All File Changes

v385_preview to v385_preview2 (2019-07-08 to 2019-07-15) v385

• src/hg/cirm/cdw/cdwRenameDataset/cdwRenameDataset.c
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    35da6d0448c90196c627302cc1c33dc0e38bb74c Wed Jul 10 11:44:46 2019 -0700
    Tightening up sql query to find dataset so that it doesn't mess up having both 2019yeoRna and yeoRna.
• src/hg/hgc/hgc.c
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    26dfab729803a710418a1d9af7b6c14ceeb2a5de Wed Jul 10 15:30:14 2019 -0700
    Fixing buffer overflow: mm10, ccdsGene, CCDS25925.1. no redmine
• src/hg/htdocs/ENCODE/FAQ/index.html
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    bde35bf9d06a82fa4d60fcf3259f43259a93b0c5 Tue Jul 9 16:11:04 2019 -0700
    Swapping MySQL to MariaDB in docs, refs #23597
• src/hg/htdocs/FAQ/FAQdownloads.html
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    01e223245a85e1ae6d1f2e914c64367cfd006ea9 Tue Jul 9 16:00:29 2019 -0700
    Changing MySQL to MariaDB in documentation, refs #23597
• src/hg/htdocs/FAQ/FAQgenes.html
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    fae1d301198673ede88229892fe5d7bbe76bf3ff Mon Jul 8 11:49:12 2019 -0700
    adding mouse to gencode section in the genes FAQ, no redmine ticket, this came up during a group meeting
• src/hg/htdocs/Neandertal/index.html
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    bde35bf9d06a82fa4d60fcf3259f43259a93b0c5 Tue Jul 9 16:11:04 2019 -0700
    Swapping MySQL to MariaDB in docs, refs #23597
• src/hg/htdocs/goldenPath/help/gbib.html
  • lines changed 9, context: html, text, full: html, text
    09293bd99cefe2305bb7aeb6b8c6f4e537a95921 Wed Jul 10 09:42:07 2019 -0700
    Switching MySQL mentions with MariaDB, refs #23597
• src/hg/htdocs/goldenPath/help/hgGeneGraph.html
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    5357f43c35e9cfb7bb2fae897eab6286954865c1 Wed Jul 10 11:33:53 2019 -0700
    Switching MySQL to MariaDB where appropriate in the documentation, refs #23597
• src/hg/htdocs/goldenPath/help/hgTablesHelp.html
  • lines changed 4, context: html, text, full: html, text
    5357f43c35e9cfb7bb2fae897eab6286954865c1 Wed Jul 10 11:33:53 2019 -0700
    Switching MySQL to MariaDB where appropriate in the documentation, refs #23597
• src/hg/htdocs/goldenPath/help/hgTracksHelp.html
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    5357f43c35e9cfb7bb2fae897eab6286954865c1 Wed Jul 10 11:33:53 2019 -0700
    Switching MySQL to MariaDB where appropriate in the documentation, refs #23597
• src/hg/htdocs/goldenPath/help/mysql.html
  • lines changed 12, context: html, text, full: html, text
    c1fdd27f529b1e579d230e8f66a38b54baa605e2 Mon Jul 8 15:55:31 2019 -0700
    Changing MySQL to MariaDB in htdocs, #23597
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    2da3f9dc24645c6ece32631dd7313cf7cd26991c Tue Jul 9 11:30:20 2019 -0700
    Switching MySQL mentions with MariaDB in mysql.html, refs #23597
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    bde35bf9d06a82fa4d60fcf3259f43259a93b0c5 Tue Jul 9 16:11:04 2019 -0700
    Swapping MySQL to MariaDB in docs, refs #23597
• src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html
  • lines changed 2, context: html, text, full: html, text
    5357f43c35e9cfb7bb2fae897eab6286954865c1 Wed Jul 10 11:33:53 2019 -0700
    Switching MySQL to MariaDB where appropriate in the documentation, refs #23597
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 18, context: html, text, full: html, text
    3dc3896e5b42dae8c1c50c4a8ddc46ffeab3bf4f Tue Jul 9 13:54:02 2019 -0700
    adding crisprAll announcements #23514
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    359efa2a6835490308f7972e8b02a4d25f892e33 Tue Jul 9 15:02:59 2019 -0700
    Making link relative #23514
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    3ed505903284ad261bd78055097acfb1db417f45 Tue Jul 9 15:23:04 2019 -0700
    Making links relative #23514
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    0eb7d962631fc3ecd7d3987c84f134d8565a5de4 Tue Jul 9 15:41:40 2019 -0700
    Fixing bad assembly id #23514
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    01e223245a85e1ae6d1f2e914c64367cfd006ea9 Tue Jul 9 16:00:29 2019 -0700
    Changing MySQL to MariaDB in documentation, refs #23597
  • lines changed 7, context: html, text, full: html, text
    57a5703fb48a7708d61b86afc42e4136c1762f22 Fri Jul 12 15:56:37 2019 -0700
    Swapping MySQL for MariaDB on newsarch.html, refs #23597
• src/hg/htdocs/images/crisprAll.png
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    dcf8a655c7e54a450e98f344d638f342c99fba3d Tue Jul 9 09:51:58 2019 -0700
    Adding an image for crisprAll announcement #23514
• src/hg/htdocs/indexNews.html
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    3dc3896e5b42dae8c1c50c4a8ddc46ffeab3bf4f Tue Jul 9 13:54:02 2019 -0700
    adding crisprAll announcements #23514
• src/hg/hubApi/apiUtils.c
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
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    bc41dae7c763f008e8773bcbe1a534d7d54808ce Wed Jul 10 17:07:11 2019 -0700
    add error 206 Partial Content with maxItems limit reached refs #23589
• src/hg/hubApi/dataApi.h
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
  • lines changed 2, context: html, text, full: html, text
    bc41dae7c763f008e8773bcbe1a534d7d54808ce Wed Jul 10 17:07:11 2019 -0700
    add error 206 Partial Content with maxItems limit reached refs #23589
• src/hg/hubApi/getData.c
  • lines changed 17, context: html, text, full: html, text
    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/hubApi.c
  • lines changed 3, context: html, text, full: html, text
    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/altGraphX.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/barChart.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/chain.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/ctgPos.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/expRatio.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/factorSource.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/interact.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/netAlign.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/peptideMapping.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/pgSnp.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/test39.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/test40.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/test8.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/wig01.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/wig02.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/wig03.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/wig04.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/hubApi/tests/expected/wig13.gz
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    b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700
    correctly idenfity chrom and chromStart columns in any specified database table refs #23589
• src/hg/lib/cartTrackDb.c
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    2aaad2b66e35bc2bef4757e4f10829d4694be059 Tue Jul 9 11:40:23 2019 -0700
    More conservative approach, from Angie code review. refs #23744
• src/hg/lib/hui.c
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    0e280b73b99c652073cbd4a60bb9ffbc36a9370b Tue Jul 9 09:58:15 2019 -0700
    Forgot subtrackColor as an automatic subtrack grouping
• src/hg/makeDb/doc/hg38/lastzRuns.txt
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    3da24c002ed1f1bba8eab282fccaf194ac80b1fe Tue Jul 9 09:28:39 2019 -0700
    lastz chainNet to regenRn0 and rheMac10 refs #21579 #23771
• src/hg/makeDb/doc/mm10.txt
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    53c0ef5df5bee7978a6d37a401190471e097c689 Mon Jul 8 15:20:16 2019 -0700
    lastz chainNet to regenRn0 and rheMac10 refs #23771 #21579
• src/hg/makeDb/outside/gencode/gencodeLoad.mk
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    b8b9d9c2a21c34a52d876df57e215c53722e53e6 Wed Jul 10 20:02:51 2019 -0700
    fixed problem loading gencode 2way consensus pseudogenes from GFF3
• src/hg/makeDb/trackDb/chainCi2.html
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    09d59939ea06d0bf33bdcdf5d84aa3f349586571 Tue Jul 9 11:34:22 2019 -0700
    Updating http to https for strPur2, uiLinks cronjob.
• src/hg/makeDb/trackDb/chimp/bacEndPairs.html
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    894bef193c60e6b0076536bfbdb2cf17004379df Mon Jul 8 12:34:44 2019 -0700
    Updating http to https for panTro1, uiLinks cronjob.
• src/hg/makeDb/trackDb/chimp/panTro1/axtNetHg16.html
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    894bef193c60e6b0076536bfbdb2cf17004379df Mon Jul 8 12:34:44 2019 -0700
    Updating http to https for panTro1, uiLinks cronjob.
• src/hg/makeDb/trackDb/crisprAll.html
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    2e1806a6ac3094a2653e9276dd60746cabec0484 Wed Jul 10 17:11:50 2019 -0700
    Adding note about positional data only #23803
• src/hg/makeDb/trackDb/gorilla/gorGor3/cons11way.html
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    953908ecab5aebe565689d179fdee1da5c22ff8b Mon Jul 8 12:45:30 2019 -0700
    Updating http to http for gorGor3, uiLinks cronjob.
• src/hg/makeDb/trackDb/horse/equCab3/trackDb.ra
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    48ed9350db90624bc938870bf18a603dfdf7b8f7 Wed Jul 10 09:43:38 2019 -0700
    Changing horse track visibility, adding chain/net tracks, refs #21223
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    d1f6fe5efc6c80a3f9ee51a70924968fa7dcb927 Fri Jul 12 14:15:25 2019 -0700
    Editing conservation trackDb.ra files to swap equCab2 -> equCab3, refs #21223
• src/hg/makeDb/trackDb/human/chainNetPrimate.ra
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    ed89f043c1f6fd43c8839f0f2f0a3bc5a9698178 Tue Jul 9 10:24:56 2019 -0700
    adding rheMac10 to the composite chainNet refs #23771
• src/hg/makeDb/trackDb/human/chainNetRheMac10.ra
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    ed89f043c1f6fd43c8839f0f2f0a3bc5a9698178 Tue Jul 9 10:24:56 2019 -0700
    adding rheMac10 to the composite chainNet refs #23771
• src/hg/makeDb/trackDb/human/chainNetRheMac8.ra
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    ed89f043c1f6fd43c8839f0f2f0a3bc5a9698178 Tue Jul 9 10:24:56 2019 -0700
    adding rheMac10 to the composite chainNet refs #23771
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
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    2391c91c94e8a85b3c6aa29e55a220acdd7e68fb Wed Jul 10 09:44:55 2019 -0700
    Adding pennant icon to the dgvGold track, refs #23371
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgTfbsUniform.ra
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    9a298b8980d060dae9fbfb93e7313f95e610e095 Tue Jul 9 15:10:28 2019 -0700
    Removing the unused pennantIcon none variables #23403
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release3.ra
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    9a298b8980d060dae9fbfb93e7313f95e610e095 Tue Jul 9 15:10:28 2019 -0700
    Removing the unused pennantIcon none variables #23403
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.release2.ra
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    9a298b8980d060dae9fbfb93e7313f95e610e095 Tue Jul 9 15:10:28 2019 -0700
    Removing the unused pennantIcon none variables #23403
• src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.dev.ra
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    9a298b8980d060dae9fbfb93e7313f95e610e095 Tue Jul 9 15:10:28 2019 -0700
    Removing the unused pennantIcon none variables #23403
• src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.new.ra
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    9a298b8980d060dae9fbfb93e7313f95e610e095 Tue Jul 9 15:10:28 2019 -0700
    Removing the unused pennantIcon none variables #23403
• src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra
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    9a298b8980d060dae9fbfb93e7313f95e610e095 Tue Jul 9 15:10:28 2019 -0700
    Removing the unused pennantIcon none variables #23403
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release3.ra
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    9a298b8980d060dae9fbfb93e7313f95e610e095 Tue Jul 9 15:10:28 2019 -0700
    Removing the unused pennantIcon none variables #23403
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUchicagoTfbs.release2.ra
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    9a298b8980d060dae9fbfb93e7313f95e610e095 Tue Jul 9 15:10:28 2019 -0700
    Removing the unused pennantIcon none variables #23403
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUmassWengTfbsValid.ra
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    9a298b8980d060dae9fbfb93e7313f95e610e095 Tue Jul 9 15:10:28 2019 -0700
    Removing the unused pennantIcon none variables #23403
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release4.ra
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    9a298b8980d060dae9fbfb93e7313f95e610e095 Tue Jul 9 15:10:28 2019 -0700
    Removing the unused pennantIcon none variables #23403
• src/hg/makeDb/trackDb/human/hg38/cons100way.html
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    d1f6fe5efc6c80a3f9ee51a70924968fa7dcb927 Fri Jul 12 14:15:25 2019 -0700
    Editing conservation trackDb.ra files to swap equCab2 -> equCab3, refs #21223
• src/hg/makeDb/trackDb/human/hg38/trackDb.100way.ra
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    d1f6fe5efc6c80a3f9ee51a70924968fa7dcb927 Fri Jul 12 14:15:25 2019 -0700
    Editing conservation trackDb.ra files to swap equCab2 -> equCab3, refs #21223
• src/hg/makeDb/trackDb/human/hg38/trackDb.145way.ra
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    d1f6fe5efc6c80a3f9ee51a70924968fa7dcb927 Fri Jul 12 14:15:25 2019 -0700
    Editing conservation trackDb.ra files to swap equCab2 -> equCab3, refs #21223
• src/hg/makeDb/trackDb/mouse/mm10/cons60way.html
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    d1f6fe5efc6c80a3f9ee51a70924968fa7dcb927 Fri Jul 12 14:15:25 2019 -0700
    Editing conservation trackDb.ra files to swap equCab2 -> equCab3, refs #21223
• src/hg/makeDb/trackDb/mouse/mm10/encode3RenChromHmm.html
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    6d86cee4bd5efe208afd915ca21f465d7675d7bc Thu Jul 11 09:28:14 2019 -0700
    Skeleton track descriptions for ENCODE3 mouse histone tracks. refs #23693
• src/hg/makeDb/trackDb/mouse/mm10/encode3RenHistone.html
  • lines changed 65, context: html, text, full: html, text
    6d86cee4bd5efe208afd915ca21f465d7675d7bc Thu Jul 11 09:28:14 2019 -0700
    Skeleton track descriptions for ENCODE3 mouse histone tracks. refs #23693
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.60way.ra
  • lines changed 2, context: html, text, full: html, text
    d1f6fe5efc6c80a3f9ee51a70924968fa7dcb927 Fri Jul 12 14:15:25 2019 -0700
    Editing conservation trackDb.ra files to swap equCab2 -> equCab3, refs #21223
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.chromHmm.ra
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    9349849e2b9c6f65ef66b808d61f298a60516c34 Wed Jul 10 17:32:45 2019 -0700
    First cut ENCODE 3 histones and chromHmm tracks from Ren lab. refs #23693
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.encode3.ra
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    9349849e2b9c6f65ef66b808d61f298a60516c34 Wed Jul 10 17:32:45 2019 -0700
    First cut ENCODE 3 histones and chromHmm tracks from Ren lab. refs #23693
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.gencode.ra
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    cf348ff41abbaeac637569529d037e8c28376aae Thu Jul 11 14:56:47 2019 -0700
    added GENCODE VM22 to supertrack
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.histones.ra
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    9349849e2b9c6f65ef66b808d61f298a60516c34 Wed Jul 10 17:32:45 2019 -0700
    First cut ENCODE 3 histones and chromHmm tracks from Ren lab. refs #23693
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    9410b160260e1edad984569c06e3fcda7b0b993e Mon Jul 8 15:42:47 2019 -0700
    Testing mouse histone track. refs #23693
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM21.html
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    194efd4a95a8ac1704d5283bfd70fb616002bed8 Wed Jul 10 17:13:21 2019 -0700
    Making html edits for gencode VM21 #23792
• src/hg/makeDb/trackDb/netCi2.html
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    09d59939ea06d0bf33bdcdf5d84aa3f349586571 Tue Jul 9 11:34:22 2019 -0700
    Updating http to https for strPur2, uiLinks cronjob.
• src/hg/makeDb/trackDb/squirt/gap.html
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    84f1ed06afb5516166098b1cdd4de2add2622fe9 Mon Jul 15 09:13:41 2019 -0700
    Updating http to https for ci2, uiLinks cronjob.
• src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra
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    9e3fea3eabab398560715780a111a3fd2c6eac75 Tue Jul 9 10:04:59 2019 -0700
    lastz chainNet to regenRn0 and rheMac10 refs #21579 #23771
• src/hg/makeDb/trackDb/trackDb.chainNet.ra
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    9e3fea3eabab398560715780a111a3fd2c6eac75 Tue Jul 9 10:04:59 2019 -0700
    lastz chainNet to regenRn0 and rheMac10 refs #21579 #23771
• src/hg/makeDb/trackDb/trackDb.ra
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    ee2923ef8609c9efff782910edd81faa351d4a48 Mon Jul 8 14:28:58 2019 -0700
    Adding release tags to hide the crispr10K in favor of crisprAll #23514
• src/hg/makeDb/trackDb/transMapTailerV5.html
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    17ebf3b49d9a9f89f29c9580be6d98f705190cd2 Wed Jul 10 09:00:55 2019 -0700
    Small changes from CR #23802
• src/hg/makeDb/trackDb/transMapV5.html
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    17ebf3b49d9a9f89f29c9580be6d98f705190cd2 Wed Jul 10 09:00:55 2019 -0700
    Small changes from CR #23802
• src/hg/makeDb/trackDb/wgEncodeGencodeCredits1.shared.html
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    194efd4a95a8ac1704d5283bfd70fb616002bed8 Wed Jul 10 17:13:21 2019 -0700
    Making html edits for gencode VM21 #23792
• src/hg/makeDb/trackDb/wgEncodeGencodeDisplay1.shared.html
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    194efd4a95a8ac1704d5283bfd70fb616002bed8 Wed Jul 10 17:13:21 2019 -0700
    Making html edits for gencode VM21 #23792
• src/hg/makeDb/trackDb/zebrafish/danRer3/chainSelf.html
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    f20203638f37e86f0b443d00ce98479d8a7ba997 Fri Jul 12 09:51:03 2019 -0700
    Updating http to https for danRer3, uiLinks cronjob.
• src/hg/makeDb/trackDb/zebrafish/danRer3/multiz5way.html
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    f20203638f37e86f0b443d00ce98479d8a7ba997 Fri Jul 12 09:51:03 2019 -0700
    Updating http to https for danRer3, uiLinks cronjob.
• src/hg/makeDb/trackDb/zebrafish/danRer3/rhMap.html
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    f20203638f37e86f0b443d00ce98479d8a7ba997 Fri Jul 12 09:51:03 2019 -0700
    Updating http to https for danRer3, uiLinks cronjob.
• src/hg/utils/gff3ToGenePred/tests/expected/transcriptOnlyTest.gp
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    49bab6dec8d813e0db3902b7e8f1e9370be03bbd Fri Jul 12 10:17:20 2019 -0700
    forgotten added of test results
• src/hg/utils/gff3ToGenePred/tests/input/transcriptOnly.gff3
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    c6753d13e623ebd80e64ebff2296f7d596695442 Wed Jul 10 19:46:37 2019 -0700
    added test case for transcipt-only annotations
• src/hg/utils/gff3ToGenePred/tests/makefile
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    c6753d13e623ebd80e64ebff2296f7d596695442 Wed Jul 10 19:46:37 2019 -0700
    added test case for transcipt-only annotations
• src/inc/hash.h
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    15fca87535d94ba45c37c8088ffb571dcb024b9e Mon Jul 8 10:31:31 2019 -0700
    Increasing hashMaxSize to 30 to support dbSNP's 650M+ rs IDs. Replaced assert with more informative error message when too-large size is passed in. refs #23283
• src/lib/hash.c
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    15fca87535d94ba45c37c8088ffb571dcb024b9e Mon Jul 8 10:31:31 2019 -0700
    Increasing hashMaxSize to 30 to support dbSNP's 650M+ rs IDs. Replaced assert with more informative error message when too-large size is passed in. refs #23283
• src/utils/bedJoinTabOffset
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    46dc535d3f532f80ada63859bc948ad4af0a72d3 Mon Jul 8 10:27:37 2019 -0700
    Rewrote bedJoinTabOffset in C to handle very large files. Renamed script to bedJoinTabOffset.py . refs #23283 The new C version does not yet support any of the script's command line options.
• src/utils/bedJoinTabOffset.py
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    46dc535d3f532f80ada63859bc948ad4af0a72d3 Mon Jul 8 10:27:37 2019 -0700
    Rewrote bedJoinTabOffset in C to handle very large files. Renamed script to bedJoinTabOffset.py . refs #23283 The new C version does not yet support any of the script's command line options.
• src/utils/bedJoinTabOffset/bedJoinTabOffset.c
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    46dc535d3f532f80ada63859bc948ad4af0a72d3 Mon Jul 8 10:27:37 2019 -0700
    Rewrote bedJoinTabOffset in C to handle very large files. Renamed script to bedJoinTabOffset.py . refs #23283 The new C version does not yet support any of the script's command line options.
• src/utils/bedJoinTabOffset/makefile
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    46dc535d3f532f80ada63859bc948ad4af0a72d3 Mon Jul 8 10:27:37 2019 -0700
    Rewrote bedJoinTabOffset in C to handle very large files. Renamed script to bedJoinTabOffset.py . refs #23283 The new C version does not yet support any of the script's command line options.
• src/utils/makefile
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    46dc535d3f532f80ada63859bc948ad4af0a72d3 Mon Jul 8 10:27:37 2019 -0700
    Rewrote bedJoinTabOffset in C to handle very large files. Renamed script to bedJoinTabOffset.py . refs #23283 The new C version does not yet support any of the script's command line options.
• src/utils/qa/weeklybld/buildEnv.csh
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    c276f82d0378828b34191dd53e2d8127a1486d5d Mon Jul 15 10:27:36 2019 -0700
    v385 preview2, refs #23695

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