File Changes for kate

v324_preview2 to v324_base (2015-10-19 to 2015-10-26) v324

• src/hg/hgGtexApi/hgGtexApi.c
  • lines changed 78, context: html, text, full: html, text
    Checking in graph exploratory work (JS D3) to save it (in a branch) before whacking. refs #15645
    
• src/hg/hgGtexApi/makefile
  • lines changed 14, context: html, text, full: html, text
    Checking in graph exploratory work (JS D3) to save it (in a branch) before whacking. refs #15645
    
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 4, context: html, text, full: html, text
    Add support for GTEX tissue color scheme. refs #15645
    
• src/hg/hgTracks/gtexTracks.c
  • lines changed 177, context: html, text, full: html, text
    First cut GTEX gene track display. refs #13504
    
  • lines changed 58, context: html, text, full: html, text
    Add alternate displays for different zoom levels. refs #13504
    
  • lines changed 51, context: html, text, full: html, text
    Add support for GTEX tissue color scheme. refs #15645
    
  • lines changed 91, context: html, text, full: html, text
    Mouseover improvements. refs #15645
    
  • lines changed 116, context: html, text, full: html, text
    Add squished gene model under expression graph (address concern of SAB and others re anchoring to genome. refs #15645
    
  • lines changed 41, context: html, text, full: html, text
    Better placement of map boxes for mouseover. refs #15645
    
  • lines changed 33, context: html, text, full: html, text
    Add faint gray line under graph to show extent when bars are missing. refs #15645
    
  • lines changed 33, context: html, text, full: html, text
    1. Fix pack problem. 2. Fix map box in dense/squish. refs #15645
    
  • lines changed 129, context: html, text, full: html, text
    Add support for comparison graphs (2 graphs, one top and one below inverted, based on splitting samples by sex or age). First cut of display only. refs #15645
    
  • lines changed 43, context: html, text, full: html, text
    Scale wrt all genes, not just those in window. We now save the max tissue median score in the gtexInfo table. refs #15645
    
  • lines changed 2, context: html, text, full: html, text
    Allow comparison graphs when zoomed out (suppress only when this requires querying the sample db which would be too slow). refs #15645
    
  • lines changed 51, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
  • lines changed 40, context: html, text, full: html, text
    Fix a few bugs - connection handling, bin field in genePred, more color handling - introduced while messing with schemas (to extend features and improve perf). refs #15645
    
  • lines changed 181, context: html, text, full: html, text
    Major reorg of track load/draw, prep for computing medians (for filtering and comparison graphs. refs #15645
    
  • lines changed 36, context: html, text, full: html, text
    More prep moved to loader. Fix mapping problem in squish mode. refs #15645
    
  • lines changed 106, context: html, text, full: html, text
    Implement medians computed on sub-samples (initially for M/F comparison. refs #15645
    
  • lines changed 74, context: html, text, full: html, text
    Add labels (e.g. M/F) to comparison graphs. refs #15645
    
  • lines changed 190, context: html, text, full: html, text
    Ifdef'ed in Galt's support for multi-region display, so continuing development can consider it. refs #15645
    
  • lines changed 29, context: html, text, full: html, text
    Add log transform option to display config. refs #15645
    
  • lines changed 4, context: html, text, full: html, text
    Cleanup trackUi in prep for merging into main. refs #15645
    
  • lines changed 404, context: html, text, full: html, text
    Code cleanup, in preparation for branch merge. refs #15645
    
  • lines changed 146, context: html, text, full: html, text
    Add map box to comparison graph. Code cleanup. refs #15645
    
  • lines changed 43, context: html, text, full: html, text
    Improve display for non-log transformed by adding max view limit. refs #15645
    
  • lines changed 47, context: html, text, full: html, text
    Fix map boxes on non-log display. refs #15645
    
• src/hg/hgTracks/hgTracks.c
  • lines changed 10, context: html, text, full: html, text
    GTEX track display: Add hgc to show tissue color table. Add debug statements for hgTracks. Also doc. This is version demoed at SAB. refs #13504
    
  • lines changed 3, context: html, text, full: html, text
    Minor cleanup
    
  • lines changed 3, context: html, text, full: html, text
    Resolving merge
    
• src/hg/hgTracks/hgTracks.h
  • lines changed 3, context: html, text, full: html, text
    Some initial display work for GTEX gene expression track. refs #13504
    
• src/hg/hgTracks/imageV2.c
  • lines changed 2, context: html, text, full: html, text
    Label fix. Clarify imageV2 warning. refs #15645
    
• src/hg/hgTracks/makefile
  • lines changed 2, context: html, text, full: html, text
    Some initial display work for GTEX gene expression track. refs #13504
    
  • lines changed 4, context: html, text, full: html, text
    Conflict resolution
    
• src/hg/hgTracks/simpleTracks.c
  • lines changed 3, context: html, text, full: html, text
    Some initial display work for GTEX gene expression track. refs #13504
    
• src/hg/hgc/gtex/geneBoxplot.R
  • lines changed 31, context: html, text, full: html, text
    Initial code for R-based graph on GTEx details page. refs #15645
    
  • lines changed 35, context: html, text, full: html, text
    Add X axis labels, rotated 45 degrees. Adjust colors, line styles,e tc. refs #15645
    
  • lines changed 29, context: html, text, full: html, text
    Scale graph limits and place X axis labels appropriately for variously ranged graphs, and log transformed data. refs #15645
    
  • lines changed 11, context: html, text, full: html, text
    Colors and labels now reordered propertly. refs #15645
    
  • lines changed 2, context: html, text, full: html, text
    Fix label ordering. This is final check-in before ripping out alternate implementations (JS and C). Will keep this in a branch. refs #15645
    
  • lines changed 74, context: html, text, full: html, text
    Code cleanup in preparation for mergingin into main. refs #15645
    
• src/hg/hgc/gtex/tissueColors.R
  • lines changed 58, context: html, text, full: html, text
    Checking in graph exploratory work (JS D3) to save it (in a branch) before whacking. refs #15645
    
  • lines changed 58, context: html, text, full: html, text
    Code cleanup in preparation for mergingin into main. refs #15645
    
• src/hg/hgc/gtexClick.c
  • lines changed 88, context: html, text, full: html, text
    Move GTEx track details into separate file. refs #13504
    
  • lines changed 229, context: html, text, full: html, text
    First cut gene expression boxplot image for GTEx details page. refs #15645
    
  • lines changed 24, context: html, text, full: html, text
    1. Graph aesthetics (colors, etc.). 2. Change ordering to median descending. refs #15645
    
  • lines changed 34, context: html, text, full: html, text
    A stab at adding axes and title to graph for GTEx details page. refs #15645
    
  • lines changed 49, context: html, text, full: html, text
    Preliminary work to add tick marks and sanity check Y axis label (max value) on GTEx expression graph. refs #15645
    
  • lines changed 252, context: html, text, full: html, text
    Exploratory use of D3 JS for boxplot on GTEX gene track details page. refs #15645
    
  • lines changed 47, context: html, text, full: html, text
    Initial code for R-based graph on GTEx details page. refs #15645
    
  • lines changed 7, context: html, text, full: html, text
    Add X axis labels, rotated 45 degrees. Adjust colors, line styles,e tc. refs #15645
    
  • lines changed 7, context: html, text, full: html, text
    Scale graph limits and place X axis labels appropriately for variously ranged graphs, and log transformed data. refs #15645
    
  • lines changed 6, context: html, text, full: html, text
    Make R graphics default. refs #15645
    
  • lines changed 218, context: html, text, full: html, text
    Code cleanup in preparation for mergingin into main. refs #15645
    
• src/hg/hgc/hgc.c
  • lines changed 75, context: html, text, full: html, text
    GTEX track display: Add hgc to show tissue color table. Add debug statements for hgTracks. Also doc. This is version demoed at SAB. refs #13504
    
  • lines changed 5, context: html, text, full: html, text
    Conflict resolution
    
  • lines changed 18, context: html, text, full: html, text
    Minor work on GTEX details during meeting (much more needed). refs #13504
    
  • lines changed 87, context: html, text, full: html, text
    Merge branch 'master' into gtex
    
  • lines changed 77, context: html, text, full: html, text
    Move GTEx track details into separate file. refs #13504
    
• src/hg/hgc/hgc.h
  • lines changed 3, context: html, text, full: html, text
    GTEX track display: Add hgc to show tissue color table. Add debug statements for hgTracks. Also doc. This is version demoed at SAB. refs #13504
    
• src/hg/hgc/hgcData/gtexBoxplot.R
  • lines changed 72, context: html, text, full: html, text
    Code cleanup in preparation for mergingin into main. refs #15645
    
• src/hg/hgc/hgcData/gtexColorsV4.R
  • lines changed 58, context: html, text, full: html, text
    Code cleanup in preparation for mergingin into main. refs #15645
    
• src/hg/hgc/makefile
  • lines changed 1, context: html, text, full: html, text
    Move GTEx track details into separate file. refs #13504
    
  • lines changed 9, context: html, text, full: html, text
    Checking in graph exploratory work (JS D3) to save it (in a branch) before whacking. refs #15645
    
  • lines changed 9, context: html, text, full: html, text
    Code cleanup in preparation for mergingin into main. refs #15645
    
• src/hg/inc/gtexInfo.h
  • lines changed 71, context: html, text, full: html, text
    Scale wrt all genes, not just those in window. We now save the max tissue median score in the gtexInfo table. refs #15645
    
  • lines changed 23, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
• src/hg/inc/gtexSample.h
  • lines changed 17, context: html, text, full: html, text
    Expand GTEx sample table. Now includes all fields except RNA-seqC metrics, which if we decide to include them, will likley be in an auxiliary table. refs #13504
    
• src/hg/inc/gtexTissue.h
  • lines changed 5, context: html, text, full: html, text
    Get new GTEX data and the color scheme, from GTEX portal. Follow-up from 2015 GTEX meeting. refs #13504
    
  • lines changed 15, context: html, text, full: html, text
    Add support for GTEX tissue color scheme. refs #15645
    
  • lines changed 3, context: html, text, full: html, text
    Restore a bit of lost code.
    
  • lines changed 7, context: html, text, full: html, text
    Fix a few bugs - connection handling, bin field in genePred, more color handling - introduced while messing with schemas (to extend features and improve perf). refs #15645
    
• src/hg/inc/gtexTissueData.h
  • lines changed 30, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
• src/hg/inc/gtexTissueMedian.h
  • lines changed 64, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
• src/hg/inc/gtexUi.h
  • lines changed 19, context: html, text, full: html, text
    Add support for GTEX tissue color scheme. refs #15645
    
  • lines changed 15, context: html, text, full: html, text
    Add support for comparison graphs (2 graphs, one top and one below inverted, based on splitting samples by sex or age). First cut of display only. refs #15645
    
  • lines changed 4, context: html, text, full: html, text
    Add log transform option to display config. refs #15645
    
  • lines changed 28, context: html, text, full: html, text
    Cleanup trackUi in prep for merging into main. refs #15645
    
  • lines changed 2, context: html, text, full: html, text
    Improve display for non-log transformed by adding max view limit. refs #15645
    
  • lines changed 1, context: html, text, full: html, text
    Fix map boxes on non-log display. refs #15645
    
• src/hg/inc/hui.h
  • lines changed 3, context: html, text, full: html, text
    Add support for GTEX tissue color scheme. refs #15645
    
• src/hg/js/d3.min.js
  • lines changed 5, context: html, text, full: html, text
    Checking in graph exploratory work (JS D3) to save it (in a branch) before whacking. refs #15645
    
  • lines changed 5, context: html, text, full: html, text
    Code cleanup in preparation for mergingin into main. refs #15645
    
• src/hg/js/d3plus.gtex.js
  • lines changed 33973, context: html, text, full: html, text
    Checking in graph exploratory work (JS D3) to save it (in a branch) before whacking. refs #15645
    
  • lines changed 33973, context: html, text, full: html, text
    Code cleanup in preparation for mergingin into main. refs #15645
    
• src/hg/js/gtex.js
  • lines changed 18, context: html, text, full: html, text
    Checking in graph exploratory work (JS D3) to save it (in a branch) before whacking. refs #15645
    
  • lines changed 18, context: html, text, full: html, text
    Code cleanup in preparation for mergingin into main. refs #15645
    
• src/hg/js/makefile
  • lines changed 4, context: html, text, full: html, text
    Exploratory use of D3 JS for boxplot on GTEX gene track details page. refs #15645
    
  • lines changed 2, context: html, text, full: html, text
    Code cleanup in preparation for mergingin into main. refs #15645
    
  • lines changed 2, context: html, text, full: html, text
    Backing out JS details page for GTEx
    
• src/hg/lib/bed6FloatVal.as
  • lines changed 12, context: html, text, full: html, text
    Schemas for GTEX exon and gene tracks. Likely interim. refs #15648
    
• src/hg/lib/bed6FloatVal.sql
  • lines changed 20, context: html, text, full: html, text
    Schemas for GTEX exon and gene tracks. Likely interim. refs #15648
    
• src/hg/lib/gtexGeneBed.sql
  • lines changed 21, context: html, text, full: html, text
    Schemas for GTEX exon and gene tracks. Likely interim. refs #15648
    
• src/hg/lib/gtexInfo.as
  • lines changed 7, context: html, text, full: html, text
    Scale wrt all genes, not just those in window. We now save the max tissue median score in the gtexInfo table. refs #15645
    
  • lines changed 1, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
• src/hg/lib/gtexInfo.c
  • lines changed 162, context: html, text, full: html, text
    Scale wrt all genes, not just those in window. We now save the max tissue median score in the gtexInfo table. refs #15645
    
  • lines changed 49, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
  • lines changed 3, context: html, text, full: html, text
    Fix a few bugs - connection handling, bin field in genePred, more color handling - introduced while messing with schemas (to extend features and improve perf). refs #15645
    
• src/hg/lib/gtexInfo.sql
  • lines changed 13, context: html, text, full: html, text
    Scale wrt all genes, not just those in window. We now save the max tissue median score in the gtexInfo table. refs #15645
    
  • lines changed 1, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
• src/hg/lib/gtexSample.as
  • lines changed 11, context: html, text, full: html, text
    Expand GTEx sample table. Now includes all fields except RNA-seqC metrics, which if we decide to include them, will likley be in an auxiliary table. refs #13504
    
• src/hg/lib/gtexSample.c
  • lines changed 77, context: html, text, full: html, text
    Expand GTEx sample table. Now includes all fields except RNA-seqC metrics, which if we decide to include them, will likley be in an auxiliary table. refs #13504
    
• src/hg/lib/gtexSample.sql
  • lines changed 12, context: html, text, full: html, text
    Expand GTEx sample table. Now includes all fields except RNA-seqC metrics, which if we decide to include them, will likley be in an auxiliary table. refs #13504
    
• src/hg/lib/gtexSampleData.sql
  • lines changed 2, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
• src/hg/lib/gtexTissue.as
  • lines changed 1, context: html, text, full: html, text
    Get new GTEX data and the color scheme, from GTEX portal. Follow-up from 2015 GTEX meeting. refs #13504
    
• src/hg/lib/gtexTissue.c
  • lines changed 24, context: html, text, full: html, text
    Get new GTEX data and the color scheme, from GTEX portal. Follow-up from 2015 GTEX meeting. refs #13504
    
  • lines changed 36, context: html, text, full: html, text
    Add support for GTEX tissue color scheme. refs #15645
    
  • lines changed 18, context: html, text, full: html, text
    Restore a bit of lost code.
    
  • lines changed 19, context: html, text, full: html, text
    Fix a few bugs - connection handling, bin field in genePred, more color handling - introduced while messing with schemas (to extend features and improve perf). refs #15645
    
• src/hg/lib/gtexTissue.sql
  • lines changed 1, context: html, text, full: html, text
    Get new GTEX data and the color scheme, from GTEX portal. Follow-up from 2015 GTEX meeting. refs #13504
    
• src/hg/lib/gtexTissueData.as
  • lines changed 7, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
• src/hg/lib/gtexTissueData.c
  • lines changed 102, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
• src/hg/lib/gtexTissueData.sql
  • lines changed 9, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
• src/hg/lib/gtexTissueMedian.as
  • lines changed 7, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
• src/hg/lib/gtexTissueMedian.c
  • lines changed 158, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
• src/hg/lib/gtexTissueMedian.sql
  • lines changed 13, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
• src/hg/lib/gtexUi.c
  • lines changed 56, context: html, text, full: html, text
    Cleanup trackUi in prep for merging into main. refs #15645
    
  • lines changed 2, context: html, text, full: html, text
    Improve display for non-log transformed by adding max view limit. refs #15645
    
• src/hg/lib/hui.c
  • lines changed 20, context: html, text, full: html, text
    Mouseover display of tissues now works a bit better. Still fragile & messy (don't bother reviewing this commit). refs #15645
    
  • lines changed 34, context: html, text, full: html, text
    Add support for comparison graphs (2 graphs, one top and one below inverted, based on splitting samples by sex or age). First cut of display only. refs #15645
    
  • lines changed 10, context: html, text, full: html, text
    Add log transform option to display config. refs #15645
    
  • lines changed 59, context: html, text, full: html, text
    Cleanup trackUi in prep for merging into main. refs #15645
    
• src/hg/lib/makefile
  • lines changed 2, context: html, text, full: html, text
    Scale wrt all genes, not just those in window. We now save the max tissue median score in the gtexInfo table. refs #15645
    
  • lines changed 1, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
  • lines changed 1, context: html, text, full: html, text
    Cleanup trackUi in prep for merging into main. refs #15645
    
• src/hg/makeDb/doc/gtex/2014-jan.txt
  • lines changed 6, context: html, text, full: html, text
    GTEX track display: Add hgc to show tissue color table. Add debug statements for hgTracks. Also doc. This is version demoed at SAB. refs #13504
    
  • lines changed 9, context: html, text, full: html, text
    Download recent eQTL data. refs #13504
    
  • lines changed 3, context: html, text, full: html, text
    Get new GTEX data and the color scheme, from GTEX portal. Follow-up from 2015 GTEX meeting. refs #13504
    
  • lines changed 9, context: html, text, full: html, text
    Mouseover display of tissues now works a bit better. Still fragile & messy (don't bother reviewing this commit). refs #15645
    
  • lines changed 21, context: html, text, full: html, text
    Loaded gene models from GTEX portal. refs #15645
    
  • lines changed 14, context: html, text, full: html, text
    Scale wrt all genes, not just those in window. We now save the max tissue median score in the gtexInfo table. refs #15645
    
  • lines changed 3, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
  • lines changed 52, context: html, text, full: html, text
    Create build tool and build tracks of GTEX exon expression. refs #15648
    
  • lines changed 50, context: html, text, full: html, text
    Fix chrM entries in exon files. refs #15648
    
  • lines changed 49, context: html, text, full: html, text
    Resolving conflict
    
  • lines changed 19, context: html, text, full: html, text
    Expand GTEx sample table. Now includes all fields except RNA-seqC metrics, which if we decide to include them, will likley be in an auxiliary table. refs #13504
    
  • lines changed 61, context: html, text, full: html, text
    1. Add eQTL and variants tracks. 2. Modify loader to exclude expression table rows with zero-valued scores (shrinks table by half). 3. Prep a data frame for R (make a few plots to explore the data). refs #1350
    
  • lines changed 9, context: html, text, full: html, text
    Reload tissue median table to fix ordering problem in exp list. refs #15645
    
  • lines changed 15, context: html, text, full: html, text
    Fix label ordering. This is final check-in before ripping out alternate implementations (JS and C). Will keep this in a branch. refs #15645
    
• src/hg/makeDb/doc/hg19.txt
  • lines changed 37, context: html, text, full: html, text
    GTEX track display: Add hgc to show tissue color table. Add debug statements for hgTracks. Also doc. This is version demoed at SAB. refs #13504
    
  • lines changed 122, context: html, text, full: html, text
    Conflict resolution
    
  • lines changed 4, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
  • lines changed 48, context: html, text, full: html, text
    Fix chrM entries in exon files. refs #15648
    
  • lines changed 1, context: html, text, full: html, text
    Reload tissue median table to fix ordering problem in exp list. refs #15645
    
• src/hg/makeDb/outside/hgGtex/hgGtex.c
  • lines changed 37, context: html, text, full: html, text
    Scale wrt all genes, not just those in window. We now save the max tissue median score in the gtexInfo table. refs #15645
    
  • lines changed 80, context: html, text, full: html, text
    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
  • lines changed 68, context: html, text, full: html, text
    Create build tool and build tracks of GTEX exon expression. refs #15648
    
  • lines changed 60, context: html, text, full: html, text
    Expand GTEx sample table. Now includes all fields except RNA-seqC metrics, which if we decide to include them, will likley be in an auxiliary table. refs #13504
    
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    1. Add eQTL and variants tracks. 2. Modify loader to exclude expression table rows with zero-valued scores (shrinks table by half). 3. Prep a data frame for R (make a few plots to explore the data). refs #1350
    
• src/hg/makeDb/outside/hgGtexExonBed/hgGtexExonBed.c
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    Create build tool and build tracks of GTEX exon expression. refs #15648
    
• src/hg/makeDb/outside/hgGtexExonBed/makefile
  • lines changed 4, context: html, text, full: html, text
    Create build tool and build tracks of GTEX exon expression. refs #15648
    
• src/hg/makeDb/outside/hgGtexGeneBed/hgGtexGeneBed.c
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    Fix options syntax
    
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    1. Fix tissue ordering problem (hgGtex). 2. Add stats table (rename gtexTissueData to gtexTissueMedian and use gtexTissueData for stats. 3. Extend gtexInfo table.refs #15645
    
• src/hg/makeDb/outside/makefile
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    Create build tool and build tracks of GTEX exon expression. refs #15648
    
• src/hg/makeDb/trackDb/human/gtexGeneExpr.html
  • lines changed 34, context: html, text, full: html, text
    Label fix. Clarify imageV2 warning. refs #15645
    
• src/hg/makeDb/trackDb/human/trackDb.gtex.ra
  • lines changed 495, context: html, text, full: html, text
    Create build tool and build tracks of GTEX exon expression. refs #15648
    
  • lines changed 54, context: html, text, full: html, text
    Tweak labels. refs #15645
    
  • lines changed 2, context: html, text, full: html, text
    Correct donor count. Just use donors in sample table. refs #13504
    
  • lines changed 16, context: html, text, full: html, text
    1. Add eQTL and variants tracks. 2. Modify loader to exclude expression table rows with zero-valued scores (shrinks table by half). 3. Prep a data frame for R (make a few plots to explore the data). refs #1350
    
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 6, context: html, text, full: html, text
    Some initial display work for GTEX gene expression track. refs #13504
    
  • lines changed 2, context: html, text, full: html, text
    GTEX track display: Add hgc to show tissue color table. Add debug statements for hgTracks. Also doc. This is version demoed at SAB. refs #13504
    
  • lines changed 2, context: html, text, full: html, text
    Correct sample and tissue counts in track label. refs #13504
    
  • lines changed 1, context: html, text, full: html, text
    Label fix. Clarify imageV2 warning. refs #15645
    
  • lines changed 16, context: html, text, full: html, text
    Create build tool and build tracks of GTEX exon expression. refs #15648
    
• src/inc/memgfx.h
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    Add support for GTEX tissue color scheme. refs #15645
    
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    Merge branch 'master' into gtex
    
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    Resolving merge
    
• src/inc/rainbow.h
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    Add support for GTEX tissue color scheme. refs #15645
    
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    Resolving merge
    
• src/lib/common.c
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    Verbosify a debug statement.
    
• src/lib/rainbow.c
  • lines changed 16, context: html, text, full: html, text
    Add support for GTEX tissue color scheme. refs #15645
    
  • lines changed 23, context: html, text, full: html, text
    Resolving merge