All File Changes

v400_base to v401_preview (2020-06-22 to 2020-06-29) v401

• confs/hgwbeta.hg.conf
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    bf241dde4de93b75b122f52983e1894caf3f9c13 Sun Jun 28 01:11:42 2020 -0700
    Installing updated hg.conf files from UCSC servers
• src/hg/hgGene/hgGene.c
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    a9c9cf2828c124535a1562f709bd4437b1bf60a2 Mon Jun 22 16:41:31 2020 -0700
    starting on making hgGene use and external database for the know* tables
• src/hg/hgGene/hgGene.h
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    a9c9cf2828c124535a1562f709bd4437b1bf60a2 Mon Jun 22 16:41:31 2020 -0700
    starting on making hgGene use and external database for the know* tables
• src/hg/hgGene/links.c
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    a9c9cf2828c124535a1562f709bd4437b1bf60a2 Mon Jun 22 16:41:31 2020 -0700
    starting on making hgGene use and external database for the know* tables
• src/hg/hgGene/pathways.c
  • lines changed 4, context: html, text, full: html, text
    a9c9cf2828c124535a1562f709bd4437b1bf60a2 Mon Jun 22 16:41:31 2020 -0700
    starting on making hgGene use and external database for the know* tables
  • lines changed 1, context: html, text, full: html, text
    97c67666efd79c8d87918466629ee1781138797c Thu Jun 25 17:39:35 2020 -0700
    ongoing work on gencodeV35
• src/hg/hgGene/synonym.c
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    a9c9cf2828c124535a1562f709bd4437b1bf60a2 Mon Jun 22 16:41:31 2020 -0700
    starting on making hgGene use and external database for the know* tables
• src/hg/hgTables/mainPage.c
  • lines changed 17, context: html, text, full: html, text
    f815a5698d53f70b21f42f113d93fdf5940289e7 Wed Jun 24 06:57:07 2020 -0700
    adding dbSnp download warning to table browser, refs #25775
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    0a74812da4d15709cac98c69ef2660db11769b2b Fri Jun 26 02:21:13 2020 -0700
    making link relative, refs #25775
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    55ae69840a7842ab5b26755435daaad332635914 Mon Jun 29 05:02:32 2020 -0700
    adding noGenomeReason trackDb statement for OMIM and Crispr tracks, refs #25428
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 1, context: html, text, full: html, text
    0d3b8feb6074f6caccc2d4aadd020961fbd7eb82 Wed Jun 10 14:39:38 2020 -0700
    Add drag reorder of VCF samples to VCF trio display. Also fixes bug in haplotype sort that I didn't discover until adding drag reorder. Sometimes when sorting haplotypes it is the case that the initial best match to a child allele is the same for each parent. Previously I would just advance the first drawn parent to the next best match but now I also check whether advancing the first drawn is actually the best idea and potentially advance the other parent instead, refs #25582
• src/hg/hgTracks/vcfTrack.c
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    68bec7571e8307853f5e9193503f8561a5eb4310 Mon Jun 22 17:14:18 2020 -0700
    Adding hub support for vcfPhasedTrio track type, refs #18846
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    6790e66b73c00a9830b64d5fb2eda5733b4e4b90 Thu Jun 25 16:04:36 2020 -0700
    New trackDb variable for phased trios to default to alternate labels if available, refs #25582
  • lines changed 7, context: html, text, full: html, text
    18eef8c27d7fd3382fb8008b0dd344ca4c6f066b Thu Jun 25 16:56:29 2020 -0700
    Fixes bug I introduced in 6790e66b73 where I forgot to account for user selections on hgTrackUi, refs #25582
  • lines changed 51, context: html, text, full: html, text
    bd53b8dfe0a86f9d1c8ed57289fd409a6c52bd6b Fri Jun 26 10:54:41 2020 -0700
    Add option to shade alleles by inconsitent transmission between child and parent haplotypes
  • lines changed 66, context: html, text, full: html, text
    0d3b8feb6074f6caccc2d4aadd020961fbd7eb82 Wed Jun 10 14:39:38 2020 -0700
    Add drag reorder of VCF samples to VCF trio display. Also fixes bug in haplotype sort that I didn't discover until adding drag reorder. Sometimes when sorting haplotypes it is the case that the initial best match to a child allele is the same for each parent. Previously I would just advance the first drawn parent to the next best match but now I also check whether advancing the first drawn is actually the best idea and potentially advance the other parent instead, refs #25582
• src/hg/hgc/vcfClick.c
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    451dd3c05586d1f291a36920780488e789777240 Wed Jun 24 09:43:15 2020 -0700
    Remove variant sort option from vcfPhasedTrio hgc pages, refs #25582
• src/hg/htdocs/FAQ/FAQdownloads.html
  • lines changed 126, context: html, text, full: html, text
    8f68c0d267b2581bf16895528ab8064ce1b377cc Thu Jun 25 11:56:12 2020 -0700
    Adding new SNP download section to link from hgTables refs #25775
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 1, context: html, text, full: html, text
    881d5bfc5cc2eb0bbff1856c42a2fc3c846ff6c7 Tue Jun 23 10:58:52 2020 -0700
    Using hg38 instead of hg19 in the announcement for the ENCODE cCREs track, refs #24668
  • lines changed 68, context: html, text, full: html, text
    23157e10e700d6c8e8d9a069d30934dd8d34de9e Wed Jun 24 15:13:42 2020 -0700
    Release announcement for VGP update refs #25555
• src/hg/htdocs/indexNews.html
  • lines changed 12, context: html, text, full: html, text
    23157e10e700d6c8e8d9a069d30934dd8d34de9e Wed Jun 24 15:13:42 2020 -0700
    Release announcement for VGP update refs #25555
• src/hg/inc/vcfUi.h
  • lines changed 1, context: html, text, full: html, text
    6790e66b73c00a9830b64d5fb2eda5733b4e4b90 Thu Jun 25 16:04:36 2020 -0700
    New trackDb variable for phased trios to default to alternate labels if available, refs #25582
  • lines changed 1, context: html, text, full: html, text
    bd53b8dfe0a86f9d1c8ed57289fd409a6c52bd6b Fri Jun 26 10:54:41 2020 -0700
    Add option to shade alleles by inconsitent transmission between child and parent haplotypes
  • lines changed 2, context: html, text, full: html, text
    0d3b8feb6074f6caccc2d4aadd020961fbd7eb82 Wed Jun 10 14:39:38 2020 -0700
    Add drag reorder of VCF samples to VCF trio display. Also fixes bug in haplotype sort that I didn't discover until adding drag reorder. Sometimes when sorting haplotypes it is the case that the initial best match to a child allele is the same for each parent. Previously I would just advance the first drawn parent to the next best match but now I also check whether advancing the first drawn is actually the best idea and potentially advance the other parent instead, refs #25582
• src/hg/js/hgTracks.js
  • lines changed 402, context: html, text, full: html, text
    0d3b8feb6074f6caccc2d4aadd020961fbd7eb82 Wed Jun 10 14:39:38 2020 -0700
    Add drag reorder of VCF samples to VCF trio display. Also fixes bug in haplotype sort that I didn't discover until adding drag reorder. Sometimes when sorting haplotypes it is the case that the initial best match to a child allele is the same for each parent. Previously I would just advance the first drawn parent to the next best match but now I also check whether advancing the first drawn is actually the best idea and potentially advance the other parent instead, refs #25582
• src/hg/js/jquery.tablednd.js
  • lines changed 2, context: html, text, full: html, text
    0d3b8feb6074f6caccc2d4aadd020961fbd7eb82 Wed Jun 10 14:39:38 2020 -0700
    Add drag reorder of VCF samples to VCF trio display. Also fixes bug in haplotype sort that I didn't discover until adding drag reorder. Sometimes when sorting haplotypes it is the case that the initial best match to a child allele is the same for each parent. Previously I would just advance the first drawn parent to the next best match but now I also check whether advancing the first drawn is actually the best idea and potentially advance the other parent instead, refs #25582
• src/hg/js/utils.js
  • lines changed 404, context: html, text, full: html, text
    0d3b8feb6074f6caccc2d4aadd020961fbd7eb82 Wed Jun 10 14:39:38 2020 -0700
    Add drag reorder of VCF samples to VCF trio display. Also fixes bug in haplotype sort that I didn't discover until adding drag reorder. Sometimes when sorting haplotypes it is the case that the initial best match to a child allele is the same for each parent. Previously I would just advance the first drawn parent to the next best match but now I also check whether advancing the first drawn is actually the best idea and potentially advance the other parent instead, refs #25582
• src/hg/lib/trackHub.c
  • lines changed 5, context: html, text, full: html, text
    68bec7571e8307853f5e9193503f8561a5eb4310 Mon Jun 22 17:14:18 2020 -0700
    Adding hub support for vcfPhasedTrio track type, refs #18846
• src/hg/lib/vcfUi.c
  • lines changed 1, context: html, text, full: html, text
    606a508ff4d9eef9075418e54448edc89c35aae2 Tue Jun 23 13:38:04 2020 -0700
    Increase the max VCF track height to be more in line with the default maxItems-based maximumTrackHeight() (1000 items, 10px/item).
  • lines changed 1, context: html, text, full: html, text
    18eef8c27d7fd3382fb8008b0dd344ca4c6f066b Thu Jun 25 16:56:29 2020 -0700
    Fixes bug I introduced in 6790e66b73 where I forgot to account for user selections on hgTrackUi, refs #25582
  • lines changed 6, context: html, text, full: html, text
    bd53b8dfe0a86f9d1c8ed57289fd409a6c52bd6b Fri Jun 26 10:54:41 2020 -0700
    Add option to shade alleles by inconsitent transmission between child and parent haplotypes
  • lines changed 121, context: html, text, full: html, text
    0d3b8feb6074f6caccc2d4aadd020961fbd7eb82 Wed Jun 10 14:39:38 2020 -0700
    Add drag reorder of VCF samples to VCF trio display. Also fixes bug in haplotype sort that I didn't discover until adding drag reorder. Sometimes when sorting haplotypes it is the case that the initial best match to a child allele is the same for each parent. Previously I would just advance the first drawn parent to the next best match but now I also check whether advancing the first drawn is actually the best idea and potentially advance the other parent instead, refs #25582
• src/hg/makeDb/doc/canFam4/initialBuild.txt
  • lines changed 51, context: html, text, full: html, text
    8e8159481aabadf35f639d236009d14c8562f7fe Mon Jun 22 14:23:47 2020 -0700
    canFam4 done and QA ready refs @25279
• src/hg/makeDb/doc/mm10.txt
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    623c5f7d897098f43ae95b5a16c6a15a2ee9301b Mon Jun 22 14:06:22 2020 -0700
    panPan3 done and QA ready refs #25720
• src/hg/makeDb/doc/panPan3/initialBuild.txt
  • lines changed 134, context: html, text, full: html, text
    623c5f7d897098f43ae95b5a16c6a15a2ee9301b Mon Jun 22 14:06:22 2020 -0700
    panPan3 done and QA ready refs #25720
• src/hg/makeDb/doc/ucscGenes/hg38.gencodeV35.sh
  • lines changed 97, context: html, text, full: html, text
    a9c9cf2828c124535a1562f709bd4437b1bf60a2 Mon Jun 22 16:41:31 2020 -0700
    starting on making hgGene use and external database for the know* tables
  • lines changed 168, context: html, text, full: html, text
    66e946e37e7c2624155560b1e92b81e35f8391db Thu Jun 25 17:30:21 2020 -0700
    work on gencodeV35
• src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv
  • lines changed 8, context: html, text, full: html, text
    33ba5be5a6626baabe8532e67ab2685108567067 Wed Jun 24 08:42:22 2020 -0700
    improved common names refs #25555
• src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv
  • lines changed 6, context: html, text, full: html, text
    33ba5be5a6626baabe8532e67ab2685108567067 Wed Jun 24 08:42:22 2020 -0700
    improved common names refs #25555
• src/hg/makeDb/doc/vgpAsmHub/vgp.userTracks.tsv
  • lines changed 2, context: html, text, full: html, text
    33ba5be5a6626baabe8532e67ab2685108567067 Wed Jun 24 08:42:22 2020 -0700
    improved common names refs #25555
• src/hg/makeDb/outside/gencode/bin/gencodeGenerateTrackDbs
  • lines changed 168, context: html, text, full: html, text
    1436ad57e2be4d9763b695eef131b28ba648df46 Thu Jun 25 11:44:18 2020 -0700
    added all.joiner schema for new gencode structure
• src/hg/makeDb/outside/gencode/gencodeHgGene2Load.mk
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    1436ad57e2be4d9763b695eef131b28ba648df46 Thu Jun 25 11:44:18 2020 -0700
    added all.joiner schema for new gencode structure
• src/hg/makeDb/schema/all.joiner
  • lines changed 81, context: html, text, full: html, text
    1436ad57e2be4d9763b695eef131b28ba648df46 Thu Jun 25 11:44:18 2020 -0700
    added all.joiner schema for new gencode structure
• src/hg/makeDb/trackDb/chicken/bgiCov.html
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    4ac1728714faba27a7c4762745b3a8ab578af2ae Thu Jun 25 10:31:18 2020 -0700
    Updating http to https for galGal2. Fixing a link to the sgp2 software. uiLinks cronjob, no Redmine.
• src/hg/makeDb/trackDb/chicken/galGal2/bgiGene.html
  • lines changed 1, context: html, text, full: html, text
    4ac1728714faba27a7c4762745b3a8ab578af2ae Thu Jun 25 10:31:18 2020 -0700
    Updating http to https for galGal2. Fixing a link to the sgp2 software. uiLinks cronjob, no Redmine.
• src/hg/makeDb/trackDb/chicken/galGal2/bgiSnp.html
  • lines changed 2, context: html, text, full: html, text
    4ac1728714faba27a7c4762745b3a8ab578af2ae Thu Jun 25 10:31:18 2020 -0700
    Updating http to https for galGal2. Fixing a link to the sgp2 software. uiLinks cronjob, no Redmine.
• src/hg/makeDb/trackDb/crisprAll.ra
  • lines changed 1, context: html, text, full: html, text
    55ae69840a7842ab5b26755435daaad332635914 Mon Jun 29 05:02:32 2020 -0700
    adding noGenomeReason trackDb statement for OMIM and Crispr tracks, refs #25428
• src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra
  • lines changed 6, context: html, text, full: html, text
    2b79ac8a04c5af84f9294e2444b75d7a1cf9bf81 Wed Jun 24 20:15:17 2020 -0700
    change default track mean coverage and SVs All to ON dense refs #25785
• src/hg/makeDb/trackDb/human/hg38/gencodeV35.ra
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    a9c9cf2828c124535a1562f709bd4437b1bf60a2 Mon Jun 22 16:41:31 2020 -0700
    starting on making hgGene use and external database for the know* tables
  • lines changed 2, context: html, text, full: html, text
    97c67666efd79c8d87918466629ee1781138797c Thu Jun 25 17:39:35 2020 -0700
    ongoing work on gencodeV35
• src/hg/makeDb/trackDb/human/hg38/liftOver.ra
  • lines changed 50, context: html, text, full: html, text
    bdf6a3d8deb932ada8b5f9a304b923fe14f1b30d Fri Jun 26 06:28:05 2020 -0700
    adding liftover tracks to hg19 and hg38, refs #24449
• src/hg/makeDb/trackDb/human/hg38/mergedBGP.ra
  • lines changed 13, context: html, text, full: html, text
    a9c9cf2828c124535a1562f709bd4437b1bf60a2 Mon Jun 22 16:41:31 2020 -0700
    starting on making hgGene use and external database for the know* tables
• src/hg/makeDb/trackDb/human/hg38/tgpTrios.html
  • lines changed 7, context: html, text, full: html, text
    7908c0758b386ad416b8c455c63566083a074b9d Tue Jun 23 16:12:13 2020 -0700
    Additions to tgpTrio track #25582
• src/hg/makeDb/trackDb/human/hg38/trackDb.gencode.ra
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    1db6e129e2bea08b5d476bed1d37238eeac73896 Wed Jun 24 13:01:17 2020 -0700
    forgot to include GENCODE V35 ra
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    ea06aed8b961bf688aeeb0c96e8feec6290a4df8 Mon Jun 22 11:42:07 2020 -0700
    remove mergedBGP track
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    a9c9cf2828c124535a1562f709bd4437b1bf60a2 Mon Jun 22 16:41:31 2020 -0700
    starting on making hgGene use and external database for the know* tables
  • lines changed 2, context: html, text, full: html, text
    7908c0758b386ad416b8c455c63566083a074b9d Tue Jun 23 16:12:13 2020 -0700
    Additions to tgpTrio track #25582
  • lines changed 1, context: html, text, full: html, text
    6790e66b73c00a9830b64d5fb2eda5733b4e4b90 Thu Jun 25 16:04:36 2020 -0700
    New trackDb variable for phased trios to default to alternate labels if available, refs #25582
  • lines changed 50, context: html, text, full: html, text
    bdf6a3d8deb932ada8b5f9a304b923fe14f1b30d Fri Jun 26 06:28:05 2020 -0700
    adding liftover tracks to hg19 and hg38, refs #24449
• src/hg/makeDb/trackDb/human/omimGene2.html
  • lines changed 77, context: html, text, full: html, text
    47978822ffb2ad32cc243b15734ea33bc37f275c Tue Jun 23 18:41:48 2020 -0700
    added abbreviations inheritance table refs #18419
• src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra
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    0e4e6f324c4da85747574333a6dde08d24172fa1 Wed Jun 24 08:20:55 2020 -0700
    growing the two clinvar tracks to adulthood, as they don't need a parent anymore, refs #24850
• src/hg/makeDb/trackDb/human/trackDb.ra
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    8a5f5653f2b75fec3688f249eb2edea922798e3d Tue Jun 23 01:22:38 2020 -0700
    making all fields default fields, refs #18419
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    2b2ed5ae37546ee91f57a52edd3e089b048e5dee Wed Jun 24 17:08:56 2020 -0700
    linked html description to OMIMGenes new track refs #18419
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    55ae69840a7842ab5b26755435daaad332635914 Mon Jun 29 05:02:32 2020 -0700
    adding noGenomeReason trackDb statement for OMIM and Crispr tracks, refs #25428
• src/hg/makeDb/trackDb/makefile
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    60e8aef8f6340a0ec9f9432d6aa20ac526222fa4 Wed Jun 24 09:53:51 2020 -0700
    For the new hgwdev-demo-user machines, the USER passed in contains a hyphen which can't be part of a mysql table name (e.g. we need trackDb_demo_angie not trackDb_demo-angie), so replace it for table names.
• src/hg/makeDb/trackDb/refSeqComposite.html
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    efd0ad08515edf8a962800e5f2b52f235cee2a9f Fri Jun 26 15:56:25 2020 -0700
    Adding note about using RNA-seq for Max #25789
• src/hg/makeDb/trackDb/sgpGene.html
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    4ac1728714faba27a7c4762745b3a8ab578af2ae Thu Jun 25 10:31:18 2020 -0700
    Updating http to https for galGal2. Fixing a link to the sgp2 software. uiLinks cronjob, no Redmine.
• src/hg/makeDb/trackDb/tagTypes.tab
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    a9c9cf2828c124535a1562f709bd4437b1bf60a2 Mon Jun 22 16:41:31 2020 -0700
    starting on making hgGene use and external database for the know* tables
  • lines changed 1, context: html, text, full: html, text
    6790e66b73c00a9830b64d5fb2eda5733b4e4b90 Thu Jun 25 16:04:36 2020 -0700
    New trackDb variable for phased trios to default to alternate labels if available, refs #25582
  • lines changed 1, context: html, text, full: html, text
    97c67666efd79c8d87918466629ee1781138797c Thu Jun 25 17:39:35 2020 -0700
    ongoing work on gencodeV35
  • lines changed 1, context: html, text, full: html, text
    55ae69840a7842ab5b26755435daaad332635914 Mon Jun 29 05:02:32 2020 -0700
    adding noGenomeReason trackDb statement for OMIM and Crispr tracks, refs #25428
• src/hg/makeDb/trackDb/virus/wuhCor1/PhyloCSF_smooth.html
  • lines changed 10, context: html, text, full: html, text
    f802c513ac9e3516453ebf98d5c718c71efb673a Thu Jun 25 02:30:01 2020 -0700
    fixing typos on desc page found by QA, refs #25644
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    fdfa8be731c62435f5f625617fdfa8e4f782f7d6 Fri Jun 26 07:12:30 2020 -0700
    fixing up phylocsf docs page, refs #25644
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    cc606af29770843bca40645e449a9d44c183d3fd Fri Jun 26 11:41:39 2020 -0700
    added Data Access, made all of your columns <100 chars, added links to your papers, combined citations with credits #25644
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    07386a3e015be4945d11edb51c372fb728a3c0b9 Fri Jun 26 11:47:46 2020 -0700
    Fixing merge conflict #25644
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    08f7b0a5948edd0237ed609918372910be3bc36a Fri Jun 26 15:14:49 2020 -0700
    Fixing merge, adding Refs #25633
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    1bb14d1493259b16b4f3834eba642ed5b2e15be0 Fri Jun 26 17:30:19 2020 -0700
    Adding refs and fixing formatting #25644
• src/hg/makeDb/trackDb/virus/wuhCor1/microdel.html
  • lines changed 46, context: html, text, full: html, text
    b4c73b02a0b1482ca97e94030ac3c55ebf8c191a Mon Jun 22 14:18:31 2020 -0700
    Adding Data Access to description page #25609
• src/hg/makeDb/trackDb/virus/wuhCor1/nextstrainClade.html
  • lines changed 74, context: html, text, full: html, text
    8d050f7b9336a7d02c59240396f65f87efb3d3e4 Wed Jun 24 15:54:31 2020 -0700
    Update Nextstrain tracks to include new clade system. refs #25782
• src/hg/makeDb/trackDb/virus/wuhCor1/nextstrainFreq.html
  • lines changed 1, context: html, text, full: html, text
    a0bf82e890e8668b06508a3d394ff85ea772b4aa Thu Jun 25 15:07:36 2020 -0700
    Typo fix
• src/hg/makeDb/trackDb/virus/wuhCor1/nextstrainOldClade.html
  • lines changed 131, context: html, text, full: html, text
    8d050f7b9336a7d02c59240396f65f87efb3d3e4 Wed Jun 24 15:54:31 2020 -0700
    Update Nextstrain tracks to include new clade system. refs #25782
• src/hg/makeDb/trackDb/virus/wuhCor1/nextstrainParsimony.html
  • lines changed 83, context: html, text, full: html, text
    062e6b7ae1ce485b7d4d048158c6c9a05780e9ea Thu Jun 25 15:08:27 2020 -0700
    Description for Nextstrain Parsimony track. refs #25799
• src/hg/makeDb/trackDb/virus/wuhCor1/nextstrainSamples.html
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    8d050f7b9336a7d02c59240396f65f87efb3d3e4 Wed Jun 24 15:54:31 2020 -0700
    Update Nextstrain tracks to include new clade system. refs #25782
• src/hg/makeDb/trackDb/virus/wuhCor1/nextstrainSamplesDevOnly.html
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    8d050f7b9336a7d02c59240396f65f87efb3d3e4 Wed Jun 24 15:54:31 2020 -0700
    Update Nextstrain tracks to include new clade system. refs #25782
• src/hg/makeDb/trackDb/virus/wuhCor1/nextstrainSamplesOldClades.html
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    8d050f7b9336a7d02c59240396f65f87efb3d3e4 Wed Jun 24 15:54:31 2020 -0700
    Update Nextstrain tracks to include new clade system. refs #25782
• src/hg/makeDb/trackDb/virus/wuhCor1/phylocsf.ra
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    5c3b9e75c7947ebc7b0f32cff5e7b5c71865fc01 Fri Jun 26 07:08:52 2020 -0700
    combining the phylocsf tracks for wuhCor1, refs #25644
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.nextstrain.ra
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    8d050f7b9336a7d02c59240396f65f87efb3d3e4 Wed Jun 24 15:54:31 2020 -0700
    Update Nextstrain tracks to include new clade system. refs #25782
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.nextstrain.v1.ra
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    8d050f7b9336a7d02c59240396f65f87efb3d3e4 Wed Jun 24 15:54:31 2020 -0700
    Update Nextstrain tracks to include new clade system. refs #25782
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra
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    b4c73b02a0b1482ca97e94030ac3c55ebf8c191a Mon Jun 22 14:18:31 2020 -0700
    Adding Data Access to description page #25609
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    8d050f7b9336a7d02c59240396f65f87efb3d3e4 Wed Jun 24 15:54:31 2020 -0700
    Update Nextstrain tracks to include new clade system. refs #25782
• src/hg/near/hgNear/hgNear.c
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    97c67666efd79c8d87918466629ee1781138797c Thu Jun 25 17:39:35 2020 -0700
    ongoing work on gencodeV35
• src/hg/near/hgNear/knownGene.c
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    97c67666efd79c8d87918466629ee1781138797c Thu Jun 25 17:39:35 2020 -0700
    ongoing work on gencodeV35
• src/utils/gitTools/gitFiles
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    d611c88520ad00874f8f7762507077e7ff95bc26 Fri Jun 26 12:00:51 2020 -0700
    change gitFiles to check to see if git is installed and the current directory is in a repository
• src/utils/qa/weeklybld/buildEnv.csh
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    6439ed1dc039ee9c134fa50df54cec3aa3da30a3 Mon Jun 29 10:01:18 2020 -0700
    v401 preview1

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