Commits for max

v490_base to v491_preview (2025-11-03 to 2025-11-10) v491

c3c037cd89b6095049807b367371fc559a07ee95 Mon Nov 3 17:43:57 2025 -0800

• docs update for var freqs track
  • src/hg/makeDb/trackDb/human/varFreqs.html - lines changed 98, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/varFreqs.ra - lines changed 20, context: html, text, full: html, text

d26249b15576a1cf3f7a79ce49e8d302b6dd32a6 Mon Nov 3 17:49:44 2025 -0800

• small changes to variant freqs track
  • src/hg/makeDb/trackDb/human/varFreqs.ra - lines changed 8, context: html, text, full: html, text

1eb778792659124aa071876e2c5541bc8e3d6b3d Tue Nov 4 01:54:21 2025 -0800

• adding a link to more updated ancient dna tracks, refs #36592
  • src/hg/makeDb/trackDb/human/alfa.html - lines changed 75, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/bamSLDenisova.html - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/varFreqs.ra - lines changed 114, context: html, text, full: html, text

e5a54c455c6cf05fda2bc967254e2929f0b07d39 Tue Nov 4 03:59:16 2025 -0800

• adding the word "flank" to table browser exon split output mode, so the user knows what this is about, refs #30655
  • src/hg/lib/featureBits.c - lines changed 1, context: html, text, full: html, text

c101e1eef844b0390c108f2806c7c03233a53731 Tue Nov 4 05:13:02 2025 -0800

• comment change after code review, refs #36651
  • src/hg/hgTracks/mainMain.c - lines changed 1, context: html, text, full: html, text

eccfc3f056c761a3009ced5e839274f4256a06de Tue Nov 4 05:15:23 2025 -0800

• removing style change that I accidentally committed this week
  • src/hg/htdocs/style/HGStyle.css - lines changed 17, context: html, text, full: html, text

28bfc5e8e4301c0955eac938490458282438cf49 Tue Nov 4 07:28:44 2025 -0800

• adding HGDP and alfa docs page to var freqs track
  • src/hg/makeDb/trackDb/human/ALFA.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/varFreqs.ra - lines changed 53, context: html, text, full: html, text

af700cd3f80530f9addd7e1e8b8f9ed7663a93b4 Thu Nov 6 01:07:48 2025 -0800

• allowing non-20bp crispr guides in crispr track, email from Eric Malekos, no redmine
  • src/hg/hgc/bigBedClick.c - lines changed 2, context: html, text, full: html, text

aa8e2e87c3b54e9662d87cd5b921d5607fc846ad Mon Nov 10 05:51:08 2025 -0800

• adding korea to varFreqs supertrack, refs #36642
  • src/hg/makeDb/doc/hg19.txt - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/varFreqs.txt - lines changed 69, context: html, text, full: html, text
  • src/hg/makeDb/scripts/kovaToVcf.py - lines changed 148, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/varFreqs.html - lines changed 223, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/varFreqs.ra - lines changed 88, context: html, text, full: html, text