Commits for max

v484_preview to v484_preview2 (2025-06-16 to 2025-06-23) v484

c6235f265d85c7ab55dd84b2e2d773604e3ac2ec Tue Jun 17 02:21:00 2025 -0700

• fixing incorrect bigbed sizes, refs #35703
  • src/hg/makeDb/trackDb/human/hg38/unusualcons.ra - lines changed 2, context: html, text, full: html, text

0af931d3102ad6cca6a357e6d831774b5efaf6eb Tue Jun 17 08:02:55 2025 -0700

• fixing prediction scores track ra file, broke build
  • src/hg/makeDb/trackDb/human/predictionScoresSuper.html - lines changed 79, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/predictionScoresSuper.ra - lines changed 1, context: html, text, full: html, text

395b531075423d60f7e9abe9edd0810b1a6fc0fc Tue Jun 17 08:24:04 2025 -0700

• finishing up mutscore and mcap tracks, refs #35806, #35922
  • src/hg/makeDb/doc/hg19.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/mutscore.txt - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/scripts/mcap/mcapToBw.py - lines changed 51, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/mcap.ra - lines changed 66, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/mutscore.ra - lines changed 1, context: html, text, full: html, text

f763b6b740aa6f6032b803d3eab5ac2c3e554a4e Tue Jun 17 08:46:54 2025 -0700

• fixing up revel docs after email from Heidi Rehm, no redmine.
  • src/hg/htdocs/images/bergquist25.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/makeDb/trackDb/human/revel.html - lines changed 24, context: html, text, full: html, text

c613ca6dd305b556af1148511ecd737317b3fe5b Tue Jun 17 08:48:49 2025 -0700

• improving docs page of deleteriousness supertrack, no redmine, email from Heidi Rehm
  • src/hg/makeDb/trackDb/human/predictionScoresSuper.html - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/revel.html - lines changed 2, context: html, text, full: html, text

9ba17dc870467d703e50e0bab531d590dbbc01ac Tue Jun 17 13:36:36 2025 -0700

• adding another file that I forgot to commit, mea culpa
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 2, context: html, text, full: html, text

624acd88b4ea5f265652ad6703c756997ed67e0b Tue Jun 17 16:11:57 2025 -0700

• not allowing two dots anymore, always split on the first dot. If sequences include dots, must use pipe character now, no redmine yet
  • src/hg/makeDb/hgLoadMaf/hgLoadMafSummary.c - lines changed 10, context: html, text, full: html, text

a217902ac06d246cf240f02be103050c8e95e550 Wed Jun 18 06:38:37 2025 -0700

• no captcha for IGV, refs #35938
  • src/hg/lib/cart.c - lines changed 2, context: html, text, full: html, text

cc9815dcc544d9bfaa660557feefa1ab4364ecb6 Thu Jun 19 05:45:56 2025 -0700

• add triangles to clinvar tracks, add clinvar lollies to archive, add a validation to the clinvar sub lollies script, refs #35750
  • src/hg/utils/otto/clinvar/clinVarToBed - lines changed 20, context: html, text, full: html, text
  • src/hg/utils/otto/clinvar/clinvar.as - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/otto/clinvar/clinvarSub.sql - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/otto/clinvar/clinvarSubBB.as - lines changed 34, context: html, text, full: html, text
  • src/hg/utils/otto/clinvar/clinvarSubLolly - lines changed 17, context: html, text, full: html, text
  • src/hg/utils/otto/clinvar/clinvarSubLolly.as - lines changed 21, context: html, text, full: html, text

f7212354c8d10da6eaa5ac6618c2428ac7902ccc Thu Jun 19 07:36:50 2025 -0700

• adding a tool bigMaxPercDiff to compare two bigBed/bigWig files and exit with error if they differ in more than x percent, refs #35750
  • src/utils/bigMaxPercDiff/bigMaxPercDiff - lines changed 67, context: html, text, full: html, text
  • src/utils/makefile - lines changed 1, context: html, text, full: html, text

52b757fb2d019d4b2ea9f836bff146b1390af435 Fri Jun 20 05:31:01 2025 -0700

• tiny autocomplete change, refs #35939
  • src/hg/htdocs/style/HGStyle.css - lines changed 6, context: html, text, full: html, text

b8aea5bf5b28fc6430dac4b3b301253188e52310 Fri Jun 20 06:42:00 2025 -0700

• added help note after intersect button, refs #34110
  • src/hg/hgTables/mainPage.c - lines changed 2, context: html, text, full: html, text