All File Changes

v495_preview to v495_preview2 (2026-02-23 to 2026-03-02) v495

• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 5, context: html, text, full: html, text
    5de42e2798508dec62b4b89ff15d4966e1ae32da Tue Feb 24 10:03:24 2026 -0800
    the printing of each hub that is in search results is now protected by errCatching so errors will not derail the whole process refs #37100
• src/hg/hgSession/hgSession.c
  • lines changed 12, context: html, text, full: html, text
    fb9fad40e3c171cbfcda792eea401a75e5829242 Thu Feb 26 14:29:52 2026 -0800
    Removing the max-width tag, which was arbitrarily cutting the hgSession table short, especially these days when monitors are wider. Also fixed an issue that TH and TD items were being called, TH are table headers and TD are cells, so all the header columns should be TH, this was causing a visual bug when the screen size was very small. Also removed the <B> tags, they are not necessary since TH items are automatically bolded. Also aligned all the text to the left based on ticket feedback since it looks better. Lastly, added a line for the 'sessionTable_filter' element to override the CSS of the filter search bar so it will be on the left side, next to the show NN items. Refs #33998
• src/hg/hgTables/mainPage.c
  • lines changed 2, context: html, text, full: html, text
    de932c61ecb4385a73f49bb656bb01ea85ea57bd Mon Mar 2 05:52:24 2026 -0800
    removing the greying out of dropdown options on the table browser for restricted tracks, to make the warning show up if genome is already selected when the dropdown is printed, refs #37168
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 72, context: html, text, full: html, text
    60d75b94bb7e8e3d749c103ff5ae613268562c46 Fri Jan 30 02:55:20 2026 -0800
    Revert "Revert "Reapply "changing superTrack TrackUi quite a bit."" This reverts commit 55df1a106590a6c9fd7e3cca90fa6bbad8eb50c4.
  • lines changed 6, context: html, text, full: html, text
    16fcd800410b0c29be0564f2e657f30fa1862daf Fri Jan 30 04:10:41 2026 -0800
    fixing composite bug, refs #36917
  • lines changed 2, context: html, text, full: html, text
    aee2779a0e183ca9f694ade76ac95b18aef49a55 Mon Feb 16 17:22:22 2026 -0800
    replacing dense jquery code with more explicit code and also fixing the case Gerardo found when a track does not have pack mode, refs #36917
  • lines changed 2, context: html, text, full: html, text
    7ce9b0df36452543414318ecdb736030cfc86be8 Fri Feb 27 06:39:30 2026 -0800
    superTrack UI: removing change handler from the top level dropdown, and adding the folder icons to the track labels, refs #37036
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    60d75b94bb7e8e3d749c103ff5ae613268562c46 Fri Jan 30 02:55:20 2026 -0800
    Revert "Revert "Reapply "changing superTrack TrackUi quite a bit."" This reverts commit 55df1a106590a6c9fd7e3cca90fa6bbad8eb50c4.
  • lines changed 5, context: html, text, full: html, text
    492f14378114d5b9c65e36137ad953b631fd7572 Fri Feb 27 13:00:13 2026 -0800
    Fixes issue found while investigating user question about multi-region. Since brian added automatic filtering of the users last search, the gene reading routine in multi-region exon code also needs to support it, otherwise mysterious differences appear between EV and DV modes. The searched gene will appear in the output to the screen regardless of other settings for KG like geneset of sliceVariants checkbox. refs #37175
• src/hg/hgc/clinvarSubLolly.c
  • lines changed 1, context: html, text, full: html, text
    0f65acf368d1eb66c7026b688002abee0eb81cb9 Wed Feb 25 11:09:50 2026 -0800
    fix bug on hgc page for clinvar submissions track on items located on chrom 0 in the bigBed numbering scheme refs #37138
  • lines changed 4, context: html, text, full: html, text
    0a79208523fe1f7091bf6c9ef0302ea57df9f5dc Thu Feb 26 06:56:42 2026 -0800
    cache lastChromId properly refs #37138
• src/hg/htdocs/goldenPath/help/hgSessionHelp.html
  • lines changed 20, context: html, text, full: html, text
    f1900dde9063ea0a4887c3f2d96fd8c29c9a1d6a Tue Feb 24 15:49:58 2026 -0800
    Adding information about Hub Space to the NAR help documentation. Changing relative links to CGIs to absolute when possible. Adding a missing <p> tag on the track hub help page, and adding information about hub space, refs #36893
• src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
  • lines changed 7, context: html, text, full: html, text
    f1900dde9063ea0a4887c3f2d96fd8c29c9a1d6a Tue Feb 24 15:49:58 2026 -0800
    Adding information about Hub Space to the NAR help documentation. Changing relative links to CGIs to absolute when possible. Adding a missing <p> tag on the track hub help page, and adding information about hub space, refs #36893
• src/hg/htdocs/goldenPath/help/quickLiftChain.html
  • lines changed 1, context: html, text, full: html, text
    1c6f1b10ac6d787712552650182fe1409f83d33d Wed Feb 25 13:42:59 2026 -0800
    Code review edit, refs #37147
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html
  • lines changed 1, context: html, text, full: html, text
    0d4f48bea646a366290aa513e180a7e5a850e4a7 Fri Feb 27 11:25:03 2026 -0800
    Fixing 'Mulitple' typo, refs ##37153
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 44, context: html, text, full: html, text
    b2c7a3e8ee4cee383957c9ce129138e221c56c95 Tue Feb 24 15:39:22 2026 -0800
    Announcing the new Recent Genomes & Connected Hub Assemblies lists and the new genome search on other CGIs, refs #34078
  • lines changed 1, context: html, text, full: html, text
    656046f15be10af43184064cb5d35522fe2e6554 Wed Feb 25 09:04:35 2026 -0800
    Updating the acknowledgement to Heng Li's group, refs #36293
  • lines changed 1, context: html, text, full: html, text
    e03e50f906ad12efbe0d1d600110e9c30420ecad Wed Feb 25 09:11:30 2026 -0800
    Forgot to remove 'the' in the acknowledgement to Heng Li's group, refs #36293
  • lines changed 4, context: html, text, full: html, text
    65e058417a3426cf2ee0100b1e47e3397c19fee3 Thu Feb 26 16:51:18 2026 -0800
    Adding a note about the Table Browser not allowing Genome as a query region for the JASPAR track, refs #37168
• src/hg/htdocs/images/newsArchImages/gatewayLists.png
  • lines changed 0, context: html, text, full: html, text
    b2c7a3e8ee4cee383957c9ce129138e221c56c95 Tue Feb 24 15:39:22 2026 -0800
    Announcing the new Recent Genomes & Connected Hub Assemblies lists and the new genome search on other CGIs, refs #34078
• src/hg/htdocs/indexNews.html
  • lines changed 12, context: html, text, full: html, text
    b2c7a3e8ee4cee383957c9ce129138e221c56c95 Tue Feb 24 15:39:22 2026 -0800
    Announcing the new Recent Genomes & Connected Hub Assemblies lists and the new genome search on other CGIs, refs #34078
• src/hg/htdocs/mirror.html
  • lines changed 3, context: html, text, full: html, text
    9ac5903c42a73ab958715c764ac2e15f19bfa358 Mon Mar 2 05:36:00 2026 -0800
    removing mention of china mirror, refs #36895
• src/hg/htdocs/store.html
  • lines changed 44, context: html, text, full: html, text
    f8b1de88ee801b9448f84e75dad6fed4fc891036 Thu Feb 26 17:10:29 2026 -0800
    GB store update has been staged for a while, pushing it out
• src/hg/htdocs/style/HGStyle.css
  • lines changed 58, context: html, text, full: html, text
    60d75b94bb7e8e3d749c103ff5ae613268562c46 Fri Jan 30 02:55:20 2026 -0800
    Revert "Revert "Reapply "changing superTrack TrackUi quite a bit."" This reverts commit 55df1a106590a6c9fd7e3cca90fa6bbad8eb50c4.
• src/hg/hubApi/apiUtils.c
  • lines changed 7, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
  • lines changed 7, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/dataApi.h
  • lines changed 3, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/getData.c
  • lines changed 35, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
  • lines changed 14, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/list.c
  • lines changed 4, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/altGraphX.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/barChart.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/bigChain.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/bigDbSnp.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/bigMaf.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/chain.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/clonePos.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/ctgPos.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/err49.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/expRatio.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/factorSource.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/gvf.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/interact.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/list23.gz
  • lines changed 0, context: html, text, full: html, text
    0c353a255111c08460a85c9ea4c304cca3885eb4 Mon Feb 23 13:57:52 2026 -0800
    Updating the make test expected output since we updated the underlying data, refs #37109
• src/hg/hubApi/tests/expected/multiTrack01.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/netAlign.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/peptideMapping.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/pgSnp.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/schema07.gz
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    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/test21.gz
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    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/test40.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/test42.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/test43.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/test44.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/test45.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/test46.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/test47.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/test48.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/test49.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/test50.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/test51.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/test52.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/test53.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/test54.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/test55.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/test56.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/test57.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
• src/hg/hubApi/tests/expected/wig01.gz
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    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig02.gz
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    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig03.gz
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    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig04.gz
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    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig05.gz
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    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig06.gz
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    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig07.gz
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    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig08.gz
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    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig09.gz
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    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig10.gz
  • lines changed 0, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig11.gz
  • lines changed 0, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig12.gz
  • lines changed 0, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig13.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
  • lines changed 0, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig14.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
  • lines changed 0, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig15.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
  • lines changed 0, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig16.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
  • lines changed 0, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig17.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
  • lines changed 0, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig18.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
  • lines changed 0, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig19.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
  • lines changed 0, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig20.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
  • lines changed 0, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig21.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
  • lines changed 0, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig22.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
  • lines changed 0, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig23.gz
  • lines changed 0, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
  • lines changed 0, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/hubApi/tests/expected/wig24.gz
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    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
  • lines changed 0, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/inc/hui.h
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    60d75b94bb7e8e3d749c103ff5ae613268562c46 Fri Jan 30 02:55:20 2026 -0800
    Revert "Revert "Reapply "changing superTrack TrackUi quite a bit."" This reverts commit 55df1a106590a6c9fd7e3cca90fa6bbad8eb50c4.
• src/hg/inc/jksql.h
  • lines changed 4, context: html, text, full: html, text
    030283b12881d07a2cf7c84b2af320dd9c39b30a Sat Feb 28 13:21:59 2026 -0800
    fix problem that cause crash if the trackDb cache was turned on and one of the tables in the hg.conf trackDb setting doesn't exist. No RM. Reported by Hillier.
• src/hg/js/hgTracks.js
  • lines changed 22, context: html, text, full: html, text
    9af188ea6147f9edb20bd531d3ec988501cf997c Fri Feb 6 12:18:25 2026 -0800
    Fix jsonOutputArrays columnTypes output when more than one track is requested with /getData/track. Leaves /list/schema alone. Add option to hgTracks Downloads -> Download track data in view menu to include column headers in output, refs #36858
  • lines changed 35, context: html, text, full: html, text
    195d1e11e2b71aa1bcbf6f2e5f2bc2d1992bfac8 Mon Feb 23 15:38:22 2026 -0800
    In right click menu for zoom to transcript, remove regex that parses chrom,start, and end from hgc/hgGene links and instead use the built-in url parser. This allows chrom names to have '.' in them like genark assemblies, refs #35905
  • lines changed 4, context: html, text, full: html, text
    020b8ffa0ab7d117e54c5e695d800318ba91d0b3 Wed Feb 25 10:25:18 2026 -0800
    Fix ideogram range parsing when clicking on ideogram, refs #37115
  • lines changed 4, context: html, text, full: html, text
    cef4ec8869e96456661e41f17a2b68b0a73fe0e9 Thu Feb 26 13:45:31 2026 -0800
    Warn user they have no tracks selected in download dialog, refs #36802
  • lines changed 17, context: html, text, full: html, text
    55858fedabd0a942ed8639db3ea0fd5fcfd3104b Thu Feb 26 15:00:25 2026 -0800
    Make hubApi wig table output behave like a bedgraph instead of having a top level key with the chromosome name that contains all the data, now there is a key with the trackName and then bedgraph like data of chrom,start,stop,value. Does not affect bigBed output which already worked this way. Clean up some missing 'let' declarations and fix some for loop logic in the download data in window feature, refs #36802,#36858
• src/hg/js/hui.js
  • lines changed 20, context: html, text, full: html, text
    aee2779a0e183ca9f694ade76ac95b18aef49a55 Mon Feb 16 17:22:22 2026 -0800
    replacing dense jquery code with more explicit code and also fixing the case Gerardo found when a track does not have pack mode, refs #36917
• src/hg/js/utils.js
  • lines changed 4, context: html, text, full: html, text
    60d75b94bb7e8e3d749c103ff5ae613268562c46 Fri Jan 30 02:55:20 2026 -0800
    Revert "Revert "Reapply "changing superTrack TrackUi quite a bit."" This reverts commit 55df1a106590a6c9fd7e3cca90fa6bbad8eb50c4.
  • lines changed 34, context: html, text, full: html, text
    2f4dc5368794ef8eb09e43c27420703b7cf6135f Mon Feb 23 11:22:17 2026 -0800
    Save ucsc databases to 'Genomes' menu bar recents list when adding genomes to the recents list from not hgGateway. Make urls to genark hubs correct, refs #36535
  • lines changed 178, context: html, text, full: html, text
    20ade701f198a5dc8ba8ea9483f6c98666451142 Tue Feb 24 14:59:27 2026 -0800
    Merge branch 'ui-supertrack'
  • lines changed 1, context: html, text, full: html, text
    2c7e77b183933d53fd1e62557622facffbd3f6e8 Tue Feb 24 15:07:01 2026 -0800
    commit error in previous commit, fixing now
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    7109422a8e5a016525dce4dbe220255a1c726729 Wed Feb 25 14:23:53 2026 -0800
    Adding a fix for the parseUrl function since it was crashing when there was no queryString in the URL, which was breaking writing to the apache log for the custom track tutorial after going to the 'Manage Custom Tracks' page for the second part of the tutorial, refs #37159
• src/hg/lib/hdb.c
  • lines changed 2, context: html, text, full: html, text
    030283b12881d07a2cf7c84b2af320dd9c39b30a Sat Feb 28 13:21:59 2026 -0800
    fix problem that cause crash if the trackDb cache was turned on and one of the tables in the hg.conf trackDb setting doesn't exist. No RM. Reported by Hillier.
• src/hg/lib/hui.c
  • lines changed 47, context: html, text, full: html, text
    60d75b94bb7e8e3d749c103ff5ae613268562c46 Fri Jan 30 02:55:20 2026 -0800
    Revert "Revert "Reapply "changing superTrack TrackUi quite a bit."" This reverts commit 55df1a106590a6c9fd7e3cca90fa6bbad8eb50c4.
  • lines changed 1, context: html, text, full: html, text
    16fcd800410b0c29be0564f2e657f30fa1862daf Fri Jan 30 04:10:41 2026 -0800
    fixing composite bug, refs #36917
  • lines changed 2, context: html, text, full: html, text
    44cff358be140287e85cddcfd585bbb9c8bb1318 Tue Feb 24 16:40:12 2026 -0800
    fixing bug that Jonathan found, I introduced that when making the superTrak UI changes, the mistake was that I changed the viz dropdown function too much, and introduced a new bug, refs #36917
  • lines changed 6, context: html, text, full: html, text
    db63cb8bc7c4d9988557fc4de66a241bcce28519 Mon Mar 2 06:58:13 2026 -0800
    got viz-remapping logic the opposite way in previous commit, refs #36917
• src/hg/lib/jksql.c
  • lines changed 29, context: html, text, full: html, text
    030283b12881d07a2cf7c84b2af320dd9c39b30a Sat Feb 28 13:21:59 2026 -0800
    fix problem that cause crash if the trackDb cache was turned on and one of the tables in the hg.conf trackDb setting doesn't exist. No RM. Reported by Hillier.
• src/hg/makeDb/trackDb/human/dnaMethylation.html
  • lines changed 1, context: html, text, full: html, text
    b3026b69caa0f44bf3824cc339b012304aef4b41 Thu Feb 26 04:56:29 2026 -0800
    Feedback from CR, mostly fixing grammar/punctuation and encoding to HTML, refs #37151
• src/hg/makeDb/trackDb/human/hg38/genotypeArrays.html
  • lines changed 3, context: html, text, full: html, text
    72705e339fac41eceee9ce5c05f03e49b0d30e97 Wed Feb 25 08:32:35 2026 -0800
    docing that Brooke's tracks highlight targets, not probes. refs #37137
  • lines changed 3, context: html, text, full: html, text
    7d86af0eb57a415fcc176cc2e1d5d2bc96425e2f Wed Feb 25 09:23:54 2026 -0800
    Adding a note about the hg38 450k track, refs #37137
• src/hg/makeDb/trackDb/human/hg38/gnomad3Coverage.html
  • lines changed 16, context: html, text, full: html, text
    ebdc9a8d2ee5e7c5536b9d517ace64f3af2c040d Fri Feb 27 15:43:48 2026 -0800
    Making each line less than 100 characters. Using the HTML entities for < and >= in the track description page. Changing 'GVCF' to 'gVCF', refs #37036
• src/hg/makeDb/trackDb/human/hg38/gnomad4ExomeCoverage.html
  • lines changed 17, context: html, text, full: html, text
    ebdc9a8d2ee5e7c5536b9d517ace64f3af2c040d Fri Feb 27 15:43:48 2026 -0800
    Making each line less than 100 characters. Using the HTML entities for < and >= in the track description page. Changing 'GVCF' to 'gVCF', refs #37036
• src/hg/makeDb/trackDb/jaspar.html
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    b3026b69caa0f44bf3824cc339b012304aef4b41 Thu Feb 26 04:56:29 2026 -0800
    Feedback from CR, mostly fixing grammar/punctuation and encoding to HTML, refs #37151
  • lines changed 3, context: html, text, full: html, text
    65e058417a3426cf2ee0100b1e47e3397c19fee3 Thu Feb 26 16:51:18 2026 -0800
    Adding a note about the Table Browser not allowing Genome as a query region for the JASPAR track, refs #37168
• src/hg/makeDb/trackDb/jaspar.ra
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    f91cf65c2a338360f118d0bff7ed581f26ecf699 Thu Feb 26 09:06:01 2026 -0800
    Adding noParentConfig and showCfg settings to resolve filter issue for jaspar container tracks, refs #37130
• src/hg/makeDb/trackDb/mouse/mm10/cCREregistry.html
  • lines changed 6, context: html, text, full: html, text
    b3026b69caa0f44bf3824cc339b012304aef4b41 Thu Feb 26 04:56:29 2026 -0800
    Feedback from CR, mostly fixing grammar/punctuation and encoding to HTML, refs #37151
• src/hg/makeDb/trackDb/mouse/mm10/cCREsSuper.html
  • lines changed 1, context: html, text, full: html, text
    b3026b69caa0f44bf3824cc339b012304aef4b41 Thu Feb 26 04:56:29 2026 -0800
    Feedback from CR, mostly fixing grammar/punctuation and encoding to HTML, refs #37151
• src/hg/utils/bigChainToChain/bigChainToChain.c
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    61dc7885a5f1001e2bc189501379088f2b53379d Mon Feb 23 15:42:36 2026 -0800
    fixes things found automated codereview. for bigBedCmdSupport lib moved slAddHead, removed stray debugmsg and fixed comment and added static keyword. fixed bigChainToChain chromFound = FALSE, removed stray test makefile, fixed existing typo "tines", and added a missing space after issing space before optionMultiVal(). refs #37146
• src/hg/utils/bigGenePredToGenePred/bigGenePredToGenePred.c
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    61dc7885a5f1001e2bc189501379088f2b53379d Mon Feb 23 15:42:36 2026 -0800
    fixes things found automated codereview. for bigBedCmdSupport lib moved slAddHead, removed stray debugmsg and fixed comment and added static keyword. fixed bigChainToChain chromFound = FALSE, removed stray test makefile, fixed existing typo "tines", and added a missing space after issing space before optionMultiVal(). refs #37146
• src/hg/utils/bigMafToMaf/bigMafToMaf.c
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    61dc7885a5f1001e2bc189501379088f2b53379d Mon Feb 23 15:42:36 2026 -0800
    fixes things found automated codereview. for bigBedCmdSupport lib moved slAddHead, removed stray debugmsg and fixed comment and added static keyword. fixed bigChainToChain chromFound = FALSE, removed stray test makefile, fixed existing typo "tines", and added a missing space after issing space before optionMultiVal(). refs #37146
• src/hg/utils/bigPslToPsl/bigPslToPsl.c
  • lines changed 1, context: html, text, full: html, text
    61dc7885a5f1001e2bc189501379088f2b53379d Mon Feb 23 15:42:36 2026 -0800
    fixes things found automated codereview. for bigBedCmdSupport lib moved slAddHead, removed stray debugmsg and fixed comment and added static keyword. fixed bigChainToChain chromFound = FALSE, removed stray test makefile, fixed existing typo "tines", and added a missing space after issing space before optionMultiVal(). refs #37146
• src/hg/utils/chainToBigChain/tests/makefile.galt.save
  • lines changed 28, context: html, text, full: html, text
    61dc7885a5f1001e2bc189501379088f2b53379d Mon Feb 23 15:42:36 2026 -0800
    fixes things found automated codereview. for bigBedCmdSupport lib moved slAddHead, removed stray debugmsg and fixed comment and added static keyword. fixed bigChainToChain chromFound = FALSE, removed stray test makefile, fixed existing typo "tines", and added a missing space after issing space before optionMultiVal(). refs #37146
• src/hg/utils/otto/clinGen/makeClinGenCspec.sh
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    40b8d780b901e30faa6906a425f112ab35165507 Wed Feb 25 13:17:48 2026 -0800
    Adding logic to the script so we can catch when teh external sources fail to provide the data. Waiting 5 minutes to attempt the wget again before quiting after 3 failed attempts. no Redmine
• src/hg/utils/otto/clinvar/clinVarToBed
  • lines changed 70, context: html, text, full: html, text
    1bdda934a747515ace019f22e35d859fa47863a4 Tue Feb 24 06:31:40 2026 -0800
    making sure that file rename in clinvar otto happens after lolly making, refs #37139
• src/hg/utils/otto/genCC/doGenCC.py
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    d3375c5d2c3d482c5739743c5548553b298ebf62 Wed Feb 25 05:40:03 2026 -0800
    Adding 10% diff check to GenCC which didn't have it, and a bad file from GenCC broke the track. No RM.
• src/inc/cheapcgi.h
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    60d75b94bb7e8e3d749c103ff5ae613268562c46 Fri Jan 30 02:55:20 2026 -0800
    Revert "Revert "Reapply "changing superTrack TrackUi quite a bit."" This reverts commit 55df1a106590a6c9fd7e3cca90fa6bbad8eb50c4.
• src/inc/common.h
  • lines changed 3, context: html, text, full: html, text
    60d75b94bb7e8e3d749c103ff5ae613268562c46 Fri Jan 30 02:55:20 2026 -0800
    Revert "Revert "Reapply "changing superTrack TrackUi quite a bit."" This reverts commit 55df1a106590a6c9fd7e3cca90fa6bbad8eb50c4.
• src/lib/bigBedCmdSupport.c
  • lines changed 6, context: html, text, full: html, text
    61dc7885a5f1001e2bc189501379088f2b53379d Mon Feb 23 15:42:36 2026 -0800
    fixes things found automated codereview. for bigBedCmdSupport lib moved slAddHead, removed stray debugmsg and fixed comment and added static keyword. fixed bigChainToChain chromFound = FALSE, removed stray test makefile, fixed existing typo "tines", and added a missing space after issing space before optionMultiVal(). refs #37146
• src/lib/cheapcgi.c
  • lines changed 4, context: html, text, full: html, text
    60d75b94bb7e8e3d749c103ff5ae613268562c46 Fri Jan 30 02:55:20 2026 -0800
    Revert "Revert "Reapply "changing superTrack TrackUi quite a bit."" This reverts commit 55df1a106590a6c9fd7e3cca90fa6bbad8eb50c4.
  • lines changed 4, context: html, text, full: html, text
    16fcd800410b0c29be0564f2e657f30fa1862daf Fri Jan 30 04:10:41 2026 -0800
    fixing composite bug, refs #36917
• src/lib/common.c
  • lines changed 8, context: html, text, full: html, text
    60d75b94bb7e8e3d749c103ff5ae613268562c46 Fri Jan 30 02:55:20 2026 -0800
    Revert "Revert "Reapply "changing superTrack TrackUi quite a bit."" This reverts commit 55df1a106590a6c9fd7e3cca90fa6bbad8eb50c4.
• src/product/ex.hg.conf
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    c2d85540a79a7acc1eb4d2e651dfa90565d3fa34 Fri Feb 27 07:37:55 2026 -0800
    forceTwoBit has been on by default for a decade, we have no assemblies with .nib files anymore, email from Michael Hiller
• src/utils/bigBedToBed/bigBedToBed.c
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    61dc7885a5f1001e2bc189501379088f2b53379d Mon Feb 23 15:42:36 2026 -0800
    fixes things found automated codereview. for bigBedCmdSupport lib moved slAddHead, removed stray debugmsg and fixed comment and added static keyword. fixed bigChainToChain chromFound = FALSE, removed stray test makefile, fixed existing typo "tines", and added a missing space after issing space before optionMultiVal(). refs #37146
• src/utils/bigWigToBedGraph/bigWigToBedGraph.c
  • lines changed 0, context: html, text, full: html, text
    61dc7885a5f1001e2bc189501379088f2b53379d Mon Feb 23 15:42:36 2026 -0800
    fixes things found automated codereview. for bigBedCmdSupport lib moved slAddHead, removed stray debugmsg and fixed comment and added static keyword. fixed bigChainToChain chromFound = FALSE, removed stray test makefile, fixed existing typo "tines", and added a missing space after issing space before optionMultiVal(). refs #37146
• src/utils/bigWigToWig/bigWigToWig.c
  • lines changed 0, context: html, text, full: html, text
    61dc7885a5f1001e2bc189501379088f2b53379d Mon Feb 23 15:42:36 2026 -0800
    fixes things found automated codereview. for bigBedCmdSupport lib moved slAddHead, removed stray debugmsg and fixed comment and added static keyword. fixed bigChainToChain chromFound = FALSE, removed stray test makefile, fixed existing typo "tines", and added a missing space after issing space before optionMultiVal(). refs #37146
• src/utils/qa/qaTestScript.py
  • lines changed 5, context: html, text, full: html, text
    c112240b17557c54d85daa57b761455b63077465 Mon Mar 2 09:21:11 2026 -0800
    Replacing XPATHs for hgc detail pages since they no longer use deeply nested table layouts, No RM
  • lines changed 5, context: html, text, full: html, text
    1ff987165df505e8c72d032d221fe79b778085c7 Mon Mar 2 09:21:11 2026 -0800
    Updated the XPATHs for hgTrackUi testing, No RM
• src/utils/wigToBigWig/tests/makefile
  • lines changed 1, context: html, text, full: html, text
    61dc7885a5f1001e2bc189501379088f2b53379d Mon Feb 23 15:42:36 2026 -0800
    fixes things found automated codereview. for bigBedCmdSupport lib moved slAddHead, removed stray debugmsg and fixed comment and added static keyword. fixed bigChainToChain chromFound = FALSE, removed stray test makefile, fixed existing typo "tines", and added a missing space after issing space before optionMultiVal(). refs #37146

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• files changed: 153