All File Changes

v464_preview to v464_preview2 (2024-04-08 to 2024-04-15) v464

• confs/asia.hg.conf
  • lines changed 3, context: html, text, full: html, text
    d8834bfcfdff3b13d88008ba16c159c07333c0f2 Sun Apr 14 01:11:21 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/euro.hg.conf
  • lines changed 3, context: html, text, full: html, text
    d8834bfcfdff3b13d88008ba16c159c07333c0f2 Sun Apr 14 01:11:21 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/hgwdev.hg.conf
  • lines changed 2, context: html, text, full: html, text
    d8834bfcfdff3b13d88008ba16c159c07333c0f2 Sun Apr 14 01:11:21 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/rr.hg.conf
  • lines changed 3, context: html, text, full: html, text
    d8834bfcfdff3b13d88008ba16c159c07333c0f2 Sun Apr 14 01:11:21 2024 -0700
    Installing updated hg.conf files from UCSC servers
• src/hg/hgTracks/hgTracks.c
  • lines changed 7, context: html, text, full: html, text
    3d4fe14b34d3a6eb335d4bb228d574300c9324e6 Thu Apr 11 15:05:01 2024 -0700
    Revert "changing more info link such that it doesnt change the alignment anymore, refs #33065" This reverts commit 5bf315f014b13b0bfb51d268264297b06f370b37.
  • lines changed 4, context: html, text, full: html, text
    3aa8aa0bc9bd6ca496cd2edec004b32891b901f0 Thu Apr 11 16:39:58 2024 -0700
    Revert "make move at least one bp, refs #23343" This reverts commit 71dd1c30ee6ab2807a14ef4f3beacb1b4c3ca21f.
• src/hg/hgc/mgcClick.c
  • lines changed 69, context: html, text, full: html, text
    e8499e560e60e115ca15069b9eadb36f01a7614d Sat Apr 13 09:45:15 2024 -0700
    delete dead links for MGC/ORFeome
• src/hg/htdocs/goldenPath/help/docker.html
  • lines changed 49, context: html, text, full: html, text
    ffadd5a6ca32337c0f6eaaeefe8ef81aa47578c4 Mon Apr 8 12:53:32 2024 -0700
    Adding a Changing the default Genome Browser options section and made more edits to the docker page, refs #27056
• src/hg/js/hgSearch.js
  • lines changed 114, context: html, text, full: html, text
    391090d9d977b18dd2f8c2d6817632dab6ed6700 Mon Apr 8 16:17:54 2024 -0700
    hgSearch javascript optimizations: avoid as many innerHTML calls and string += as possible; instead of printing results 11-500 for a category with display none, don't print them at all and just have a javascript function print them when they are asked for, refs Max meeting and code review #32678
• src/hg/js/utils.js
  • lines changed 9, context: html, text, full: html, text
    3336248e618a25a2b6b4ef45325ebd5ba04b542c Mon Apr 15 13:55:23 2024 -0700
    Make the tooltip messages about basic genome browser function like 'click to drag' disappear, refs Ana
• src/hg/makeDb/doc/hg38/hg38.txt
  • lines changed 10, context: html, text, full: html, text
    643e7a97358b25e2180c4dbfc64ff4aa2bb6e85d Mon Apr 8 20:28:52 2024 -0700
    rebuild hg38.chromAlias.bb
• src/hg/makeDb/doc/legacyAsmHub/promoted.list
  • lines changed 2, context: html, text, full: html, text
    559c424924872e77ffed0f6646086ad62f888c27 Fri Apr 12 20:04:25 2024 -0700
    the promoted list for legacy no redmine
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    b6bf1e9ac86814b3f85b9bb25ac70351c4c10940 Fri Apr 12 18:49:28 2024 -0700
    adding GRCr8 again refs #29545
• src/hg/makeDb/doc/mgc-orfeome.txt
  • lines changed 46, context: html, text, full: html, text
    1f8eb9eed9dc2b3541cc190331541757d183281f Sat Apr 13 09:23:37 2024 -0700
    combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    1f8eb9eed9dc2b3541cc190331541757d183281f Sat Apr 13 09:23:37 2024 -0700
    combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827
• src/hg/makeDb/trackDb/human/hg38/mane.ra
  • lines changed 1, context: html, text, full: html, text
    8b6d50ba104bee8457fcd12f6b1d31507cc89a34 Wed Apr 10 11:57:12 2024 -0700
    take out repeated word
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    1f8eb9eed9dc2b3541cc190331541757d183281f Sat Apr 13 09:23:37 2024 -0700
    combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827
• src/hg/makeDb/trackDb/mgcFullMrna.html
  • lines changed 2, context: html, text, full: html, text
    1f8eb9eed9dc2b3541cc190331541757d183281f Sat Apr 13 09:23:37 2024 -0700
    combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827
• src/hg/makeDb/trackDb/mgcGenes.html
  • lines changed 49, context: html, text, full: html, text
    1f8eb9eed9dc2b3541cc190331541757d183281f Sat Apr 13 09:23:37 2024 -0700
    combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827
• src/hg/makeDb/trackDb/mgcOrfeomeMrna.html
  • lines changed 72, context: html, text, full: html, text
    1f8eb9eed9dc2b3541cc190331541757d183281f Sat Apr 13 09:23:37 2024 -0700
    combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    1f8eb9eed9dc2b3541cc190331541757d183281f Sat Apr 13 09:23:37 2024 -0700
    combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827
• src/hg/makeDb/trackDb/orfeomeGenes.html
  • lines changed 34, context: html, text, full: html, text
    1f8eb9eed9dc2b3541cc190331541757d183281f Sat Apr 13 09:23:37 2024 -0700
    combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827
• src/hg/makeDb/trackDb/orfeomeMrna.html
  • lines changed 2, context: html, text, full: html, text
    1f8eb9eed9dc2b3541cc190331541757d183281f Sat Apr 13 09:23:37 2024 -0700
    combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827
• src/hg/makeDb/trackDb/trackDb.genbank.ra
  • lines changed 35, context: html, text, full: html, text
    1f8eb9eed9dc2b3541cc190331541757d183281f Sat Apr 13 09:23:37 2024 -0700
    combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827
• src/hg/makeDb/trackDb/trackDb.mgc-orfeome.ra
  • lines changed 54, context: html, text, full: html, text
    1f8eb9eed9dc2b3541cc190331541757d183281f Sat Apr 13 09:23:37 2024 -0700
    combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827
• src/hg/utils/otto/clinvar/clinvarSubLolly
  • lines changed 5, context: html, text, full: html, text
    8e83d393803c38246d8f3f7082ed0c5ae1af066c Fri Apr 12 13:12:40 2024 -0700
    Max changed the file format so clinvarSubLolly had to change too. Woe be unto the poor users who depend on this format
• src/inc/genoFind.h
  • lines changed 1, context: html, text, full: html, text
    6cfd42b97eaf9b5508e4de18b809af7e905b63fa Tue Apr 9 09:25:01 2024 -0700
    had forgotten to update blat version number when dynamic blat was finished
• src/utils/bigBedInfo/bigBedInfo.c
  • lines changed 24, context: html, text, full: html, text
    f58379c1b0f0ee95e1bd0a6d2d59c8994e25b370 Mon Apr 8 19:54:35 2024 -0700
    added option -asOut to bigBedInfo to output the autoSql only for reuse
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    691c6a4acb2d4f3f5de44d5ed0b940af6459f6fa Mon Apr 15 15:19:56 2024 -0700
    v464 preview2, refs #33450

• lines changed: 608
• files changed: 29