Commits for markd

v464_preview to v464_preview2 (2024-04-08 to 2024-04-15) v464

f58379c1b0f0ee95e1bd0a6d2d59c8994e25b370 Mon Apr 8 19:54:35 2024 -0700

• added option -asOut to bigBedInfo to output the autoSql only for reuse
  • src/utils/bigBedInfo/bigBedInfo.c - lines changed 24, context: html, text, full: html, text

643e7a97358b25e2180c4dbfc64ff4aa2bb6e85d Mon Apr 8 20:28:52 2024 -0700

• rebuild hg38.chromAlias.bb
  • src/hg/makeDb/doc/hg38/hg38.txt - lines changed 10, context: html, text, full: html, text

6cfd42b97eaf9b5508e4de18b809af7e905b63fa Tue Apr 9 09:25:01 2024 -0700

• had forgotten to update blat version number when dynamic blat was finished
  • src/inc/genoFind.h - lines changed 1, context: html, text, full: html, text

1f8eb9eed9dc2b3541cc190331541757d183281f Sat Apr 13 09:23:37 2024 -0700

• combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827
  • src/hg/makeDb/doc/mgc-orfeome.txt - lines changed 46, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mgcFullMrna.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mgcGenes.html - lines changed 49, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mgcOrfeomeMrna.html - lines changed 72, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orfeomeGenes.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orfeomeMrna.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.genbank.ra - lines changed 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.mgc-orfeome.ra - lines changed 54, context: html, text, full: html, text

e8499e560e60e115ca15069b9eadb36f01a7614d Sat Apr 13 09:45:15 2024 -0700

• delete dead links for MGC/ORFeome
  • src/hg/hgc/mgcClick.c - lines changed 69, context: html, text, full: html, text