35750
• src/hg/utils/otto/clinvar/clinvar.as
  • lines changed 1, context: html, text, full: html, text
    cc9815dcc544d9bfaa660557feefa1ab4364ecb6 Thu Jun 19 05:45:56 2025 -0700
    add triangles to clinvar tracks, add clinvar lollies to archive, add a validation to the clinvar sub lollies script, refs #35750
• src/hg/utils/otto/clinvar/clinvarSub.sql
  • lines changed 1, context: html, text, full: html, text
    cc9815dcc544d9bfaa660557feefa1ab4364ecb6 Thu Jun 19 05:45:56 2025 -0700
    add triangles to clinvar tracks, add clinvar lollies to archive, add a validation to the clinvar sub lollies script, refs #35750
• src/hg/utils/otto/clinvar/clinvarSubBB.as
  • lines changed 34, context: html, text, full: html, text
    cc9815dcc544d9bfaa660557feefa1ab4364ecb6 Thu Jun 19 05:45:56 2025 -0700
    add triangles to clinvar tracks, add clinvar lollies to archive, add a validation to the clinvar sub lollies script, refs #35750
• src/hg/utils/otto/clinvar/clinvarSubLolly
  • lines changed 17, context: html, text, full: html, text
    cc9815dcc544d9bfaa660557feefa1ab4364ecb6 Thu Jun 19 05:45:56 2025 -0700
    add triangles to clinvar tracks, add clinvar lollies to archive, add a validation to the clinvar sub lollies script, refs #35750
• src/hg/utils/otto/clinvar/clinvarSubLolly.as
  • lines changed 21, context: html, text, full: html, text
    cc9815dcc544d9bfaa660557feefa1ab4364ecb6 Thu Jun 19 05:45:56 2025 -0700
    add triangles to clinvar tracks, add clinvar lollies to archive, add a validation to the clinvar sub lollies script, refs #35750
• src/utils/bigMaxPercDiff/bigMaxPercDiff
  • lines changed 67, context: html, text, full: html, text
    f7212354c8d10da6eaa5ac6618c2428ac7902ccc Thu Jun 19 07:36:50 2025 -0700
    adding a tool bigMaxPercDiff to compare two bigBed/bigWig files and exit with error if they differ in more than x percent, refs #35750
• src/utils/makefile
  • lines changed 1, context: html, text, full: html, text
    f7212354c8d10da6eaa5ac6618c2428ac7902ccc Thu Jun 19 07:36:50 2025 -0700
    adding a tool bigMaxPercDiff to compare two bigBed/bigWig files and exit with error if they differ in more than x percent, refs #35750