All File Changes

v386_preview2 to v386_base (2019-08-05 to 2019-08-12) v386

• confs/euro.hg.conf
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    c3e084da9ee98536a197a59da7c89f5558cdb29d Sun Aug 11 01:12:20 2019 -0700
    Installing updated hg.conf files from UCSC servers
• src/blat/version.doc
  • lines changed 1, context: html, text, full: html, text
    f945af205d2f1cc66a529ebb71fd7907517bf2b5 Fri Aug 9 13:57:01 2019 -0700
    Incrementing blat version to 36x4 for Angies gfServer improved handling of _alts.
• src/gfServer/gfServer.c
  • lines changed 61, context: html, text, full: html, text
    457e1eaee582c512cf6e860884f9f6677c8cf218 Mon Aug 5 15:16:45 2019 -0700
    Added -perSeqMax=file option to gfServer, for assemblies with many alt/fix sequences. refs #23112 gfServer's default maxDnaHits=100 is exceeded easily for transcripts like NM_020535.3 that have clump matches to many spots on chr19 and its dozens of _alts, so only the largest exon matches make the cutoff and we lose the best full transcript alignments. Passing in -perSeqMax with a list of _alt and _fix filename:seq names enables us to apply the limit separately to each alt (maxDnaHits/2 per alt), so full transcript matches are found. There can be many more results for hgBlat to work through, which slows it down, but this should apply only when there are many clump matches to many alts. In the normal case in which a transcript has relatively few hits across the genome, and none to alts, hgBlat's performance is not affected.
• src/hca/fromGeo/geoToHcaStorm/geoToHcaStorm.c
  • lines changed 85, context: html, text, full: html, text
    8a1718c666e29d0d2e3bcd0712cfb5e1ef8202de Tue Aug 6 08:48:11 2019 -0700
    Making it so that the _s in the required fields is optional since it isn't there in the tables that efetch gets.
• src/hca/fromGeo/geoToTagStorm/geoToTagStorm.c
  • lines changed 70, context: html, text, full: html, text
    a53c1529894f2a09cd68e914bee1cc264b9b8d6e Tue Aug 6 08:49:32 2019 -0700
    Adding some of the relation url to accession mapping from the hca code to here, since it is of more general use than just hca.
• src/hg/hgGene/go.c
  • lines changed 38, context: html, text, full: html, text
    aab7eb309928e1ffedf18e8cf017dab5c86cfc08 Thu Aug 8 14:19:17 2019 -0700
    Fixing GO subSection links, refs #23939
  • lines changed 38, context: html, text, full: html, text
    7f734c2f4001eb8fc3738de7cabc0b578b0bfbc7 Fri Aug 9 11:04:43 2019 -0700
    Revert "Fixing GO subSection links, refs #23939" This reverts commit aab7eb309928e1ffedf18e8cf017dab5c86cfc08.
  • lines changed 1, context: html, text, full: html, text
    479ae32f7e18e0656d4708513cceb9c476e0b01c Fri Aug 9 11:57:22 2019 -0700
    change link to GO
• src/hg/hgLogin/hgLogin.c
  • lines changed 2, context: html, text, full: html, text
    3aa2d72c932d17248f69bd2567b84551093f61b5 Wed Aug 7 09:09:32 2019 -0700
    Expanding account acitvation email with additional resources refs #21662 #21880
• src/hg/hgTables/hic.c
  • lines changed 3, context: html, text, full: html, text
    41a9770252865a7968aaa170ed14a713b1e43e1c Mon Aug 12 07:51:02 2019 -0700
    Fixing two bugs in displaying 4DN hic files, refs #22316
• src/hg/hgTracks/hicTrack.c
  • lines changed 6, context: html, text, full: html, text
    41a9770252865a7968aaa170ed14a713b1e43e1c Mon Aug 12 07:51:02 2019 -0700
    Fixing two bugs in displaying 4DN hic files, refs #22316
• src/hg/htdocs/FAQ/FAQblat.html
  • lines changed 1, context: html, text, full: html, text
    574532b972ccb3d1ee900ccfb000782ffd0b6a2d Thu Aug 8 16:07:02 2019 -0700
    Fixing typo for code reviewq #23955
• src/hg/htdocs/cite.html
  • lines changed 7, context: html, text, full: html, text
    da82a299560e0c49c6f05fc8deec6e4299a76e84 Wed Aug 7 09:22:10 2019 -0700
    Adding line on cite.html to encourage people to create sessions instead of copy links refs #20912
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 9, context: html, text, full: html, text
    79886076fd2c39c09bf633d069950ca5e366f112 Tue Aug 6 08:27:42 2019 -0700
    changing the HTML attributes to be lowercase, refs #23954
• src/hg/inc/hic.h
  • lines changed 3, context: html, text, full: html, text
    41a9770252865a7968aaa170ed14a713b1e43e1c Mon Aug 12 07:51:02 2019 -0700
    Fixing two bugs in displaying 4DN hic files, refs #22316
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    4f42ac5eef7748338089fb2fa2621569bdc9f029 Mon Aug 12 10:03:08 2019 -0700
    New version number v386
• src/hg/lib/customFactory.c
  • lines changed 1, context: html, text, full: html, text
    41a9770252865a7968aaa170ed14a713b1e43e1c Mon Aug 12 07:51:02 2019 -0700
    Fixing two bugs in displaying 4DN hic files, refs #22316
• src/hg/lib/hic.c
  • lines changed 4, context: html, text, full: html, text
    41a9770252865a7968aaa170ed14a713b1e43e1c Mon Aug 12 07:51:02 2019 -0700
    Fixing two bugs in displaying 4DN hic files, refs #22316
• src/hg/lib/hicUi.c
  • lines changed 1, context: html, text, full: html, text
    41a9770252865a7968aaa170ed14a713b1e43e1c Mon Aug 12 07:51:02 2019 -0700
    Fixing two bugs in displaying 4DN hic files, refs #22316
• src/hg/lib/hubStatus.sql
  • lines changed 2, context: html, text, full: html, text
    e0695f8b8a9fe1dd2c1bbf1ed9dd4528c84e7036 Mon Aug 5 11:54:55 2019 -0700
    add an index on hubUrl in hubStatus table
• src/hg/lib/straw/straw.cpp
  • lines changed 4, context: html, text, full: html, text
    2d804382e0be1bb3d7154f650275c7daa14beb4d Mon Aug 12 07:43:51 2019 -0700
    Making a hic error message more helpful, refs #22316
• src/hg/lib/trackDbCache.c
  • lines changed 2, context: html, text, full: html, text
    077f2e2085bc1e0c62d135980b46ae95683853aa Mon Aug 5 15:29:05 2019 -0700
    need to save the viewHash in the tdb cache
• src/hg/makeDb/doc/VGP/bigDensity.pl
  • lines changed 99, context: html, text, full: html, text
    06f2e5b1d44ec0f161e534274c848b6b32fa0200 Mon Aug 5 15:53:52 2019 -0700
    working up a gene density profile to find default position refs #23734
• src/hg/makeDb/doc/VGP/mkAsmStats.pl
  • lines changed 1, context: html, text, full: html, text
    22a67b8eddff877e9265906cfbc4df5a41c3e0db Mon Aug 5 12:01:54 2019 -0700
    Pointing hard-coded links to hgdownload refs #23734
• src/hg/makeDb/doc/VGP/mkHubIndex.pl
  • lines changed 6, context: html, text, full: html, text
    22a67b8eddff877e9265906cfbc4df5a41c3e0db Mon Aug 5 12:01:54 2019 -0700
    Pointing hard-coded links to hgdownload refs #23734
• src/hg/makeDb/schema/all.joiner
  • lines changed 436, context: html, text, full: html, text
    ac3f2a02f179d651cdcb328ac93f77d18ef2459c Fri Aug 9 16:06:29 2019 -0700
    move unused type blocks to end of file and add pithy comment about them only being used by joinerGraph refs #5396
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    430fda962362260ffc09b407610f3629be8d474a Thu Aug 8 13:50:31 2019 -0700
    adding 50 bp padding around omimAvSnp search
• src/hg/makeDb/trackDb/lizard/anoCar2/cons7way.html
  • lines changed 3, context: html, text, full: html, text
    2cd793fe2187d619f85a2877ed42050ed42281f0 Tue Aug 6 08:30:20 2019 -0700
    Updating http to https for anoCar2, uiLinks cronjob
• src/hg/oneShot/freen/freen.c
  • lines changed 777, context: html, text, full: html, text
    0c1740e6f5e1784aff4a2dddf2bb6c96184059c3 Wed Aug 7 12:01:51 2019 -0700
    Got parser working mostly. Evaluator starting to work.
  • lines changed 235, context: html, text, full: html, text
    752306bc53b89dd0a9b02e57bd330b64f3a3fcc8 Wed Aug 7 15:50:57 2019 -0700
    Adding in some actual built in functions. Starting to extract bits into a strex.h interface file.
  • lines changed 92, context: html, text, full: html, text
    a4f5eb337ffaa1e4e9eaf9b45aa3543932236906 Wed Aug 7 17:13:35 2019 -0700
    Added in parameter type and count checks to built in functions. Added three new functions: now(), md5(), and split()
  • lines changed 1014, context: html, text, full: html, text
    6e7b8bdf6aeb604219a24f35cf1d303a0cb6edef Wed Aug 7 18:08:33 2019 -0700
    Librarifying strex string expression module that is going in for tabToTabDir to help sort through some of HCA madness.
• src/hg/utils/automation/asmHubGatewayPage.pl
  • lines changed 9, context: html, text, full: html, text
    2c720ad5f45b1111583f17a95b58cc9750f4c5c5 Tue Aug 6 09:44:15 2019 -0700
    fixup links to hgdownload for AGP and JPG image refs #23734
• src/hg/utils/automation/asmHubTrackDb.sh
  • lines changed 13, context: html, text, full: html, text
    2c720ad5f45b1111583f17a95b58cc9750f4c5c5 Tue Aug 6 09:44:15 2019 -0700
    fixup links to hgdownload for AGP and JPG image refs #23734
  • lines changed 28, context: html, text, full: html, text
    a6931e479d3f8415a57fb979b759537cbc6e0ab0 Thu Aug 8 22:16:57 2019 -0700
    xenoRefGene ready to go refs #23734
  • lines changed 3, context: html, text, full: html, text
    961c4bf5416b5f1282caf6200c94ce97c616e329 Thu Aug 8 23:11:57 2019 -0700
    correctly add index to xenoRefGene refs #23734
  • lines changed 4, context: html, text, full: html, text
    d323472f6693dec4cfd0533838563fc6bcdf25f2 Fri Aug 9 17:52:50 2019 -0700
    xenoRefGene description page fixed up and custom .as definition for the track and correct labelFields on xenoRefGene and ncbiGene refs #23734
• src/hg/utils/automation/asmHubXenoRefGene.pl
  • lines changed 83, context: html, text, full: html, text
    a6931e479d3f8415a57fb979b759537cbc6e0ab0 Thu Aug 8 22:16:57 2019 -0700
    xenoRefGene ready to go refs #23734
  • lines changed 72, context: html, text, full: html, text
    d323472f6693dec4cfd0533838563fc6bcdf25f2 Fri Aug 9 17:52:50 2019 -0700
    xenoRefGene description page fixed up and custom .as definition for the track and correct labelFields on xenoRefGene and ncbiGene refs #23734
• src/hg/utils/automation/doAssemblyHub.pl
  • lines changed 44, context: html, text, full: html, text
    565a1be447a21c7cc142eb1aa6571387aecd3b37 Thu Aug 8 21:31:28 2019 -0700
    adding doXenoRefGene procedure refs #23734
  • lines changed 3, context: html, text, full: html, text
    a6931e479d3f8415a57fb979b759537cbc6e0ab0 Thu Aug 8 22:16:57 2019 -0700
    xenoRefGene ready to go refs #23734
• src/hg/utils/automation/doXenoRefGene.pl
  • lines changed 405, context: html, text, full: html, text
    19eac373dbe1f4905c05238efc78f5becd8a31fc Thu Aug 8 10:55:14 2019 -0700
    beginning of xenoRefGene track construction refs #23734
  • lines changed 79, context: html, text, full: html, text
    bffb0697d62c7c19251d617ecd0233995921afb4 Thu Aug 8 21:30:15 2019 -0700
    a little bit quick and dirty but might be good enough for now refs #23734
  • lines changed 1, context: html, text, full: html, text
    961c4bf5416b5f1282caf6200c94ce97c616e329 Thu Aug 8 23:11:57 2019 -0700
    correctly add index to xenoRefGene refs #23734
  • lines changed 3, context: html, text, full: html, text
    d323472f6693dec4cfd0533838563fc6bcdf25f2 Fri Aug 9 17:52:50 2019 -0700
    xenoRefGene description page fixed up and custom .as definition for the track and correct labelFields on xenoRefGene and ncbiGene refs #23734
• src/hg/utils/blatServersCheck/blatServersCheck.c
  • lines changed 305, context: html, text, full: html, text
    4ca736a6e7b2cb37dab66d050ed3f84c79e3a2ad Sun Aug 11 02:11:32 2019 -0700
    Adding new utility blatServersCheck to make it easy for people to check the consistency of the blatServer tables against the actual gfServers running on blat machines.
  • lines changed 1, context: html, text, full: html, text
    2bd32e9550c000e5da571c03820f4b9f3211df55 Sun Aug 11 02:26:12 2019 -0700
    cleanup
• src/hg/utils/blatServersCheck/makefile
  • lines changed 5, context: html, text, full: html, text
    4ca736a6e7b2cb37dab66d050ed3f84c79e3a2ad Sun Aug 11 02:11:32 2019 -0700
    Adding new utility blatServersCheck to make it easy for people to check the consistency of the blatServer tables against the actual gfServers running on blat machines.
• src/hg/utils/makefile
  • lines changed 1, context: html, text, full: html, text
    4ca736a6e7b2cb37dab66d050ed3f84c79e3a2ad Sun Aug 11 02:11:32 2019 -0700
    Adding new utility blatServersCheck to make it easy for people to check the consistency of the blatServer tables against the actual gfServers running on blat machines.
• src/hg/utils/otto/clinvar/clinVarToBed
  • lines changed 114, context: html, text, full: html, text
    89a6b9f21f09d5b19127ac5232eace8ffcbbbcb4 Thu Aug 8 04:17:58 2019 -0700
    fixes and code cleanup to clinvar otto job before handover to chrisL, refs #23948
• src/inc/fieldedTable.h
  • lines changed 3, context: html, text, full: html, text
    9a5c53c204f4d4c780f6e57dc88a58f7a84ea28c Tue Aug 6 08:50:23 2019 -0700
    Adding new function - fieldedTableAddHead.
• src/inc/genoFind.h
  • lines changed 1, context: html, text, full: html, text
    f945af205d2f1cc66a529ebb71fd7907517bf2b5 Fri Aug 9 13:57:01 2019 -0700
    Incrementing blat version to 36x4 for Angies gfServer improved handling of _alts.
• src/inc/rql.h
  • lines changed 4, context: html, text, full: html, text
    79166a599f16eb59cff176099fb8611ded59d466 Tue Aug 6 11:51:11 2019 -0700
    Adding new rqlEvalCoerceToString for things that want to evaluate a string rather than a boolean expression.
• src/inc/srcVersion.h
  • lines changed 1, context: html, text, full: html, text
    4f42ac5eef7748338089fb2fa2621569bdc9f029 Mon Aug 12 10:03:08 2019 -0700
    New version number v386
• src/inc/strex.h
  • lines changed 24, context: html, text, full: html, text
    752306bc53b89dd0a9b02e57bd330b64f3a3fcc8 Wed Aug 7 15:50:57 2019 -0700
    Adding in some actual built in functions. Starting to extract bits into a strex.h interface file.
  • lines changed 5, context: html, text, full: html, text
    6e7b8bdf6aeb604219a24f35cf1d303a0cb6edef Wed Aug 7 18:08:33 2019 -0700
    Librarifying strex string expression module that is going in for tabToTabDir to help sort through some of HCA madness.
  • lines changed 5, context: html, text, full: html, text
    9688a777a961ceeceddcfe70c6c290626408617c Fri Aug 9 09:58:26 2019 -0700
    Adding fileName and fileLineNumber to strexParseString to make error messages more informative.
• src/lib/common.c
  • lines changed 2, context: html, text, full: html, text
    dda48ab9b28de6442a016aadbd93198d6c69a46e Wed Aug 7 23:54:00 2019 -0700
    Fixed an inconsistency in memory handling in nextStringBetween. It is now safe in all cases to free the returned value.
• src/lib/fieldedTable.c
  • lines changed 27, context: html, text, full: html, text
    9a5c53c204f4d4c780f6e57dc88a58f7a84ea28c Tue Aug 6 08:50:23 2019 -0700
    Adding new function - fieldedTableAddHead.
• src/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    6e7b8bdf6aeb604219a24f35cf1d303a0cb6edef Wed Aug 7 18:08:33 2019 -0700
    Librarifying strex string expression module that is going in for tabToTabDir to help sort through some of HCA madness.
• src/lib/net.c
  • lines changed 3, context: html, text, full: html, text
    854dc63198cb3c704ddd48a95cd75019d79ff961 Tue Aug 6 12:56:55 2019 -0700
    feedback from code review
• src/lib/rqlEval.c
  • lines changed 43, context: html, text, full: html, text
    36dcc59871b9d3c32a43919d2d6d26fef10e3d78 Tue Aug 6 11:50:28 2019 -0700
    Making rql interpreter handle string additions, which the parser was just merrily putting in leading to internalErrs during the eval phase. To support this adding a new rqlEvalCoerceToString function.
• src/lib/rqlParse.c
  • lines changed 1, context: html, text, full: html, text
    7c4cb76a5e34c074fd703685ff55c8dfa1ef3a92 Tue Aug 6 11:48:32 2019 -0700
    Fixed a big in a debugging/dump routine that caused core dumps on nulls.
• src/lib/strex.c
  • lines changed 1042, context: html, text, full: html, text
    6e7b8bdf6aeb604219a24f35cf1d303a0cb6edef Wed Aug 7 18:08:33 2019 -0700
    Librarifying strex string expression module that is going in for tabToTabDir to help sort through some of HCA madness.
  • lines changed 11, context: html, text, full: html, text
    16d50b66c01e686c4d0d457e44536446f55b8bfe Thu Aug 8 11:29:11 2019 -0700
    Renaming two built in functions.
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    1aa8e87e310d813960d2db2000ade0508ceb0539 Thu Aug 8 14:17:30 2019 -0700
    Improving commenting.
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    9688a777a961ceeceddcfe70c6c290626408617c Fri Aug 9 09:58:26 2019 -0700
    Adding fileName and fileLineNumber to strexParseString to make error messages more informative.
• src/lib/strex.doc
  • lines changed 19, context: html, text, full: html, text
    6e7b8bdf6aeb604219a24f35cf1d303a0cb6edef Wed Aug 7 18:08:33 2019 -0700
    Librarifying strex string expression module that is going in for tabToTabDir to help sort through some of HCA madness.
  • lines changed 7, context: html, text, full: html, text
    1caf6ec14e3a0a6f010ec4b5fe5f90d366a64021 Thu Aug 8 11:30:36 2019 -0700
    Updating a doc to describe operators as well as functions, and also rename some of the builtins.
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    f61da046c20f8466eae52182f97abbdee6573ae4 Thu Aug 8 14:05:43 2019 -0700
    Minor edits and additions to doc.
• src/lib/tokenizer.c
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    5b5114fd377cd50d1af59af46d6842ba3420b3cb Wed Aug 7 17:35:17 2019 -0700
    Making an error message less file-focused in parser.
• src/tabFile/tabToTabDir/in.tsv
  • lines changed 467, context: html, text, full: html, text
    86198e4f30bbabbb41efc97ccce663055308b5a2 Fri Aug 9 09:22:42 2019 -0700
    Starting rework on new test set. Deleted old spec that doesn't work any more.
• src/tabFile/tabToTabDir/inSpec.ra
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    86198e4f30bbabbb41efc97ccce663055308b5a2 Fri Aug 9 09:22:42 2019 -0700
    Starting rework on new test set. Deleted old spec that doesn't work any more.
• src/tabFile/tabToTabDir/tabToTabDir.c
  • lines changed 120, context: html, text, full: html, text
    3e84d05093eba8a6769aab1aa6a9dec09285c310 Wed Aug 7 23:56:07 2019 -0700
    Adding in strex language processing of the field source in the spec file.
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    4e4b09a243d7e6d5f15e890d6a98cffedb4327dd Fri Aug 9 06:15:05 2019 -0700
    adding full path, refs #23961
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    8edba16387f9185fea5edb8a05ced28d32ce6a34 Fri Aug 9 09:59:33 2019 -0700
    Adding file name and line number to strexParseString. The line number isn't accurate yet, is at bottom of stanza.
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    d7620abf791fd7d117a9c8b5a810a92274146c0a Fri Aug 9 12:34:44 2019 -0700
    Refactoring a bit to improve error reporting. Going from higher level to lower level .ra file parsing functions on the spec file so can keep track of line numbers when we are checking for errors better.
• src/tabFile/tabToTabDir/test/expected/a_strex_test.tsv
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    d7620abf791fd7d117a9c8b5a810a92274146c0a Fri Aug 9 12:34:44 2019 -0700
    Refactoring a bit to improve error reporting. Going from higher level to lower level .ra file parsing functions on the spec file so can keep track of line numbers when we are checking for errors better.
  • lines changed 2, context: html, text, full: html, text
    a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 Fri Aug 9 12:39:11 2019 -0700
    Oops, need to rename the test dir
• src/tabFile/tabToTabDir/test/expected/donor.tsv
  • lines changed 13, context: html, text, full: html, text
    d7620abf791fd7d117a9c8b5a810a92274146c0a Fri Aug 9 12:34:44 2019 -0700
    Refactoring a bit to improve error reporting. Going from higher level to lower level .ra file parsing functions on the spec file so can keep track of line numbers when we are checking for errors better.
  • lines changed 13, context: html, text, full: html, text
    a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 Fri Aug 9 12:39:11 2019 -0700
    Oops, need to rename the test dir
• src/tabFile/tabToTabDir/test/expected/fluidics_chip.tsv
  • lines changed 17, context: html, text, full: html, text
    d7620abf791fd7d117a9c8b5a810a92274146c0a Fri Aug 9 12:34:44 2019 -0700
    Refactoring a bit to improve error reporting. Going from higher level to lower level .ra file parsing functions on the spec file so can keep track of line numbers when we are checking for errors better.
  • lines changed 17, context: html, text, full: html, text
    a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 Fri Aug 9 12:39:11 2019 -0700
    Oops, need to rename the test dir
• src/tabFile/tabToTabDir/test/expected/project.tsv
  • lines changed 2, context: html, text, full: html, text
    d7620abf791fd7d117a9c8b5a810a92274146c0a Fri Aug 9 12:34:44 2019 -0700
    Refactoring a bit to improve error reporting. Going from higher level to lower level .ra file parsing functions on the spec file so can keep track of line numbers when we are checking for errors better.
  • lines changed 2, context: html, text, full: html, text
    a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 Fri Aug 9 12:39:11 2019 -0700
    Oops, need to rename the test dir
• src/tabFile/tabToTabDir/test/expected/sample.tsv
  • lines changed 467, context: html, text, full: html, text
    d7620abf791fd7d117a9c8b5a810a92274146c0a Fri Aug 9 12:34:44 2019 -0700
    Refactoring a bit to improve error reporting. Going from higher level to lower level .ra file parsing functions on the spec file so can keep track of line numbers when we are checking for errors better.
  • lines changed 467, context: html, text, full: html, text
    a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 Fri Aug 9 12:39:11 2019 -0700
    Oops, need to rename the test dir
• src/tabFile/tabToTabDir/test/expected/specimen.tsv
  • lines changed 15, context: html, text, full: html, text
    d7620abf791fd7d117a9c8b5a810a92274146c0a Fri Aug 9 12:34:44 2019 -0700
    Refactoring a bit to improve error reporting. Going from higher level to lower level .ra file parsing functions on the spec file so can keep track of line numbers when we are checking for errors better.
  • lines changed 15, context: html, text, full: html, text
    a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 Fri Aug 9 12:39:11 2019 -0700
    Oops, need to rename the test dir
• src/tabFile/tabToTabDir/test/in.tsv
  • lines changed 467, context: html, text, full: html, text
    86198e4f30bbabbb41efc97ccce663055308b5a2 Fri Aug 9 09:22:42 2019 -0700
    Starting rework on new test set. Deleted old spec that doesn't work any more.
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    d7cb3ff035b797a86966dc555a651a2fd3ab76fe Fri Aug 9 09:23:24 2019 -0700
    Making a symbol with dots in it for input field name because we need to make sure it works.
  • lines changed 467, context: html, text, full: html, text
    a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 Fri Aug 9 12:39:11 2019 -0700
    Oops, need to rename the test dir
• src/tabFile/tabToTabDir/test/spec.txt
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    d7620abf791fd7d117a9c8b5a810a92274146c0a Fri Aug 9 12:34:44 2019 -0700
    Refactoring a bit to improve error reporting. Going from higher level to lower level .ra file parsing functions on the spec file so can keep track of line numbers when we are checking for errors better.
  • lines changed 50, context: html, text, full: html, text
    a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 Fri Aug 9 12:39:11 2019 -0700
    Oops, need to rename the test dir
• src/tabFile/tabToTabDir/tests/expected/a_strex_test.tsv
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    a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 Fri Aug 9 12:39:11 2019 -0700
    Oops, need to rename the test dir
• src/tabFile/tabToTabDir/tests/expected/donor.tsv
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    a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 Fri Aug 9 12:39:11 2019 -0700
    Oops, need to rename the test dir
• src/tabFile/tabToTabDir/tests/expected/fluidics_chip.tsv
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    a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 Fri Aug 9 12:39:11 2019 -0700
    Oops, need to rename the test dir
• src/tabFile/tabToTabDir/tests/expected/project.tsv
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    a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 Fri Aug 9 12:39:11 2019 -0700
    Oops, need to rename the test dir
• src/tabFile/tabToTabDir/tests/expected/sample.tsv
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    a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 Fri Aug 9 12:39:11 2019 -0700
    Oops, need to rename the test dir
• src/tabFile/tabToTabDir/tests/expected/specimen.tsv
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    a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 Fri Aug 9 12:39:11 2019 -0700
    Oops, need to rename the test dir
• src/tabFile/tabToTabDir/tests/in.tsv
  • lines changed 467, context: html, text, full: html, text
    a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 Fri Aug 9 12:39:11 2019 -0700
    Oops, need to rename the test dir
  • lines changed 467, context: html, text, full: html, text
    2f497ccf091006b7d9224ce470460a82d2a61f18 Mon Aug 12 05:25:20 2019 -0700
    adding makefile and directories like for the bigWig tests, refs #23961
• src/tabFile/tabToTabDir/tests/input/in.tsv
  • lines changed 467, context: html, text, full: html, text
    2f497ccf091006b7d9224ce470460a82d2a61f18 Mon Aug 12 05:25:20 2019 -0700
    adding makefile and directories like for the bigWig tests, refs #23961
• src/tabFile/tabToTabDir/tests/input/inSpec.ra
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    2f497ccf091006b7d9224ce470460a82d2a61f18 Mon Aug 12 05:25:20 2019 -0700
    adding makefile and directories like for the bigWig tests, refs #23961
• src/tabFile/tabToTabDir/tests/input/spec.txt
  • lines changed 50, context: html, text, full: html, text
    2f497ccf091006b7d9224ce470460a82d2a61f18 Mon Aug 12 05:25:20 2019 -0700
    adding makefile and directories like for the bigWig tests, refs #23961
• src/tabFile/tabToTabDir/tests/makefile
  • lines changed 23, context: html, text, full: html, text
    2f497ccf091006b7d9224ce470460a82d2a61f18 Mon Aug 12 05:25:20 2019 -0700
    adding makefile and directories like for the bigWig tests, refs #23961
• src/tabFile/tabToTabDir/tests/spec.txt
  • lines changed 50, context: html, text, full: html, text
    a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 Fri Aug 9 12:39:11 2019 -0700
    Oops, need to rename the test dir
  • lines changed 50, context: html, text, full: html, text
    2f497ccf091006b7d9224ce470460a82d2a61f18 Mon Aug 12 05:25:20 2019 -0700
    adding makefile and directories like for the bigWig tests, refs #23961
• src/utils/qa/weeklybld/buildEnv.csh
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    105fec5755610c9d34105977e6b87a5ed248540e Mon Aug 12 10:01:08 2019 -0700
    v386 final build, refs #23928

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• files changed: 109