Commits for kent

v301_preview to v301_preview2 (2014-05-26 to 2014-06-02) v301

• Defining UNAME_S per Hiram's feedback, since it is not like I assume defined already.
  • src/hg/makefile - lines changed 1, context: html, text, full: html, text
• Adding a few UC Regents Copyrights I missed in last round.
  • src/lib/axt.c - lines changed 3, context: html, text, full: html, text
  • src/lib/filePath.c - lines changed 1, context: html, text, full: html, text
• Adding spacing for readability around some copyrights notices that needed it.
  • src/lib/flydna.c - lines changed 1, context: html, text, full: html, text
  • src/lib/fof.c - lines changed 1, context: html, text, full: html, text
  • src/lib/gff.c - lines changed 1, context: html, text, full: html, text
  • src/lib/gfxPoly.c - lines changed 1, context: html, text, full: html, text
  • src/lib/maf.c - lines changed 1, context: html, text, full: html, text
  • src/lib/mafFromAxt.c - lines changed 1, context: html, text, full: html, text
  • src/lib/pipeline.c - lines changed 1, context: html, text, full: html, text
  • src/lib/psGfx.c - lines changed 1, context: html, text, full: html, text
  • src/lib/psPoly.c - lines changed 1, context: html, text, full: html, text
  • src/lib/pslTbl.c - lines changed 1, context: html, text, full: html, text
  • src/lib/scoreWindow.c - lines changed 1, context: html, text, full: html, text
  • src/lib/seg.c - lines changed 1, context: html, text, full: html, text
  • src/lib/xa.c - lines changed 1, context: html, text, full: html, text
• Adding Jim Kent copyright notices to a few files that needed it.
  • src/lib/diGraph.c - lines changed 4, context: html, text, full: html, text
  • src/lib/mgCircle.c - lines changed 3, context: html, text, full: html, text
  • src/lib/mgPolygon.c - lines changed 3, context: html, text, full: html, text
  • src/lib/rainbow.c - lines changed 3, context: html, text, full: html, text
  • src/lib/xAli.c - lines changed 3, context: html, text, full: html, text
• Adding spacing for readability around some copyrights notices that needed it.
  • src/lib/xenshow.c - lines changed 1, context: html, text, full: html, text
• First cut at a GTEx fake plotter
  • src/hg/oneShot/tryGtexBoxPlot/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/oneShot/tryGtexBoxPlot/tryGtexBoxPlot.c - lines changed 218, context: html, text, full: html, text
• Polishing doubleBoxWhiskerCalc to work well for small Ns.
  • src/lib/common.c - lines changed 31, context: html, text, full: html, text
• It's doing a passible imitation of a Tukey box plot.
  • src/hg/oneShot/tryGtexBoxPlot/tryGtexBoxPlot.c - lines changed 122, context: html, text, full: html, text
• Making outliers dots only appear outside of whiskers.
  • src/hg/oneShot/tryGtexBoxPlot/tryGtexBoxPlot.c - lines changed 12, context: html, text, full: html, text
• Librarified fq i/o
  • src/hg/encode3/encodeDataWarehouse/utils/edwSolexaToSangerFastq/edwSolexaToSangerFastq.c - lines changed 54, context: html, text, full: html, text
  • src/inc/fq.h - lines changed 15, context: html, text, full: html, text
  • src/lib/fq.c - lines changed 57, context: html, text, full: html, text
  • src/lib/makefile - lines changed 1, context: html, text, full: html, text