All File Changes

v432_preview to v432_preview2 (2022-05-23 to 2022-05-31) v432

• confs/asia.hg.conf
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    76c14d1cbe30deba3aec0cc02125c0fe9b1a80df Sun May 29 01:11:57 2022 -0700
    Installing updated hg.conf files from UCSC servers
• confs/euro.hg.conf
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    76c14d1cbe30deba3aec0cc02125c0fe9b1a80df Sun May 29 01:11:57 2022 -0700
    Installing updated hg.conf files from UCSC servers
• confs/hgwbeta.hg.conf
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    76c14d1cbe30deba3aec0cc02125c0fe9b1a80df Sun May 29 01:11:57 2022 -0700
    Installing updated hg.conf files from UCSC servers
• confs/hgwdev.hg.conf
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    76c14d1cbe30deba3aec0cc02125c0fe9b1a80df Sun May 29 01:11:57 2022 -0700
    Installing updated hg.conf files from UCSC servers
• confs/rr.hg.conf
  • lines changed 1, context: html, text, full: html, text
    76c14d1cbe30deba3aec0cc02125c0fe9b1a80df Sun May 29 01:11:57 2022 -0700
    Installing updated hg.conf files from UCSC servers
• src/hg/cgilib/targetDb.c
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    43276571bcb7a038e6b274be67b9e24f5ffa625f Tue May 24 15:51:09 2022 -0700
    minor error needs sqlDyStringPrintf in targetDb.c. refs #29274.
• src/hg/hgTables/filterFields.c
  • lines changed 10, context: html, text, full: html, text
    0f8172b899832fbc341e973de7f0addabb25337c Sat May 28 16:15:15 2022 -0700
    fixing SQL free-form query for NOSQLINJv2 in hgTables and tablesTables. also did some security testing on the SQL Sanity routine, and found no problems. refs #29274
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    a04e8e0293d354079eb16fe29940e5ef8cc601fe Mon May 30 12:28:50 2022 -0700
    sqlSanity checker works fine with NOSQLINv2. refs #29274
• src/hg/hgTracks/gencodeTracks.c
  • lines changed 25, context: html, text, full: html, text
    9f7e8d3b93fc9d1ed0e1e3e9f8c164f90496e1a8 Tue May 24 14:35:15 2022 -0700
    Fix NOSQLINJv2 bug in genomeTracks.c. Needed to use sql safe functions.
• src/hg/hgTracks/imageV2.c
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    d0dbf26fa75c67764c6cb8cb3aa370cdf62f1e17 Fri May 27 13:13:47 2022 -0700
    fix drag scroll problem with chromAuthority is not the native system
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    d7228ab745723e138b488ee17384286c09c60469 Fri May 27 14:41:09 2022 -0700
    watch out for NULL when looking into aliases
• src/hg/hgTracks/searchTracks.c
  • lines changed 2, context: html, text, full: html, text
    eb81fe8c39c5be59e32291a7533131eb50a95b51 Fri May 27 19:49:45 2022 -0700
    minor fix for NOSQLINJv2, needs sql safe functions calling getHubSearchResults in searchTracks.c. refs #29274
• src/hg/hgTracks/simpleTracks.c
  • lines changed 1, context: html, text, full: html, text
    afffac65ec2d51d24a2c0d779e3c44e41760f1ab Fri May 27 10:21:32 2022 -0700
    minor fix for NOSQLINJv2. needed to use sql safe functions.
• src/hg/hgTracks/wigMafTrack.c
  • lines changed 4, context: html, text, full: html, text
    afffac65ec2d51d24a2c0d779e3c44e41760f1ab Fri May 27 10:21:32 2022 -0700
    minor fix for NOSQLINJv2. needed to use sql safe functions.
• src/hg/hgc/cgapSageClick.c
  • lines changed 1, context: html, text, full: html, text
    afffac65ec2d51d24a2c0d779e3c44e41760f1ab Fri May 27 10:21:32 2022 -0700
    minor fix for NOSQLINJv2. needed to use sql safe functions.
• src/hg/hgc/interactClick.c
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    e5269f4f19e072d14e01eb2b4e53dccd32e04aef Tue May 24 16:20:28 2022 -0700
    fixes problem where interact clicks don't grok chromAlias refs #29453
• src/hg/hgc/pubs.c
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    d72c06628ce3c8a977c5eec289b6e8c7fc2cc5e3 Fri May 27 16:36:45 2022 -0700
    oops minor NOSQLINJv2 fix for pubs.c, I missed proper initialization of artFilterSql should have been sqlSafef(artFilterSql, sizeof(artFilterSql), "%s", ""); Revamped to be better and simpler with dyString. refs #29274
• src/hg/hgc/togaClick.c
  • lines changed 335, context: html, text, full: html, text
    dc33f1e79e44f3d7ac0c8bc63c3c43847325c548 Thu May 26 12:40:57 2022 -0700
    add a new click handler for TOGA tracks from Michael Hiller's group
• src/hg/hgc/togaClick.h
  • lines changed 39, context: html, text, full: html, text
    dc33f1e79e44f3d7ac0c8bc63c3c43847325c548 Thu May 26 12:40:57 2022 -0700
    add a new click handler for TOGA tracks from Michael Hiller's group
• src/hg/htdocs/goldenPath/help/bigRmsk.html
  • lines changed 282, context: html, text, full: html, text
    d3de6531647d5797033474fa96e29cc88df3b37b Thu May 26 09:57:32 2022 -0700
    Not for Code Review, see ticket #29356, check-in of temporary status of bigRmsk at request MarkD
  • lines changed 25, context: html, text, full: html, text
    909449391962ec9312052bf186158d9f5162fcc4 Fri May 27 07:27:01 2022 -0700
    Not for Code Review, see ticket #29356, check-in of temporary examples not fully working for bigRmsk -on T2T CHM13 and align.bb not working yet
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 1, context: html, text, full: html, text
    b133acd63f00270da3bc3238c1737d71cdd07065 Mon May 23 16:42:22 2022 -0700
    Fixing mouseOver setting example, no RM
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    fd8a7567e3f46aaf4db61716cae8d61d75b6ab72 Wed May 25 13:41:40 2022 -0700
    Fixing extraTableFields setting typos, refs #28817
• src/hg/htdocs/goldenPath/help/trix.html
  • lines changed 9, context: html, text, full: html, text
    242be79fd8f99be5b645add0d0a275c1fd58e052 Mon May 30 06:34:08 2022 -0700
    Closing ticket on trix examples, added resources section and link to gpToIx.pl script refs #24091
• src/hg/htdocs/goldenPath/help/twoBit.html
  • lines changed 1, context: html, text, full: html, text
    0ba2642619c71f7423c613ab0b389d9a087698b7 Tue May 24 07:24:52 2022 -0700
    Fixing typo Code Review refs #29481
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 11, context: html, text, full: html, text
    914524d3334b7ccffbf791474cbdd8b8e331b57a Mon May 23 14:54:27 2022 -0700
    Adding an image of working filters on ReMap, as they are cool, good to add in Progress Report and NAR paper refs #28960
  • lines changed 2, context: html, text, full: html, text
    8ef261d1088438332f8a82b74a708d8eb218d045 Mon May 23 15:07:09 2022 -0700
    Making ReMap image a bit larger and removing accidental paragraph close
  • lines changed 28, context: html, text, full: html, text
    97aac8574baeb9f324739745c49500836d0e4264 Tue May 24 06:47:36 2022 -0700
    Adding a newsarch record of the new assembly request page refs #29237
  • lines changed 3, context: html, text, full: html, text
    e17e7664c435f802e6c78ac140593f5f817419a5 Wed May 25 09:27:01 2022 -0700
    News about assembly request page, hint to show all beyond 1st 500 on page refs #29237
• src/hg/htdocs/images/newsArchImages/ReMap.png
  • lines changed 0, context: html, text, full: html, text
    914524d3334b7ccffbf791474cbdd8b8e331b57a Mon May 23 14:54:27 2022 -0700
    Adding an image of working filters on ReMap, as they are cool, good to add in Progress Report and NAR paper refs #28960
• src/hg/htdocs/images/newsArchImages/requestPage.png
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    17b675dfb1c2638b59915f35670db37c4bb4843d Mon May 23 15:56:17 2022 -0700
    Adding a picture for assembly request page refs #29237
• src/hg/htdocs/indexNews.html
  • lines changed 12, context: html, text, full: html, text
    97aac8574baeb9f324739745c49500836d0e4264 Tue May 24 06:47:36 2022 -0700
    Adding a newsarch record of the new assembly request page refs #29237
• src/hg/inc/hubConnect.h
  • lines changed 3, context: html, text, full: html, text
    05eb41c63af8ccd369f76b022d3cf1faab5543c2 Thu May 26 16:25:07 2022 -0700
    changes to support curated hubs
• src/hg/inc/web.h
  • lines changed 2, context: html, text, full: html, text
    05eb41c63af8ccd369f76b022d3cf1faab5543c2 Thu May 26 16:25:07 2022 -0700
    changes to support curated hubs
• src/hg/lib/hgFind.c
  • lines changed 2, context: html, text, full: html, text
    d26fd993b377f1d3426fbedba35bd98d2ba5c3da Tue May 24 16:25:26 2022 -0700
    fix problem with hgFind not using chromAlias refs #29447
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    7b6ed6442a14f0d521f0f4dcc6e2b248094584a0 Wed May 25 08:25:50 2022 -0700
    fix crash I introduced yesterday
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    aa4e38f17873a04c9bdf37d15ea7889ca61c32a2 Wed May 25 08:30:40 2022 -0700
    thrashing with this hgFind fix... sigh. This should put us back to where we started
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    1f76fce263862dbc1f78f22b0d3152b6979e2a40 Wed May 25 17:07:12 2022 -0700
    Let's try this again. Do chrom alias mapping on hgFind searches
• src/hg/lib/hubConnect.c
  • lines changed 41, context: html, text, full: html, text
    05eb41c63af8ccd369f76b022d3cf1faab5543c2 Thu May 26 16:25:07 2022 -0700
    changes to support curated hubs
• src/hg/lib/jksql.c
  • lines changed 9, context: html, text, full: html, text
    8d6c643aa40c23a81cbc16fe0961e78e61b1e5f4 Mon May 30 23:44:54 2022 -0700
    Fixing problem in logOnly and other non-abort modes for NOSQLINJv2.
• src/hg/lib/sqlSanity.c
  • lines changed 43, context: html, text, full: html, text
    a04e8e0293d354079eb16fe29940e5ef8cc601fe Mon May 30 12:28:50 2022 -0700
    sqlSanity checker works fine with NOSQLINv2. refs #29274
• src/hg/lib/tablesTables.c
  • lines changed 10, context: html, text, full: html, text
    0f8172b899832fbc341e973de7f0addabb25337c Sat May 28 16:15:15 2022 -0700
    fixing SQL free-form query for NOSQLINJv2 in hgTables and tablesTables. also did some security testing on the SQL Sanity routine, and found no problems. refs #29274
  • lines changed 10, context: html, text, full: html, text
    a04e8e0293d354079eb16fe29940e5ef8cc601fe Mon May 30 12:28:50 2022 -0700
    sqlSanity checker works fine with NOSQLINv2. refs #29274
• src/hg/lib/trackHub.c
  • lines changed 2, context: html, text, full: html, text
    3c2ed53526889f9cd347ade7e1f71d35aa542cbb Wed May 25 17:54:06 2022 -0700
    on assembly hubs, make sure searches work on both the tracks in the assembly hub AND attached track hubs
• src/hg/lib/web.c
  • lines changed 1, context: html, text, full: html, text
    05eb41c63af8ccd369f76b022d3cf1faab5543c2 Thu May 26 16:25:07 2022 -0700
    changes to support curated hubs
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 1, context: html, text, full: html, text
    b1f85e97a18c011f76d888e300b8c6a8cb3cb882 Mon May 23 11:27:26 2022 -0700
    adding Monkeypox virus GCF_000857045.1_ViralProj15142 refs #29484
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    ea80e849c9fad21f498c29b0774a9c4f48d53619 Fri May 27 11:59:30 2022 -0700
    catch up some zoo241 build commands no redmine
  • lines changed 8, context: html, text, full: html, text
    9e352cf3061981ae52bde1e4403c3d0692343ae3 Fri May 27 12:48:34 2022 -0700
    two assemblies per user request and add some new RefSeq assemblies no redmine
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    49bd1afccc86d31e99cc379c433f76edf8898576 Sun May 29 17:49:06 2022 -0700
    catching up 5 mammal builds no redmine
• src/hg/makeDb/doc/chm13/initial.txt
  • lines changed 33, context: html, text, full: html, text
    8526b4c65858c0f24dec1f4df30b4cc592df1df2 Mon May 23 10:21:57 2022 -0700
    working on porting t2t hub to curated status
  • lines changed 7, context: html, text, full: html, text
    e5d37503f652d47a0d2e5c6a03562cdf6442736b Mon May 30 09:55:25 2022 -0700
    some tweaks to chm13 to get searchTrix to work
• src/hg/makeDb/doc/chm13v2.0userData/build.txt
  • lines changed 6, context: html, text, full: html, text
    4dadcc59eac20a561ddc52cd71ac122813dabc32 Mon May 23 14:40:45 2022 -0700
    change CHM13 repeatmasker to used bed9 itemRgb until bigRmsk bugs are sorted out (Track #29494)
• src/hg/makeDb/doc/chm13v2.0userData/html/t2tRepeatMasker.bigRmsk.html
  • lines changed 488, context: html, text, full: html, text
    4dadcc59eac20a561ddc52cd71ac122813dabc32 Mon May 23 14:40:45 2022 -0700
    change CHM13 repeatmasker to used bed9 itemRgb until bigRmsk bugs are sorted out (Track #29494)
• src/hg/makeDb/doc/chm13v2.0userData/html/t2tRepeatMasker.html
  • lines changed 333, context: html, text, full: html, text
    4dadcc59eac20a561ddc52cd71ac122813dabc32 Mon May 23 14:40:45 2022 -0700
    change CHM13 repeatmasker to used bed9 itemRgb until bigRmsk bugs are sorted out (Track #29494)
• src/hg/makeDb/doc/chm13v2.0userData/trackDb/t2tRepeatMasker.trackDb.txt
  • lines changed 6, context: html, text, full: html, text
    4dadcc59eac20a561ddc52cd71ac122813dabc32 Mon May 23 14:40:45 2022 -0700
    change CHM13 repeatmasker to used bed9 itemRgb until bigRmsk bugs are sorted out (Track #29494)
• src/hg/makeDb/doc/hg19.txt
  • lines changed 4, context: html, text, full: html, text
    4bf8cd5b339e46ed05d34677f0fed28eb2b03463 Thu May 26 17:14:43 2022 -0700
    Setting MTR track to QA ready. Choosing new .ra setting to highlight low values, updating the make script, and improving the desc page. Refs #29152
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    44a3fed1a487ef0bbfb4d7443903661d81822350 Mon May 30 06:36:56 2022 -0700
    adding makedoc for REVEL tracks, refs #29475
• src/hg/makeDb/doc/hg38/genCC.txt
  • lines changed 20, context: html, text, full: html, text
    9eda90a2965a1f62f801718e26fda708bcf7a950 Tue May 24 17:37:59 2022 -0700
    Creating new GenCC annotation track for hg19 and hg38, refs #28166
• src/hg/makeDb/doc/hg38/gtex.txt
  • lines changed 436, context: html, text, full: html, text
    c53ffb9020440066c1badd6b2dede9f187a86658 Thu May 26 16:21:23 2022 -0700
    Added GTEx eQTL DAP-G track, changes to GTEx eQTL CAVIAR track. refs #29511
• src/hg/makeDb/doc/hg38/revel.txt
  • lines changed 7, context: html, text, full: html, text
    44a3fed1a487ef0bbfb4d7443903661d81822350 Mon May 30 06:36:56 2022 -0700
    adding makedoc for REVEL tracks, refs #29475
• src/hg/makeDb/doc/nomLeu3.txt
  • lines changed 43, context: html, text, full: html, text
    4e02ac74b68e5c26a87c9514c977af727f1e3bf5 Thu May 26 12:56:09 2022 -0700
    add ncbiRefSeq genes and cytoBand no redmine
• src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    b1f85e97a18c011f76d888e300b8c6a8cb3cb882 Mon May 23 11:27:26 2022 -0700
    adding Monkeypox virus GCF_000857045.1_ViralProj15142 refs #29484
• src/hg/makeDb/hgTrackDb/hgTrackDb.c
  • lines changed 1, context: html, text, full: html, text
    14374de7f70bbc06bdb97d6a07cd0f896575e9e3 Mon May 23 10:20:13 2022 -0700
    fix weird bug where HTML file didn't exist, but there was a directory of that name
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    05eb41c63af8ccd369f76b022d3cf1faab5543c2 Thu May 26 16:25:07 2022 -0700
    changes to support curated hubs
• src/hg/makeDb/revel/revelToWig-hg19.py
  • lines changed 122, context: html, text, full: html, text
    44a3fed1a487ef0bbfb4d7443903661d81822350 Mon May 30 06:36:56 2022 -0700
    adding makedoc for REVEL tracks, refs #29475
• src/hg/makeDb/revel/revelToWig-hg38.py
  • lines changed 34, context: html, text, full: html, text
    44a3fed1a487ef0bbfb4d7443903661d81822350 Mon May 30 06:36:56 2022 -0700
    adding makedoc for REVEL tracks, refs #29475
• src/hg/makeDb/revel/revelToWig.py
  • lines changed 100, context: html, text, full: html, text
    44a3fed1a487ef0bbfb4d7443903661d81822350 Mon May 30 06:36:56 2022 -0700
    adding makedoc for REVEL tracks, refs #29475
• src/hg/makeDb/scripts/genCC/doGenCC.py
  • lines changed 217, context: html, text, full: html, text
    9eda90a2965a1f62f801718e26fda708bcf7a950 Tue May 24 17:37:59 2022 -0700
    Creating new GenCC annotation track for hg19 and hg38, refs #28166
• src/hg/makeDb/scripts/mtr/buildMTRbedTrack.py
  • lines changed 3, context: html, text, full: html, text
    4bf8cd5b339e46ed05d34677f0fed28eb2b03463 Thu May 26 17:14:43 2022 -0700
    Setting MTR track to QA ready. Choosing new .ra setting to highlight low values, updating the make script, and improving the desc page. Refs #29152
• src/hg/makeDb/scripts/mtr/buildMTRwigTracks.py
  • lines changed 4, context: html, text, full: html, text
    4bf8cd5b339e46ed05d34677f0fed28eb2b03463 Thu May 26 17:14:43 2022 -0700
    Setting MTR track to QA ready. Choosing new .ra setting to highlight low values, updating the make script, and improving the desc page. Refs #29152
• src/hg/makeDb/trackDb/gibbon/nomLeu3/trackDb.ra
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    35fed3b0797e5bd33513b343e9aca7141414f381 Thu May 26 13:12:26 2022 -0700
    adding NCBI RefSeq to nomLeu3 refs #29508
• src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.assembly.html
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    8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
    commit test version of chm13 curated hub
• src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.augustus.html
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    8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
    commit test version of chm13 curated hub
• src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.catLiftOffGenesV1.html
  • lines changed 104, context: html, text, full: html, text
    8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
    commit test version of chm13 curated hub
• src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.censat.html
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    8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
    commit test version of chm13 curated hub
• src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.chainNet.html
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    8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
    commit test version of chm13 curated hub
• src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.clinVar20220313.html
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    8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
    commit test version of chm13 curated hub
• src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.cpgIslands.html
  • lines changed 78, context: html, text, full: html, text
    8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
    commit test version of chm13 curated hub
• src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.dbSNP155.html
  • lines changed 14, context: html, text, full: html, text
    8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
    commit test version of chm13 curated hub
• src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.description.html
  • lines changed 131, context: html, text, full: html, text
    8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
    commit test version of chm13 curated hub
• src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.encode.html
  • lines changed 41, context: html, text, full: html, text
    8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
    commit test version of chm13 curated hub
• src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.gc5Base.html
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    8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
    commit test version of chm13 curated hub
• src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.gwasSNPs2022-03-08.html
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    8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
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• src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.hgCactus.html
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    8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
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• src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.hgLiftOver.html
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    8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
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    8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
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    8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
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• src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.xenoRefGene.html
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    e5d37503f652d47a0d2e5c6a03562cdf6442736b Mon May 30 09:55:25 2022 -0700
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    2b1f91e141939f73201a8acd041de4c572baef99 Wed May 25 18:01:30 2022 -0700
    Expanding MTR scores description, and touching up HMC and JARVIS. Refs #29152
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    4bf8cd5b339e46ed05d34677f0fed28eb2b03463 Thu May 26 17:14:43 2022 -0700
    Setting MTR track to QA ready. Choosing new .ra setting to highlight low values, updating the make script, and improving the desc page. Refs #29152
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    4bf8cd5b339e46ed05d34677f0fed28eb2b03463 Thu May 26 17:14:43 2022 -0700
    Setting MTR track to QA ready. Choosing new .ra setting to highlight low values, updating the make script, and improving the desc page. Refs #29152
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    9eda90a2965a1f62f801718e26fda708bcf7a950 Tue May 24 17:37:59 2022 -0700
    Creating new GenCC annotation track for hg19 and hg38, refs #28166
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    9eda90a2965a1f62f801718e26fda708bcf7a950 Tue May 24 17:37:59 2022 -0700
    Creating new GenCC annotation track for hg19 and hg38, refs #28166
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    5999a4947409f5c146359b0a2ddda404941cd591 Fri May 27 14:37:19 2022 -0700
    Fixing cons100way which had labeled equCab3 when it was actually built with equCab2. This caused some funky behavior when you clicked into the alignments. Refs #29395
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    c53ffb9020440066c1badd6b2dede9f187a86658 Thu May 26 16:21:23 2022 -0700
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    c53ffb9020440066c1badd6b2dede9f187a86658 Thu May 26 16:21:23 2022 -0700
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    c53ffb9020440066c1badd6b2dede9f187a86658 Thu May 26 16:21:23 2022 -0700
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    4f61f1d54bd67ed3e434a28da2da5128b86288cb Fri May 27 10:22:54 2022 -0700
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    5999a4947409f5c146359b0a2ddda404941cd591 Fri May 27 14:37:19 2022 -0700
    Fixing cons100way which had labeled equCab3 when it was actually built with equCab2. This caused some funky behavior when you clicked into the alignments. Refs #29395
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    c53ffb9020440066c1badd6b2dede9f187a86658 Thu May 26 16:21:23 2022 -0700
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    4bf8cd5b339e46ed05d34677f0fed28eb2b03463 Thu May 26 17:14:43 2022 -0700
    Setting MTR track to QA ready. Choosing new .ra setting to highlight low values, updating the make script, and improving the desc page. Refs #29152
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    30f12992d85965a0ef8cb9238a3f292cb584cacf Thu May 26 20:19:56 2022 -0700
    Fixing min value to 0.001 since the lowest in that field is 0.003, a decimal is needed since having just a 0 also displayed items with no value in that field. Refs #29152
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    c58182a80ec3c032b1c8613db4bd168aaeb7a543 Mon May 30 02:36:53 2022 -0700
    fixing revel docs, after great QA remarks, refs #29475
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    19e0a3483122ba218641fe56647d5fff0f015828 Tue May 24 02:28:32 2022 -0700
    tiny change to revel trackdb
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    c58182a80ec3c032b1c8613db4bd168aaeb7a543 Mon May 30 02:36:53 2022 -0700
    fixing revel docs, after great QA remarks, refs #29475
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    9eda90a2965a1f62f801718e26fda708bcf7a950 Tue May 24 17:37:59 2022 -0700
    Creating new GenCC annotation track for hg19 and hg38, refs #28166
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    05eb41c63af8ccd369f76b022d3cf1faab5543c2 Thu May 26 16:25:07 2022 -0700
    changes to support curated hubs
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    05eb41c63af8ccd369f76b022d3cf1faab5543c2 Thu May 26 16:25:07 2022 -0700
    changes to support curated hubs
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    eb0b82122000432228d838bcd9755085f40278f9 Mon May 23 17:21:24 2022 -0700
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    eb0b82122000432228d838bcd9755085f40278f9 Mon May 23 17:21:24 2022 -0700
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    1f41563dd0ee21f72645c1588c7a9482ecdcda49 Tue May 24 01:48:50 2022 -0700
    bugfixes to nat selection track on wuhCor1, refs #29478
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    c3e7dd2ed09c26a4f93b260c71578064301fcd19 Fri May 27 15:13:25 2022 -0700
    Making small tweaks to wuhCor1 NS track update refs #29478
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    1f41563dd0ee21f72645c1588c7a9482ecdcda49 Tue May 24 01:48:50 2022 -0700
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    c3e7dd2ed09c26a4f93b260c71578064301fcd19 Fri May 27 15:13:25 2022 -0700
    Making small tweaks to wuhCor1 NS track update refs #29478
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    05eb41c63af8ccd369f76b022d3cf1faab5543c2 Thu May 26 16:25:07 2022 -0700
    changes to support curated hubs
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    a63596012d328a6333a06bdd640666dd336d065a Mon May 23 11:30:49 2022 -0700
    Add a type line check to hubCheck, refs #28350, #13428
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    a7d0df2dbc1d8fded14f2631b46d47851ded1b40 Mon May 23 12:04:32 2022 -0700
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    a7d0df2dbc1d8fded14f2631b46d47851ded1b40 Mon May 23 12:04:32 2022 -0700
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    a63596012d328a6333a06bdd640666dd336d065a Mon May 23 11:30:49 2022 -0700
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    a7d0df2dbc1d8fded14f2631b46d47851ded1b40 Mon May 23 12:04:32 2022 -0700
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    a7d0df2dbc1d8fded14f2631b46d47851ded1b40 Mon May 23 12:04:32 2022 -0700
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    a63596012d328a6333a06bdd640666dd336d065a Mon May 23 11:30:49 2022 -0700
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    a63596012d328a6333a06bdd640666dd336d065a Mon May 23 11:30:49 2022 -0700
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    a7d0df2dbc1d8fded14f2631b46d47851ded1b40 Mon May 23 12:04:32 2022 -0700
    Add a test for bogus subgroup membership in hubCheck, refs #29389, #13428
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    da8bfb04cb9e30d67e9fe11676583b6a067a7e4e Tue May 31 08:31:08 2022 -0700
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