Commits for kate

v356_preview2 to v356_base (2017-10-02 to 2017-10-09) v356

59687fa0ffebfc93647a852ef2611d2ceb4e4f46 Wed Oct 4 16:32:45 2017 -0700

• Minor edits and clarification of CAVIAR probability/credible set from Casey Brown, U Penn (GTEx analyst). refs #15646
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtl.html - lines changed 15, context: html, text, full: html, text

13f8d3e2777e895b5c59af59fb6afad03ad58dbb Wed Oct 4 16:46:46 2017 -0700

• Change config labeling to be clearer. Thanks Cath. refs #15646
  • src/hg/lib/gtexUi.c - lines changed 1, context: html, text, full: html, text

ec903ae4d17d39e1d3ca0490fcbe7c0e061edd5e Wed Oct 4 16:48:16 2017 -0700

• Correct definition of CAVIAR probability; input from Casey Brown, U Penn (GTEx analyst). refs #15646
  • src/hg/inc/gtexEqtlCluster.h - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/gtexEqtl.as - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/gtexEqtl.sql - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/gtexEqtlCluster.as - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/gtexEqtlCluster.sql - lines changed 1, context: html, text, full: html, text

5bdc0c1e3a2e6a4bccc42597fd123ef594a634ce Thu Oct 5 14:55:00 2017 -0700

• Fix 95% set definition again, as per Farhad Hormozdiari (author of CAVIAR). refs #15646
  • src/hg/lib/gtexEqtl.as - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/gtexEqtl.sql - lines changed 1, context: html, text, full: html, text

0822a62eb01e4d6b04c2b8816f1070cc0b25b9e4 Thu Oct 5 15:35:20 2017 -0700

• Make err message more informative.
  • src/hg/makeDb/hgTrackDb/hgTrackDb.c - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtl.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtl.v1.ra - lines changed 415, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 2, context: html, text, full: html, text

dbf690a43c2a57d780e7f6327ca9246b54e7904a Thu Oct 5 15:49:25 2017 -0700

• Add v1 GTEx eQTL tracks. refs #15646
  • src/hg/lib/gtexEqtlTissue.as - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtl.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)

ab836673776cc8476c5c49fa833954fbae3beba0 Thu Oct 5 16:01:04 2017 -0700

• Fix vis on new track. refs #15646
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtl.v1.ra - lines changed 1, context: html, text, full: html, text